Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

72721913 .. 72724213

Gene Structure 2301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAATAGGATTATAAGAAAATGCAGGTTTATTTCTTTTATTGAACTAAATGCCATGTACATGACTTGTTTTATAACCTTGCTTGCTGCACATTGTTTACTTGTTTCTTCATGCCCAGAAGATAAAAATCCTTTGAATCAAGTCATGTCGGTTTCAACAAGTTTATCCTTTGTTGAAGAACAAGTAATCACACCTGAAAATGAAGTAGAGCAGTTTCAGTTGCTTGCTGCGGTTGAGGATTCATATGAGGGAGTAGTTGTGGACATGAACGATCATCAGCCCTTGGATTCTGAAGTTTTAACTTCTTTGCTCAGAGCTTCAATGTCACAATGGAAGCAAAAGGGGAAGAGGGGCGTTTGGATCAAATTACCTATTAAACTTTCGAATCTTGTTGATGCTGCAGTTAAGGAAGGATTTCGGTACCACCATGCCGAACCAGATTACCTAATGCTCGTGCACTGGATTCCTGAAACGGTTGATACTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCATGAACAGTAAAAGAGAGGTGCTTGTGGTTCAGGAGGTCAGTGGCTTTTTTAGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTGAATGAAGGTGAGGATATTTTTGCAGCTGCTGTTAGAGAAGTCAAAGAAGAGACTGGAATTGAGACAGAATTTGTGGAAATTTTAGCATTTAGTCAAAGCCATGAGGAATTCTTCCGAAAATCAGATTTGTTTTTCGTTTGCATGTTAGAACCACATTCCTTTGACATCCAGAAGCAGAACCTAGAGATTGCAGCAGCCCAGTGGATGCCGATTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAGCTGTTTAATGATATAGCACAAATATGTTTGGCAAAATCAGATAAGGACTATACCGGTTTTACTCCTCTGGGAACAACTACATCCTCCGGAAAAGCAAACTACTTGTACTTGAACAATCATGACATGGTCAAATTACTGACTTCTAGCACTGATCAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

343

Amino Acids

38.87

Weight (kDa)

5.06

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	75 - 155	2.7e-30	Nudix hydrolase domain
NUDIX	PF00293	168 - 288	4.5e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	14, 74
Acc36I	ACCTGC	1 cut(s)	15
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	420
AccIII	TCCGGA	1 cut(s)	956
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	3 cut(s)	686, 696, 725
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	3 cut(s)	59, 422, 977
AgeI	ACCGGT	1 cut(s)	923
AgsI	TTSAA	6 cut(s)	44, 136, 156, 176, 321, 982
AluBI	AGCT	4 cut(s)	317, 644, 845, 871
AluI	AGCT	4 cut(s)	317, 644, 845, 871
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	662, 674
Alw44I	GTGCAC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	647
Aor13HI	TCCGGA	1 cut(s)	956
ApaLI	GTGCAC	1 cut(s)	455
ApeKI	GCWGC	8 cut(s)	86, 227, 398, 641, 644, 809, 812, 842
ApoI	RAATTY	3 cut(s)	686, 696, 725
AsiGI	ACCGGT	1 cut(s)	923
Asp700I	GAANNNNTTC	1 cut(s)	414
Asp718I	GGTACC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	638
AsuII	TTCGAA	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	459
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BanI	GGYRCC	1 cut(s)	420
BauI	CACGAG	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	8 cut(s)	73, 214, 385, 631, 653, 821, 824, 854
BclI	TGATCA	1 cut(s)	1021
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	662, 674
BfaI	CTAG	3 cut(s)	800, 1014, 1030
BfmI	CTRYAG	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	8 cut(s)	87, 228, 399, 642, 645, 810, 813, 843
BlsI	GCNGC	8 cut(s)	88, 229, 400, 643, 646, 811, 814, 844
Bme1390I	CCNGG	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	2 cut(s)	385, 813
BmuI	ACTGGG	1 cut(s)	811
BpmI	CTGGAG	1 cut(s)	630
Bpu14I	TTCGAA	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	2 cut(s)	923, 956
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 472, 502
Bse118I	RCCGGY	1 cut(s)	923
Bse1I	ACTGG	4 cut(s)	464, 613, 676, 817
Bse8I	GATNNNNATC	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	956
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	3 cut(s)	783, 828, 950
BseJI	GATNNNNATC	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	4 cut(s)	464, 613, 676, 817
BseRI	GAGGAG	1 cut(s)	924
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	8 cut(s)	73, 214, 385, 631, 653, 821, 824, 854
BsgI	GTGCAG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	420
BshTI	ACCGGT	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	505, 924, 957
BsmAI	GTCTC	2 cut(s)	662, 674
Bsp119I	TTCGAA	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp13I	TCCGGA	1 cut(s)	956
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	271, 360, 1021
BspACI	CCGC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	956
BspHI	TCATGA	2 cut(s)	528, 988
BspLI	GGNNCC	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	923
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	4 cut(s)	464, 613, 676, 817
BssAI	RCCGGY	1 cut(s)	923
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	271, 360, 1021
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	475, 536
Bst6I	CTCTTC	3 cut(s)	341, 489, 660
BstAUI	TGTACA	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	84, 225
BstDEI	CTNAG	1 cut(s)	311
BstF5I	GGATG	3 cut(s)	783, 828, 950
BstKTI	GATC	3 cut(s)	274, 363, 1024
BstMAI	GTCTC	2 cut(s)	662, 674
BstMBI	GATC	3 cut(s)	271, 360, 1021
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	459
BstV1I	GCAGC	8 cut(s)	73, 214, 385, 631, 653, 821, 824, 854
BtsCI	GGATG	3 cut(s)	783, 828, 950
BtsIMutI	CAGTG	4 cut(s)	457, 574, 824, 1017
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	84, 225
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	2 cut(s)	528, 988
Cfr10I	RCCGGY	1 cut(s)	923
Csp6I	GTAC	3 cut(s)	58, 421, 976
CspAI	ACCGGT	1 cut(s)	923
CviJI	RGCY	8 cut(s)	280, 317, 573, 644, 717, 815, 845, 871
CviKI_1	RGCY	8 cut(s)	280, 317, 573, 644, 717, 815, 845, 871
CviQI	GTAC	3 cut(s)	58, 421, 976
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	3 cut(s)	273, 362, 1023
DpnII	GATC	3 cut(s)	271, 360, 1021
Eam1104I	CTCTTC	3 cut(s)	341, 489, 660
EarI	CTCTTC	3 cut(s)	341, 489, 660
Eco130I	CCWWGG	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	1021
Fnu4HI	GCNGC	8 cut(s)	87, 228, 399, 642, 645, 810, 813, 843
FokI	GGATG	3 cut(s)	770, 835, 937
Fsp4HI	GCNGC	8 cut(s)	87, 228, 399, 642, 645, 810, 813, 843
FspBI	CTAG	3 cut(s)	800, 1014, 1030
GluI	GCNGC	8 cut(s)	87, 228, 399, 642, 645, 810, 813, 843
GsuI	CTGGAG	1 cut(s)	630
HapII	CCGG	3 cut(s)	505, 924, 957
HinfI	GANTC	5 cut(s)	136, 239, 287, 385, 463
HpaII	CCGG	3 cut(s)	505, 924, 957
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	3 cut(s)	98, 262, 457
Hpy188I	TCNGA	5 cut(s)	292, 314, 734, 742, 910
Hpy188III	TCNNGA	6 cut(s)	467, 529, 560, 787, 957, 989
Hpy8I	GTNNAC	3 cut(s)	98, 262, 457
HpyAV	CCTTC	2 cut(s)	404, 617
HpyCH4III	ACNGT	2 cut(s)	475, 536
HpyCH4V	TGCA	8 cut(s)	24, 89, 401, 457, 641, 759, 809, 842
HpyF3I	CTNAG	1 cut(s)	311
Kpn2I	TCCGGA	1 cut(s)	956
KpnI	GGTACC	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	3 cut(s)	271, 360, 1021
Lsp1109I	GCAGC	8 cut(s)	73, 214, 385, 631, 653, 821, 824, 854
LweI	GCATC	2 cut(s)	385, 813
MaeI	CTAG	3 cut(s)	800, 1014, 1030
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	3 cut(s)	273, 362, 1023
MboI	GATC	3 cut(s)	271, 360, 1021
MboII	GAAGA	7 cut(s)	99, 131, 188, 358, 476, 677, 721
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	6 cut(s)	365, 675, 686, 696, 725, 1001
MroI	TCCGGA	1 cut(s)	956
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	4 cut(s)	299, 375, 405, 876
MslI	CAYNNNNRTG	2 cut(s)	59, 892
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	3 cut(s)	505, 924, 957
MspR9I	CCNGG	1 cut(s)	506
NciI	CCSGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	3 cut(s)	271, 360, 1021
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	324
NspI	RCATGY	1 cut(s)	763
NspV	TTCGAA	1 cut(s)	383
PagI	TCATGA	2 cut(s)	528, 988
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	5 cut(s)	136, 239, 287, 385, 463
PflFI	GACNNNGTC	1 cut(s)	995
PinAI	ACCGGT	1 cut(s)	923
PkrI	GCNGC	8 cut(s)	88, 229, 400, 643, 646, 811, 814, 844
PsiI	TTATAA	2 cut(s)	14, 74
PspN4I	GGNNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	647
PsyI	GACNNNGTC	1 cut(s)	995
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	3 cut(s)	59, 422, 977
RsaNI	GTAC	3 cut(s)	58, 421, 976
RseI	CAYNNNNRTG	2 cut(s)	59, 892
SaqAI	TTAA	4 cut(s)	299, 375, 405, 876
SatI	GCNGC	8 cut(s)	87, 228, 399, 642, 645, 810, 813, 843
Sau3AI	GATC	3 cut(s)	271, 360, 1021
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	385, 813
SfcI	CTRYAG	1 cut(s)	399
SfuI	TTCGAA	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	59, 892
Sse9I	AATT	6 cut(s)	365, 675, 686, 696, 725, 1001
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	3 cut(s)	800, 1014, 1030
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	475, 536
TaqI	TCGA	1 cut(s)	383
TasI	AATT	6 cut(s)	365, 675, 686, 696, 725, 1001
TatI	WGTACW	2 cut(s)	57, 975
TfiI	GAWTC	5 cut(s)	136, 239, 287, 385, 463
Tru1I	TTAA	4 cut(s)	299, 375, 405, 876
Tru9I	TTAA	4 cut(s)	299, 375, 405, 876
TscAI	CASTG	4 cut(s)	464, 574, 824, 1024
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	8 cut(s)	86, 227, 398, 641, 644, 809, 812, 842
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	7 cut(s)	17, 99, 216, 231, 281, 545, 636
TspRI	CASTG	4 cut(s)	464, 574, 824, 1024
Tth111I	GACNNNGTC	1 cut(s)	995
VneI	GTGCAC	1 cut(s)	455
XapI	RAATTY	3 cut(s)	686, 696, 725
XceI	RCATGY	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	3 cut(s)	800, 1014, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.