Rorug02G0450500

Nudix hydrolase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
57773251 .. 57776255
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0450500.1

Sequence Viewer

Length: 1206 bp
ATGTGGTGGAGATCCGCCTCCTTCATTCTCGACAACCGTCCCCAAAACGACGTCGCACCGCCCTCCAGACCCGACTCCCTTACTCTCTCCCCACCCACCATGGCCGACGCCGCCACCGCCGCCCTGCAGAGCCCTAACGCCAACTCCGCCTACTACCAGACCCGGGCCGCCCACCACGGCGTCGTCACCAGCGACTGGCTCGCCCAGGCCCAGGCCGCCGCGGGCCGAAACCCCGACGAGCAGGGCTCCGTCGTCGCCGCCGAGGCTGAGCCCAAGCCGGCGGCTTCTGAGTCCGGGAAGCCGTTCAGCGTCATCGTGGAGTTTAACAACTGGCGGAAGCAGCCTGATTTGGCTGAGGCCGTGGCGGCGATTCGGGCCTTGGCGTCTGTTATTAGATCCAGCGAGGCCACCACTATGATGGAGCTCGAAATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAGTCATGGGATACGACGTCTATATCTTTGACTGCTGGATGCGACCTGTTTATGCGGTATGTTACTCGAACTTCAGCTCTAGAGTATGAGGATTTCCACTCAGCCAAGTCTCGTTTGATTGAACGGGCAGAGAAGTTTGGGGAGATATCTACAAAGGCTCGTAGAATCATTGCTGTCCTTAGTCAAGACTTTATATTTGATGGTTGTACCATCTTGGTTCATGGTTTCTCTAGAGTTGTTCTAGAAGTACTGAAGACTGCGGCACAGAGCAAGAAACTCTTTCGAGTTTTCTGCACAGAGGGAAGACCAGACAGAACAGGATTACGGTTATCAAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAGCTCCTAATAGATTCTGCAGTGGCATATACCATGGATGAGGTTGACATGGTGTTTGTTGGGGCAGATGGAGTGGTTGAAAGTGGAGGTATTATAAATATGATGGGAACATATCAAATTGCATTGGTAGCACATAGCATGAACAAACCAGTTTATGTGGCTGCTGAAAGCTACAAGTTCGCTCGCCTTTATCCATTGGACCAGAAAGACATGGCCCCTGCATTACGCCCCATTGATTTTGGGGTTCCCATCCCGTCCAAGGTTGAGGTTGAAAGATCTGCCCGTGATTATACGCCTCCTCAATATCTCACTTTACTCTTCACAGACTTGGGCGTGCTCACTCCATCGGTTGTCAGTGATGAGCTGATTCAGCTGTACTTGTAA

Protein Analysis

401

Amino Acids

43.99

Weight (kDa)

5.34

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 114 - 389 2.6e-72 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 917
AatII GACGTC 2 cut(s) 54, 479
AccB7I CCANNNNNTGG 1 cut(s) 195
AccII CGCG 1 cut(s) 221
AclWI GGATC 2 cut(s) 6, 390
AcoI YGGCCR 2 cut(s) 102, 801
AcuI CTGAAG 2 cut(s) 516, 731
AcyI GRCGYC 5 cut(s) 51, 108, 180, 383, 476
AfaI GTAC 3 cut(s) 667, 708, 1199
AfiI CCNNNNNNNGG 4 cut(s) 163, 195, 211, 1081
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 3 cut(s) 581, 902, 1094
AjnI CCWGG 2 cut(s) 204, 210
AluBI AGCT 9 cut(s) 424, 436, 536, 799, 808, 826, 993, 1186, 1195
AluI AGCT 9 cut(s) 424, 436, 536, 799, 808, 826, 993, 1186, 1195
Alw21I GWGCWC 3 cut(s) 426, 438, 1161
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 2 cut(s) 6, 390
AlwNI CAGNNNCTG 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 340, 983
ArsI GACNNNNNNTTYG 4 cut(s) 638, 670, 860, 892
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 6 cut(s) 165, 208, 223, 375, 1021, 1036
AsuC2I CCSGG 3 cut(s) 163, 164, 295
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 1021
BalI TGGCCA 1 cut(s) 803
BanII GRGCYC 5 cut(s) 134, 248, 273, 426, 438
BbsI GAAGAC 2 cut(s) 719, 769
Bbv12I GWGCWC 3 cut(s) 426, 438, 1161
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 352, 970
BccI CCATC 7 cut(s) 412, 653, 677, 884, 919, 1079, 1174
BceAI ACGGC 3 cut(s) 193, 286, 344
BcgI CGANNNNNNTGC 2 cut(s) 732, 766
BciT130I CCWGG 2 cut(s) 206, 212
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 3 cut(s) 163, 164, 295
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 3 cut(s) 539, 690, 701
BfmI CTRYAG 2 cut(s) 125, 840
BfrI CTTAAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 463
BglI GCCNNNNNGGC 2 cut(s) 263, 365
BglII AGATCT 1 cut(s) 1097
BlpI GCTNAGC 1 cut(s) 267
BmcAI AGTACT 1 cut(s) 708
Bme1390I CCNGG 5 cut(s) 163, 164, 206, 212, 295
Bme18I GGWCC 1 cut(s) 1021
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 6 cut(s) 165, 208, 223, 375, 1021, 1036
BmiI GGNNCC 3 cut(s) 247, 1038, 1068
BmrFI CCNGG 5 cut(s) 163, 164, 206, 212, 295
BmsI GCATC 1 cut(s) 488
BoxI GACNNNNGTC 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 719, 769
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 3 cut(s) 163, 164, 295
BsaHI GRCGYC 5 cut(s) 51, 108, 180, 383, 476
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 195, 211, 1081
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 3 cut(s) 200, 335, 971
Bse3DI GCAATG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 206, 212
BseGI GGATG 3 cut(s) 503, 865, 1071
BseLI CCNNNNNNNGG 4 cut(s) 163, 195, 211, 1081
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 4 cut(s) 258, 279, 345, 573
BseNI ACTGG 3 cut(s) 200, 335, 971
BseRI GAGGAG 1 cut(s) 1110
BseXI GCAGC 2 cut(s) 352, 970
BsgI GTGCAG 1 cut(s) 736
Bsh1236I CGCG 1 cut(s) 221
BsiHKAI GWGCWC 3 cut(s) 426, 438, 1161
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 163, 278, 294
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 4 cut(s) 163, 195, 211, 1081
BsmAI GTCTC 1 cut(s) 573
BsmFI GGGAC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 6 cut(s) 134, 248, 273, 426, 438, 1161
Bsp143I GATC 3 cut(s) 11, 395, 1097
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 2 cut(s) 99, 855
BspCNI CTCAG 4 cut(s) 259, 280, 346, 572
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 3 cut(s) 247, 1038, 1068
BspMAI CTGCAG 2 cut(s) 129, 844
BspPI GGATC 2 cut(s) 6, 390
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 627
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 3 cut(s) 200, 335, 971
BssAI RCCGGY 1 cut(s) 277
BssMI GATC 3 cut(s) 11, 395, 1097
BssNI GRCGYC 5 cut(s) 51, 108, 180, 383, 476
BssT1I CCWWGG 4 cut(s) 99, 378, 855, 1080
Bst2UI CCWGG 2 cut(s) 206, 212
Bst4CI ACNGT 2 cut(s) 38, 786
Bst6I CTCTTC 1 cut(s) 1145
BstACI GRCGYC 5 cut(s) 51, 108, 180, 383, 476
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 6 cut(s) 201, 223, 279, 801, 1006, 1157
BstDEI CTNAG 5 cut(s) 267, 288, 354, 559, 638
BstDSI CCRYGG 5 cut(s) 99, 175, 219, 360, 855
BstF5I GGATG 3 cut(s) 503, 865, 1071
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 3 cut(s) 14, 398, 1100
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 3 cut(s) 11, 395, 1097
BstNI CCWGG 2 cut(s) 206, 212
BstPAI GACNNNNGTC 1 cut(s) 36
BstSCI CCNGG 5 cut(s) 161, 162, 204, 210, 293
BstSFI CTRYAG 2 cut(s) 125, 840
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 352, 970
BstV2I GAAGAC 2 cut(s) 719, 769
BstX2I RGATCY 3 cut(s) 11, 395, 1097
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 3 cut(s) 11, 395, 1097
BsuI GTATCC 1 cut(s) 463
BtgI CCRYGG 5 cut(s) 99, 175, 219, 360, 855
BtsCI GGATG 3 cut(s) 503, 865, 1071
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 2 cut(s) 849, 1183
Cac8I GCNNGC 6 cut(s) 201, 223, 279, 801, 1006, 1157
CaiI CAGNNNCTG 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 6 cut(s) 165, 208, 223, 375, 1021, 1036
Cfr42I CCGCGG 1 cut(s) 222
Cfr9I CCCGGG 1 cut(s) 162
CseI GACGC 4 cut(s) 116, 169, 298, 372
Csp6I GTAC 3 cut(s) 666, 707, 1198
CviAII CATG 7 cut(s) 100, 465, 680, 856, 871, 961, 1033
CviQI GTAC 3 cut(s) 666, 707, 1198
DdeI CTNAG 5 cut(s) 267, 288, 354, 559, 638
DpnI GATC 3 cut(s) 13, 397, 1099
DpnII GATC 3 cut(s) 11, 395, 1097
EaeI YGGCCR 2 cut(s) 102, 801
Eam1104I CTCTTC 1 cut(s) 1145
EarI CTCTTC 1 cut(s) 1145
EciI GGCGGA 3 cut(s) 4, 136, 349
Ecl136II GAGCTC 2 cut(s) 424, 436
Eco130I CCWWGG 4 cut(s) 99, 378, 855, 1080
Eco24I GRGCYC 5 cut(s) 134, 248, 273, 426, 438
Eco32I GATATC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 1021
Eco53kI GAGCTC 2 cut(s) 424, 436
Eco57I CTGAAG 2 cut(s) 516, 731
Eco88I CYCGRG 1 cut(s) 162
EcoICRI GAGCTC 2 cut(s) 424, 436
EcoRII CCWGG 2 cut(s) 204, 210
EcoRV GATATC 1 cut(s) 606
EcoT14I CCWWGG 4 cut(s) 99, 378, 855, 1080
EcoT38I GRGCYC 5 cut(s) 134, 248, 273, 426, 438
ErhI CCWWGG 4 cut(s) 99, 378, 855, 1080
FaeI CATG 7 cut(s) 103, 468, 683, 859, 874, 964, 1036
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 1 cut(s) 24
FatI CATG 7 cut(s) 99, 464, 679, 855, 870, 960, 1032
FauI CCCGC 1 cut(s) 214
FokI GGATG 3 cut(s) 510, 872, 1058
FriOI GRGCYC 5 cut(s) 134, 248, 273, 426, 438
FspBI CTAG 3 cut(s) 539, 690, 701
GsuI CTGGAG 1 cut(s) 49
HapII CCGG 3 cut(s) 163, 278, 294
HgaI GACGC 4 cut(s) 116, 169, 298, 372
Hin1I GRCGYC 5 cut(s) 51, 108, 180, 383, 476
Hin1II CATG 7 cut(s) 103, 468, 683, 859, 874, 964, 1036
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 7 cut(s) 74, 290, 370, 452, 624, 836, 1189
HpaII CCGG 3 cut(s) 163, 278, 294
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 2 cut(s) 289, 451
Hpy188III TCNNGA 7 cut(s) 29, 66, 439, 539, 644, 690, 701
Hpy8I GTNNAC 1 cut(s) 868
Hpy99I CGWCG 8 cut(s) 53, 56, 110, 185, 239, 254, 257, 478
HpyAV CCTTC 2 cut(s) 31, 436
HpyCH4III ACNGT 2 cut(s) 38, 786
HpyCH4IV ACGT 2 cut(s) 51, 476
HpyCH4V TGCA 5 cut(s) 127, 753, 842, 944, 1043
HpyF3I CTNAG 5 cut(s) 267, 288, 354, 559, 638
HpySE526I ACGT 2 cut(s) 51, 476
Hsp92I GRCGYC 5 cut(s) 51, 108, 180, 383, 476
Hsp92II CATG 7 cut(s) 103, 468, 683, 859, 874, 964, 1036
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 3 cut(s) 11, 395, 1097
LmnI GCTCC 3 cut(s) 251, 421, 831
Lsp1109I GCAGC 2 cut(s) 352, 970
LweI GCATC 1 cut(s) 488
MaeI CTAG 3 cut(s) 539, 690, 701
MaeII ACGT 2 cut(s) 51, 476
MaeIII GTNAC 2 cut(s) 184, 520
MalI GATC 3 cut(s) 13, 397, 1099
MboI GATC 3 cut(s) 11, 395, 1097
MboII GAAGA 3 cut(s) 724, 774, 1132
MflI RGATCY 3 cut(s) 11, 395, 1097
MhlI GDGCHC 6 cut(s) 134, 248, 273, 426, 438, 1161
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 2 cut(s) 429, 939
MluNI TGGCCA 1 cut(s) 803
MlyI GAGTC 2 cut(s) 68, 299
Mox20I TGGCCA 1 cut(s) 803
MroNI GCCGGC 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 302
MscI TGGCCA 1 cut(s) 803
MseI TTAA 2 cut(s) 324, 459
MslI CAYNNNNRTG 2 cut(s) 413, 416
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 2 cut(s) 221, 1195
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 3 cut(s) 163, 278, 294
MspR9I CCNGG 5 cut(s) 163, 164, 206, 212, 295
MvaI CCWGG 2 cut(s) 206, 212
MvnI CGCG 1 cut(s) 221
NaeI GCCGGC 1 cut(s) 279
NciI CCSGG 3 cut(s) 163, 164, 295
NcoI CCATGG 2 cut(s) 99, 855
NdeII GATC 3 cut(s) 11, 395, 1097
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 7 cut(s) 103, 468, 683, 859, 874, 964, 1036
NlaIV GGNNCC 3 cut(s) 247, 1038, 1068
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 184
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 258
PdiI GCCGGC 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 5 cut(s) 370, 452, 624, 836, 1189
PflMI CCANNNNNTGG 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 293
PleI GAGTC 2 cut(s) 68, 298
PpsI GAGTC 2 cut(s) 68, 298
PshAI GACNNNNGTC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 917
Psp124BI GAGCTC 2 cut(s) 426, 438
Psp6I CCWGG 2 cut(s) 204, 210
PspGI CCWGG 2 cut(s) 204, 210
PspN4I GGNNCC 3 cut(s) 247, 1038, 1068
PspPI GGNCC 6 cut(s) 165, 208, 223, 375, 1021, 1036
PstI CTGCAG 2 cut(s) 129, 844
PstNI CAGNNNCTG 1 cut(s) 195
PsuI RGATCY 3 cut(s) 11, 395, 1097
PvuII CAGCTG 1 cut(s) 1195
RsaI GTAC 3 cut(s) 667, 708, 1199
RsaNI GTAC 3 cut(s) 666, 707, 1198
RseI CAYNNNNRTG 2 cut(s) 413, 416
SacI GAGCTC 2 cut(s) 426, 438
SacII CCGCGG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 324, 459
Sau3AI GATC 3 cut(s) 11, 395, 1097
Sau96I GGNCC 6 cut(s) 165, 208, 223, 375, 1021, 1036
ScaI AGTACT 1 cut(s) 708
SchI GAGTC 2 cut(s) 68, 299
ScrFI CCNGG 5 cut(s) 163, 164, 206, 212, 295
SduI GDGCHC 6 cut(s) 134, 248, 273, 426, 438, 1161
SfaNI GCATC 1 cut(s) 488
SfcI CTRYAG 2 cut(s) 125, 840
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 1 cut(s) 1021
SmaI CCCGGG 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 413, 416
SmlI CTYRAG 2 cut(s) 437, 458
SmoI CTYRAG 2 cut(s) 437, 458
Sse9I AATT 2 cut(s) 429, 939
SspMI CTAG 3 cut(s) 539, 690, 701
SstI GAGCTC 2 cut(s) 426, 438
StyD4I CCNGG 5 cut(s) 161, 162, 204, 210, 293
StyI CCWWGG 4 cut(s) 99, 378, 855, 1080
TaaI ACNGT 2 cut(s) 38, 786
TaiI ACGT 2 cut(s) 54, 479
TaqI TCGA 4 cut(s) 30, 426, 526, 742
TasI AATT 2 cut(s) 429, 939
TatI WGTACW 2 cut(s) 706, 1197
TauI GCSGC 9 cut(s) 113, 122, 170, 218, 221, 260, 284, 368, 722
TfiI GAWTC 5 cut(s) 370, 452, 624, 836, 1189
Tru1I TTAA 2 cut(s) 324, 459
Tru9I TTAA 2 cut(s) 324, 459
TscAI CASTG 2 cut(s) 849, 1183
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 340, 983
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 13, 668, 977
TspGWI ACGGA 1 cut(s) 238
TspMI CCCGGG 1 cut(s) 162
TspRI CASTG 2 cut(s) 849, 1183
Van91I CCANNNNNTGG 1 cut(s) 195
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 1021
XbaI TCTAGA 3 cut(s) 538, 689, 700
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmaI CCCGGG 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 3 cut(s) 539, 690, 701
ZraI GACGTC 2 cut(s) 52, 477
ZrmI AGTACT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.