Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

74401968 .. 74404738

Gene Structure 2771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG517100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTGATCACCATTGATGCAAGATTACCTGGGAAGAAGGGCGTTTGGATCAAATTGCCTAAGCAACTCTCGAACCTTGTTGATGTGACAGTTAAGGAAGGATTTAGGTACCACCATGCCGAACCAGATTACCTAATGCTGGTGCATTGGATACCTGAAACAGTTGATCCTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCGTAAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGGCCAATGGCTTTTTCCGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTTGATGAAGGTGAGGATATTTTCGCAGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTTGTGGAAATGTTAGCATTTAGGCACAGCCACAAGGCATTCTTTAGAAAATCGGATTTGTTTTTCATTTGCATGTTAAAACCACATTCCTTTGACATCCAGAAGCAGGATTTAGAGATTGCGGCAGCACAGTGGATGCCGATTGAGGACTATGCAGCTCAACCTTTCGTCAAAGAAAACAAACTGTTTGATGATGTAGCACAAATATGTTTAGCGAAATTGGATAAGGACTATGCTGGTTTTACTTCTCTGGCAACAACTACATCCTCTGGGAAAACCAGCTACTTGTACTTCAACAAGGGCAATATGGGAAACCTACGAACTTCTGTTAATGATCAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

240

Amino Acids

27.17

Weight (kDa)

5.82

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	10 - 51	5.3e-16	Nudix hydrolase domain
NUDIX	PF00293	64 - 185	1.8e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	108
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	2 cut(s)	56, 161
AfaI	GTAC	2 cut(s)	110, 665
AfiI	CCNNNNNNNGG	2 cut(s)	139, 481
AgsI	TTSAA	1 cut(s)	670
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	3 cut(s)	332, 533, 657
AluI	AGCT	3 cut(s)	332, 533, 657
Alw26I	GTCTC	2 cut(s)	350, 362
AlwI	GGATC	2 cut(s)	56, 161
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	5 cut(s)	329, 332, 500, 530, 715
Asp718I	GGTACC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	326
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BanI	GGYRCC	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	319, 341, 512, 542
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	144
BclI	TGATCA	2 cut(s)	6, 709
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	350, 362
BfmI	CTRYAG	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	144
BisI	GCNGC	6 cut(s)	330, 333, 498, 501, 531, 716
BlsI	GCNGC	6 cut(s)	331, 334, 499, 502, 532, 717
Bme1390I	CCNGG	2 cut(s)	30, 194
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	2 cut(s)	30, 194
BmsI	GCATC	2 cut(s)	7, 501
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 481
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	3 cut(s)	471, 516, 638
BseLI	CCNNNNNNNGG	2 cut(s)	139, 481
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	4 cut(s)	319, 341, 512, 542
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	139, 481
BsmAI	GTCTC	2 cut(s)	350, 362
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	6, 48, 166, 709
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	110
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	2 cut(s)	56, 161
BspT107I	GGYRCC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	4 cut(s)	6, 48, 166, 709
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	5 cut(s)	91, 163, 224, 507, 561
Bst6I	CTCTTC	2 cut(s)	177, 348
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	471, 516, 638
BstKTI	GATC	4 cut(s)	9, 51, 169, 712
BstMAI	GTCTC	2 cut(s)	350, 362
BstMBI	GATC	4 cut(s)	6, 48, 166, 709
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	28, 192
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	319, 341, 512, 542
BsuI	GTATCC	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	471, 516, 638
BtsIMutI	CAGTG	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	109, 664
CviAII	CATG	2 cut(s)	116, 448
CviJI	RGCY	6 cut(s)	254, 261, 332, 405, 533, 657
CviKI_1	RGCY	6 cut(s)	254, 261, 332, 405, 533, 657
CviQI	GTAC	2 cut(s)	109, 664
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	4 cut(s)	8, 50, 168, 711
DpnII	GATC	4 cut(s)	6, 48, 166, 709
Eam1104I	CTCTTC	2 cut(s)	177, 348
EarI	CTCTTC	2 cut(s)	177, 348
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	119, 451
FaiI	YATR	7 cut(s)	117, 283, 449, 528, 583, 609, 683
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	2 cut(s)	115, 447
FbaI	TGATCA	2 cut(s)	6, 709
Fnu4HI	GCNGC	6 cut(s)	330, 333, 498, 501, 531, 716
FokI	GGATG	3 cut(s)	458, 523, 625
Fsp4HI	GCNGC	6 cut(s)	330, 333, 498, 501, 531, 716
GluI	GCNGC	6 cut(s)	330, 333, 498, 501, 531, 716
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	2 cut(s)	119, 451
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	269, 430
Hpy188III	TCNNGA	3 cut(s)	70, 248, 475
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	31, 92, 305
HpyCH4III	ACNGT	5 cut(s)	91, 163, 224, 507, 561
HpyCH4V	TGCA	5 cut(s)	20, 145, 335, 447, 530
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	119, 451
KpnI	GGTACC	1 cut(s)	112
Ksp22I	TGATCA	2 cut(s)	6, 709
Kzo9I	GATC	4 cut(s)	6, 48, 166, 709
Lsp1109I	GCAGC	4 cut(s)	319, 341, 512, 542
LweI	GCATC	2 cut(s)	7, 501
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	8, 50, 168, 711
MboI	GATC	4 cut(s)	6, 48, 166, 709
MboII	GAAGA	3 cut(s)	46, 164, 365
MluCI	AATT	3 cut(s)	53, 363, 593
MnlI	CCTC	7 cut(s)	180, 186, 226, 244, 310, 514, 652
MseI	TTAA	3 cut(s)	93, 452, 705
MslI	CAYNNNNRTG	2 cut(s)	446, 580
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	2 cut(s)	30, 194
Mva1269I	GAATGC	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	30
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	4 cut(s)	6, 48, 166, 709
NlaIII	CATG	2 cut(s)	119, 451
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	451
PctI	GAATGC	1 cut(s)	413
PkrI	GCNGC	6 cut(s)	331, 334, 499, 502, 532, 717
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	110, 665
RsaNI	GTAC	2 cut(s)	109, 664
RseI	CAYNNNNRTG	2 cut(s)	446, 580
SaqAI	TTAA	3 cut(s)	93, 452, 705
SatI	GCNGC	6 cut(s)	330, 333, 498, 501, 531, 716
Sau3AI	GATC	4 cut(s)	6, 48, 166, 709
ScrFI	CCNGG	2 cut(s)	30, 194
SfaNI	GCATC	2 cut(s)	7, 501
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	446, 580
Sse9I	AATT	3 cut(s)	53, 363, 593
SsiI	CCGC	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	28, 192
TaaI	ACNGT	5 cut(s)	91, 163, 224, 507, 561
TaqI	TCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	53, 363, 593
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	1 cut(s)	500
Tru1I	TTAA	3 cut(s)	93, 452, 705
Tru9I	TTAA	3 cut(s)	93, 452, 705
TscAI	CASTG	1 cut(s)	512
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	5 cut(s)	329, 332, 500, 530, 715
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	324, 430
TspRI	CASTG	1 cut(s)	512
XceI	RCATGY	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.