Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

67345885 .. 67352917

Gene Structure 7033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG501500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAGCGAGCTTAACAGCTTTCTGTTTCATTTCTTGCTGACCAATTACCTGATAACACGTGGCATGTACTGTTACAGAATAGCGTACCAAAAACCTCAAGGACTTGCTTATTCAAAGGTCTCACAAACCCTTACAGCAAGGATCAAAGCGAACGGGAAAGTTCCATGTGTTCTTCCCAATCAAAATAGAGGTTCAGAGCCACCACCAATTTCATCCTCCTCCTGGTTTCAGTTTCCCAAAGTCCCAAAAGATAAAAATCCATTATTGAATCAAGTCATGTCAGTTTCAACAAGTTCATGTGCTGTTGCAAAGCAATGCTTGATGGCCGAAAGTGGAGTTGAGCAGATTGAATTGCTCAATGCACATGATGATATACATGGGGGAGTTGTTGTAGACATGAAAGACCAGCCCATGGATTCTGAGGTCTTTGGTTCTTTGCTCAAAGCTTCACTGTCAGAATGGAGGCAAAAGGAAAAGAAGGGTGTTTGGATCAAATTGCCGATTGAACTCTCAAATCTTGTTCATGCTGCAGTTCAGGAAGGATTTACTTATCACCATGCTGAATCAGATTACCTAATGCTTAAACGTTGGCTGCCTGAAACTGTTGATACTCTTCCTGCGAATGCCTCTCATCGAGTGGGCATTGGTGCTTTCATCATGAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGATCAATGGCAGATTCAAAGATACAGGTGTCTGGAAGATGCCAACTGGGGCTGTTAATGAAGGAGAGGATATTTGTGCAGCAGCAGTTAGGGAAGTCAAAGAAGAGACAGGAATTGAGTCAGAGTTTGTGGAAATATTAGCGTTCAGGCAAAGCCACAAGTCATTCTTTCGAAAATCAGATTTATTTTTCGTTTGCATGTTAAAACCGCAAACCTTTGACATACAGGAGCAGAATCAAGAGATTGCAGCAGCCCAGTGGATGCCATTTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAACTCTTTGATTATGTAGCAGAAATATGTTTGGCAAAAACAGATGAGCATTATACTGGTTTTACTCCTCTAGCAACGACTACATCCTCTGGAAAAGCAAGCTACTTGTATTTCAACCACCGGGATATGGGTGGCCTACTCACTTCCGATAAACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

385

Amino Acids

43.4

Weight (kDa)

6.23

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	119 - 198	4.4e-31	Nudix hydrolase domain
NUDIX	PF00293	211 - 331	2.6e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	1 cut(s)	899
AclI	AACGTT	1 cut(s)	586
AclWI	GGATC	2 cut(s)	149, 497
AcoI	YGGCCR	1 cut(s)	324
AcvI	CACGTG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	68, 86
AfiI	CCNNNNNNNGG	3 cut(s)	222, 412, 1123
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	7 cut(s)	114, 268, 288, 350, 506, 709, 1111
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	5 cut(s)	10, 18, 446, 974, 1098
AluI	AGCT	5 cut(s)	10, 18, 446, 974, 1098
Alw26I	GTCTC	2 cut(s)	124, 791
AlwI	GGATC	2 cut(s)	149, 497
AoxI	GGCC	2 cut(s)	324, 1129
ApeKI	GCWGC	7 cut(s)	527, 592, 770, 773, 938, 941, 971
AsuC2I	CCSGG	1 cut(s)	1118
AsuHPI	GGTGA	1 cut(s)	545
AsuII	TTCGAA	1 cut(s)	862
BaeI	ACNNNNGTAYC	2 cut(s)	705, 738
BbrPI	CACGTG	1 cut(s)	59
BbvI	GCAGC	7 cut(s)	514, 579, 782, 785, 950, 953, 983
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	1118
BcoDI	GTCTC	2 cut(s)	124, 791
BfaI	CTAG	1 cut(s)	1067
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	7 cut(s)	528, 593, 771, 774, 939, 942, 972
BlsI	GCNGC	7 cut(s)	529, 594, 772, 775, 940, 943, 973
Bme1390I	CCNGG	2 cut(s)	223, 1118
BmrFI	CCNGG	2 cut(s)	223, 1118
BmrI	ACTGGG	2 cut(s)	747, 940
BmsI	GCATC	2 cut(s)	720, 942
BmuI	ACTGGG	2 cut(s)	747, 940
Bpu14I	TTCGAA	1 cut(s)	862
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	1118
BsaAI	YACGTR	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 412, 1123
Bse1I	ACTGG	3 cut(s)	742, 946, 1057
Bse3DI	GCAATG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	3 cut(s)	212, 957, 1079
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	222, 412, 1123
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	3 cut(s)	742, 946, 1057
BseRI	GAGGAG	2 cut(s)	208, 1053
BseXI	GCAGC	7 cut(s)	514, 579, 782, 785, 950, 953, 983
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	2 cut(s)	326, 1131
BsiSI	CCGG	1 cut(s)	1117
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	222, 412, 1123
BsmAI	GTCTC	2 cut(s)	124, 791
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	326, 1131
Bso31I	GGTCTC	1 cut(s)	124
Bsp119I	TTCGAA	1 cut(s)	862
Bsp143I	GATC	3 cut(s)	141, 489, 693
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	1 cut(s)	899
BspANI	GGCC	2 cut(s)	326, 1131
BspCNI	CTCAG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	2 cut(s)	149, 497
BspT104I	TTCGAA	1 cut(s)	862
BspTNI	GGTCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	320
BsrI	ACTGG	3 cut(s)	742, 946, 1057
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	141, 489, 693
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	5 cut(s)	71, 453, 604, 665, 1155
Bst6I	CTCTTC	2 cut(s)	618, 789
BstBAI	YACGTR	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	862
BstC8I	GCNNGC	2 cut(s)	8, 1096
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	3 cut(s)	212, 957, 1079
BstKTI	GATC	3 cut(s)	144, 492, 696
BstMAI	GTCTC	2 cut(s)	124, 791
BstMBI	GATC	3 cut(s)	141, 489, 693
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	2 cut(s)	67, 892
BstSCI	CCNGG	2 cut(s)	221, 1116
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	7 cut(s)	514, 579, 782, 785, 950, 953, 983
BsuRI	GGCC	2 cut(s)	326, 1131
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	3 cut(s)	212, 957, 1079
BtsIMutI	CAGTG	2 cut(s)	449, 953
Cac8I	GCNNGC	2 cut(s)	8, 1096
CciI	TCATGA	1 cut(s)	657
Csp6I	GTAC	2 cut(s)	67, 85
CviQI	GTAC	2 cut(s)	67, 85
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	3 cut(s)	143, 491, 695
DpnII	GATC	3 cut(s)	141, 489, 693
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	618, 789
EarI	CTCTTC	2 cut(s)	618, 789
Eco130I	CCWWGG	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	124
Eco72I	CACGTG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 842, 874
FaqI	GGGAC	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	7 cut(s)	528, 593, 771, 774, 939, 942, 972
FokI	GGATG	3 cut(s)	199, 964, 1066
Fsp4HI	GCNGC	7 cut(s)	528, 593, 771, 774, 939, 942, 972
FspBI	CTAG	1 cut(s)	1067
GluI	GCNGC	7 cut(s)	528, 593, 771, 774, 939, 942, 972
HaeIII	GGCC	2 cut(s)	326, 1131
HapII	CCGG	1 cut(s)	1117
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	6 cut(s)	268, 416, 563, 705, 809, 925
HpaII	CCGG	1 cut(s)	1117
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	7 cut(s)	196, 421, 457, 568, 814, 871, 1144
Hpy188III	TCNNGA	6 cut(s)	536, 658, 689, 724, 929, 1086
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	472, 533, 746
HpyCH4III	ACNGT	5 cut(s)	71, 453, 604, 665, 1155
HpyCH4IV	ACGT	2 cut(s)	58, 586
HpyCH4V	TGCA	7 cut(s)	308, 362, 530, 770, 888, 938, 971
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	58, 586
Kzo9I	GATC	3 cut(s)	141, 489, 693
LmnI	GCTCC	1 cut(s)	919
Lsp1109I	GCAGC	7 cut(s)	514, 579, 782, 785, 950, 953, 983
LweI	GCATC	2 cut(s)	720, 942
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	2 cut(s)	58, 586
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	3 cut(s)	143, 491, 695
MboI	GATC	3 cut(s)	141, 489, 693
MboII	GAAGA	4 cut(s)	164, 605, 739, 806
MluCI	AATT	5 cut(s)	43, 207, 350, 494, 804
MlyI	GAGTC	1 cut(s)	818
MseI	TTAA	4 cut(s)	12, 582, 747, 893
MspI	CCGG	1 cut(s)	1117
MspR9I	CCNGG	2 cut(s)	223, 1118
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	223
NciI	CCSGG	1 cut(s)	1118
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	3 cut(s)	141, 489, 693
NspI	RCATGY	2 cut(s)	67, 892
NspV	TTCGAA	1 cut(s)	862
PagI	TCATGA	1 cut(s)	657
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	5 cut(s)	268, 416, 563, 705, 925
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	7 cut(s)	529, 594, 772, 775, 940, 943, 973
PleI	GAGTC	1 cut(s)	817
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	817
Ppu21I	YACGTR	1 cut(s)	59
Psp1406I	AACGTT	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	221
PspCI	CACGTG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	532
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SaqAI	TTAA	4 cut(s)	12, 582, 747, 893
SatI	GCNGC	7 cut(s)	528, 593, 771, 774, 939, 942, 972
Sau3AI	GATC	3 cut(s)	141, 489, 693
SchI	GAGTC	1 cut(s)	818
ScrFI	CCNGG	2 cut(s)	223, 1118
SfaNI	GCATC	2 cut(s)	720, 942
SfcI	CTRYAG	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	862
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	5 cut(s)	43, 207, 350, 494, 804
SsiI	CCGC	1 cut(s)	899
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	1 cut(s)	1067
StyD4I	CCNGG	2 cut(s)	221, 1116
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	5 cut(s)	71, 453, 604, 665, 1155
TaiI	ACGT	2 cut(s)	61, 589
TaqI	TCGA	2 cut(s)	634, 862
TasI	AATT	5 cut(s)	43, 207, 350, 494, 804
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	5 cut(s)	268, 416, 563, 705, 925
Tru1I	TTAA	4 cut(s)	12, 582, 747, 893
Tru9I	TTAA	4 cut(s)	12, 582, 747, 893
TscAI	CASTG	2 cut(s)	456, 953
TseI	GCWGC	7 cut(s)	527, 592, 770, 773, 938, 941, 971
TspDTI	ATGAA	8 cut(s)	17, 201, 285, 413, 512, 643, 674, 765
TspRI	CASTG	2 cut(s)	456, 953
Van91I	CCANNNNNTGG	1 cut(s)	412
XceI	RCATGY	2 cut(s)	67, 892
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.