Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

68907034 .. 68909935

Gene Structure 2902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCAGACTCTATGCACTGTAATCCTCTATATAAAGAGGCCCATATTATCAATGAGAAAGCACAGTGATTTCCTCTCAATTTCAGTTTCTCTAAAACAGAAACAAGTGATTGGGCCTGAAGATGGAGTCGAGCAGATTCAGGTACTTCCTGCAGTTGAGGATAAGTATGGTGGAGTTGTTGTGGAATTGAAAGGTGATCAAACCTTGGATTCTGAGGTTTATACTTCTTCGCTCAGATTTTCAATGTCACAATGGAAACAAAAGGGGAAGAAGGGCGTTTGGATCAAATTGCCTAAGCAACTCTCGAACCTTGTTGATGTGACAGTTAAGGAAGGCTTTAGGTACCACCATGCCGAACCAGATTACCTAATGCTGGTGCATTGGATACCTGAAACAGTTGATCCTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCGTAAGCAGTAAGAGAGAGTTGCTTGTGGTTCAGGAGGCCAATGGCTTTTTCCGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTTGATGAAGGTGAGGATATTTTCGCAGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTTGTGGAAATGTTAGCATTTAGGCACAGCCACAAGGCATTCTTTAGAAAATCGGATTTGTTTTTCATTTGCATGTTAAAACCACATTCCTTTGAAATCCAGAAGCAGGATTTAGAGATTGCGGCAGCACAGTGGATGCCGATTGAGGACTATGCAGCTCAACCTTTCGTCAAAGAAAACAAACTGTTTGATGATGTAGCACAAATATGTTTAGCGAAATTGGATAAGGACTATGCTGGTTTTACTTCTCTGGCAACAACTACTTCCTCTGGGAAAACCAGCTACTTGTACTTCAACAAGGGCTATATGGGAAACCTACGAACTTCTGTTAATGATCAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

318

Amino Acids

36.05

Weight (kDa)

6.1

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	49 - 129	1.5e-28	Nudix hydrolase domain
NUDIX	PF00293	142 - 263	2.9e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	342
AciI	CCGC	1 cut(s)	731
AclWI	GGATC	2 cut(s)	290, 395
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	3 cut(s)	144, 344, 899
AfiI	CCNNNNNNNGG	3 cut(s)	122, 373, 715
AgsI	TTSAA	4 cut(s)	190, 243, 704, 904
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	566, 767, 891
AluI	AGCT	3 cut(s)	566, 767, 891
Alw26I	GTCTC	2 cut(s)	584, 596
AlwI	GGATC	2 cut(s)	290, 395
AoxI	GGCC	3 cut(s)	38, 113, 486
ApeKI	GCWGC	5 cut(s)	563, 566, 734, 764, 949
Asp718I	GGTACC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	39, 113
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	206, 560
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanI	GGYRCC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	553, 575, 746, 776
BccI	CCATC	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	2 cut(s)	196, 943
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	584, 596
BfmI	CTRYAG	2 cut(s)	150, 567
BfuI	GTATCC	1 cut(s)	378
BisI	GCNGC	6 cut(s)	564, 567, 732, 735, 765, 950
BlsI	GCNGC	6 cut(s)	565, 568, 733, 736, 766, 951
Bme1390I	CCNGG	1 cut(s)	428
BmgT120I	GGNCC	2 cut(s)	39, 113
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	735
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 373, 715
Bse1I	ACTGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	750
BseLI	CCNNNNNNNGG	3 cut(s)	122, 373, 715
BseMII	CTCAG	2 cut(s)	204, 247
BseNI	ACTGG	1 cut(s)	535
BseXI	GCAGC	4 cut(s)	553, 575, 746, 776
BshFI	GGCC	3 cut(s)	40, 115, 488
BshNI	GGYRCC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	122, 373, 715
BsmAI	GTCTC	2 cut(s)	584, 596
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	3 cut(s)	40, 115, 488
Bsp143I	GATC	4 cut(s)	196, 282, 400, 943
BspACI	CCGC	1 cut(s)	731
BspANI	GGCC	3 cut(s)	40, 115, 488
BspCNI	CTCAG	2 cut(s)	205, 246
BspLI	GGNNCC	1 cut(s)	344
BspMAI	CTGCAG	2 cut(s)	154, 571
BspPI	GGATC	2 cut(s)	290, 395
BspT107I	GGYRCC	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	4 cut(s)	196, 282, 400, 943
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	6 cut(s)	19, 65, 325, 397, 741, 795
Bst6I	CTCTTC	2 cut(s)	411, 582
BstDEI	CTNAG	3 cut(s)	213, 233, 294
BstF5I	GGATG	1 cut(s)	750
BstKTI	GATC	4 cut(s)	199, 285, 403, 946
BstMAI	GTCTC	2 cut(s)	584, 596
BstMBI	GATC	4 cut(s)	196, 282, 400, 943
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	2 cut(s)	150, 567
BstV1I	GCAGC	4 cut(s)	553, 575, 746, 776
BsuI	GTATCC	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	40, 115, 488
BtsCI	GGATG	1 cut(s)	750
BtsIMutI	CAGTG	3 cut(s)	15, 70, 746
Cfr13I	GGNCC	2 cut(s)	39, 113
Csp6I	GTAC	3 cut(s)	143, 343, 898
CviAII	CATG	2 cut(s)	350, 682
CviQI	GTAC	3 cut(s)	143, 343, 898
DdeI	CTNAG	3 cut(s)	213, 233, 294
DpnI	GATC	4 cut(s)	198, 284, 402, 945
DpnII	GATC	4 cut(s)	196, 282, 400, 943
Eam1104I	CTCTTC	2 cut(s)	411, 582
EarI	CTCTTC	2 cut(s)	411, 582
Eco130I	CCWWGG	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	353, 685
FalI	AAGNNNNNCTT	4 cut(s)	320, 352, 635, 667
FatI	CATG	2 cut(s)	349, 681
FbaI	TGATCA	2 cut(s)	196, 943
Fnu4HI	GCNGC	6 cut(s)	564, 567, 732, 735, 765, 950
FokI	GGATG	1 cut(s)	757
Fsp4HI	GCNGC	6 cut(s)	564, 567, 732, 735, 765, 950
GluI	GCNGC	6 cut(s)	564, 567, 732, 735, 765, 950
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	40, 115, 488
HapII	CCGG	1 cut(s)	427
Hin1II	CATG	2 cut(s)	353, 685
HinfI	GANTC	4 cut(s)	7, 126, 136, 209
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	2 cut(s)	206, 560
Hpy188I	TCNGA	4 cut(s)	214, 236, 503, 664
Hpy188III	TCNNGA	3 cut(s)	304, 482, 709
HpyAV	CCTTC	3 cut(s)	265, 326, 539
HpyCH4III	ACNGT	6 cut(s)	19, 65, 325, 397, 741, 795
HpyCH4V	TGCA	7 cut(s)	4, 15, 152, 379, 569, 681, 764
HpyF3I	CTNAG	3 cut(s)	213, 233, 294
Hsp92II	CATG	2 cut(s)	353, 685
KpnI	GGTACC	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	196, 943
Kzo9I	GATC	4 cut(s)	196, 282, 400, 943
Lsp1109I	GCAGC	4 cut(s)	553, 575, 746, 776
LweI	GCATC	1 cut(s)	735
MaeIII	GTNAC	2 cut(s)	246, 319
MalI	GATC	4 cut(s)	198, 284, 402, 945
MboI	GATC	4 cut(s)	196, 282, 400, 943
MboII	GAAGA	5 cut(s)	131, 219, 280, 398, 599
MluCI	AATT	5 cut(s)	78, 185, 287, 597, 827
MlyI	GAGTC	1 cut(s)	135
MseI	TTAA	3 cut(s)	327, 686, 939
MslI	CAYNNNNRTG	2 cut(s)	680, 814
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	647
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	4 cut(s)	196, 282, 400, 943
NlaIII	CATG	2 cut(s)	353, 685
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	2 cut(s)	246, 319
NspI	RCATGY	1 cut(s)	685
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	136, 209
PkrI	GCNGC	6 cut(s)	565, 568, 733, 736, 766, 951
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	39, 113
PstI	CTGCAG	2 cut(s)	154, 571
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	144, 344, 899
RsaNI	GTAC	3 cut(s)	143, 343, 898
RseI	CAYNNNNRTG	2 cut(s)	680, 814
SaqAI	TTAA	3 cut(s)	327, 686, 939
SatI	GCNGC	6 cut(s)	564, 567, 732, 735, 765, 950
Sau3AI	GATC	4 cut(s)	196, 282, 400, 943
Sau96I	GGNCC	2 cut(s)	39, 113
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	428
SfaNI	GCATC	1 cut(s)	735
SfcI	CTRYAG	2 cut(s)	150, 567
SmiMI	CAYNNNNRTG	2 cut(s)	680, 814
Sse9I	AATT	5 cut(s)	78, 185, 287, 597, 827
SsiI	CCGC	1 cut(s)	731
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	6 cut(s)	19, 65, 325, 397, 741, 795
TaqI	TCGA	2 cut(s)	129, 305
TasI	AATT	5 cut(s)	78, 185, 287, 597, 827
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	2 cut(s)	136, 209
Tru1I	TTAA	3 cut(s)	327, 686, 939
Tru9I	TTAA	3 cut(s)	327, 686, 939
TscAI	CASTG	3 cut(s)	22, 70, 746
TseFI	GTSAC	2 cut(s)	246, 319
TseI	GCWGC	5 cut(s)	563, 566, 734, 764, 949
Tsp45I	GTSAC	2 cut(s)	246, 319
TspDTI	ATGAA	2 cut(s)	558, 664
TspRI	CASTG	3 cut(s)	22, 70, 746
XceI	RCATGY	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.