Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

74385810 .. 74388157

Gene Structure 2348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG516800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTCGTGCATTGGATTCCTGAAACGGTTGATACTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCATGAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGGTCAGTGGCTTTTTTAGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTGAATGAAGGTGAGGATATTTTTGCAGCTGCTGTTAGAGAAGTCAAAGAAGAGACTGGAATTGAGACAGAATTTGTGGAAATTTTAGCATTTAGTCAAAGCCATGAGGAATTCTTTCGAAAATCAGATTTGTTTTTCGTTTGCATGTTAGAACCACATTCCTTTGACATCCAGAAGCAGAACCTAGAGATTGCAGCAGCCCAGTGGATGCCGATTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAGCTGTTTAATGATGTAGCACAAATATGTTTGGCAAAATCAGATAAGGACTATACCGGTTTTACTCCTCTGGAAACAACTACATCCTCCGGAAAAGCAAACTACTTGTACTTGAACAATCATGACATGGTCAAATTACTGACTTCTAGTACTGATCAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

194

Amino Acids

21.95

Weight (kDa)

4.85

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	19 - 140	1.1e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	509
AcsI	RAATTY	3 cut(s)	239, 249, 278
AfaI	GTAC	2 cut(s)	530, 571
AgeI	ACCGGT	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	535
AluBI	AGCT	3 cut(s)	197, 398, 424
AluI	AGCT	3 cut(s)	197, 398, 424
Alw26I	GTCTC	2 cut(s)	215, 227
AlwNI	CAGNNNCTG	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	509
ApeKI	GCWGC	5 cut(s)	194, 197, 362, 365, 395
ApoI	RAATTY	3 cut(s)	239, 249, 278
AsiGI	ACCGGT	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BauI	CACGAG	1 cut(s)	5
BbvI	GCAGC	5 cut(s)	184, 206, 374, 377, 407
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	215, 227
BfaI	CTAG	3 cut(s)	353, 567, 583
BisI	GCNGC	5 cut(s)	195, 198, 363, 366, 396
BlsI	GCNGC	5 cut(s)	196, 199, 364, 367, 397
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	59
BsaWI	WCCGGW	2 cut(s)	476, 509
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	3 cut(s)	166, 229, 370
BseAI	TCCGGA	1 cut(s)	509
BseGI	GGATG	3 cut(s)	336, 381, 503
BseNI	ACTGG	3 cut(s)	166, 229, 370
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	5 cut(s)	184, 206, 374, 377, 407
BshTI	ACCGGT	1 cut(s)	476
BsiSI	CCGG	3 cut(s)	58, 477, 510
BsmAI	GTCTC	2 cut(s)	215, 227
Bsp119I	TTCGAA	1 cut(s)	286
Bsp13I	TCCGGA	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	574
BspEI	TCCGGA	1 cut(s)	509
BspHI	TCATGA	2 cut(s)	81, 541
BspT104I	TTCGAA	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	166, 229, 370
BssAI	RCCGGY	1 cut(s)	476
BssMI	GATC	1 cut(s)	574
BssSI	CACGAG	1 cut(s)	5
Bst2BI	CACGAG	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	28, 89
Bst6I	CTCTTC	2 cut(s)	42, 213
BstBI	TTCGAA	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	336, 381, 503
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	2 cut(s)	215, 227
BstMBI	GATC	1 cut(s)	574
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	5 cut(s)	184, 206, 374, 377, 407
BtsCI	GGATG	3 cut(s)	336, 381, 503
BtsIMutI	CAGTG	2 cut(s)	127, 377
CaiI	CAGNNNCTG	1 cut(s)	200
CciI	TCATGA	2 cut(s)	81, 541
Cfr10I	RCCGGY	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	529, 570
CspAI	ACCGGT	1 cut(s)	476
CviAII	CATG	5 cut(s)	82, 272, 313, 542, 547
CviJI	RGCY	6 cut(s)	126, 197, 270, 368, 398, 424
CviKI_1	RGCY	6 cut(s)	126, 197, 270, 368, 398, 424
CviQI	GTAC	2 cut(s)	529, 570
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	42, 213
EarI	CTCTTC	2 cut(s)	42, 213
EcoRI	GAATTC	1 cut(s)	278
FaeI	CATG	5 cut(s)	85, 275, 316, 545, 550
FaiI	YATR	9 cut(s)	83, 148, 273, 314, 393, 448, 474, 543, 548
FatI	CATG	5 cut(s)	81, 271, 312, 541, 546
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	5 cut(s)	195, 198, 363, 366, 396
FokI	GGATG	3 cut(s)	323, 388, 490
Fsp4HI	GCNGC	5 cut(s)	195, 198, 363, 366, 396
FspBI	CTAG	3 cut(s)	353, 567, 583
GluI	GCNGC	5 cut(s)	195, 198, 363, 366, 396
GsuI	CTGGAG	1 cut(s)	183
HapII	CCGG	3 cut(s)	58, 477, 510
Hin1II	CATG	5 cut(s)	85, 275, 316, 545, 550
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	58, 477, 510
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	295, 463
Hpy188III	TCNNGA	7 cut(s)	20, 82, 113, 340, 491, 510, 542
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	2 cut(s)	28, 89
HpyCH4V	TGCA	5 cut(s)	10, 194, 312, 362, 395
Hsp92II	CATG	5 cut(s)	85, 275, 316, 545, 550
Kpn2I	TCCGGA	1 cut(s)	509
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	1 cut(s)	574
Lsp1109I	GCAGC	5 cut(s)	184, 206, 374, 377, 407
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	3 cut(s)	353, 567, 583
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	2 cut(s)	29, 230
MluCI	AATT	5 cut(s)	228, 239, 249, 278, 554
MnlI	CCTC	8 cut(s)	51, 91, 109, 175, 268, 379, 498, 517
MroI	TCCGGA	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	58, 477, 510
MspR9I	CCNGG	1 cut(s)	59
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	1 cut(s)	574
NlaIII	CATG	5 cut(s)	85, 275, 316, 545, 550
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	286
PagI	TCATGA	2 cut(s)	81, 541
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	16
PflFI	GACNNNGTC	1 cut(s)	548
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	196, 199, 364, 367, 397
PstNI	CAGNNNCTG	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	530, 571
RsaNI	GTAC	2 cut(s)	529, 570
RseI	CAYNNNNRTG	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	5 cut(s)	195, 198, 363, 366, 396
Sau3AI	GATC	1 cut(s)	574
ScaI	AGTACT	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	8 cut(s)	102, 120, 145, 181, 199, 354, 400, 426
SfaNI	GCATC	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	445
Sse9I	AATT	5 cut(s)	228, 239, 249, 278, 554
SspMI	CTAG	3 cut(s)	353, 567, 583
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	28, 89
TaqI	TCGA	1 cut(s)	286
TasI	AATT	5 cut(s)	228, 239, 249, 278, 554
TatI	WGTACW	2 cut(s)	528, 569
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	127, 377
TseI	GCWGC	5 cut(s)	194, 197, 362, 365, 395
TspDTI	ATGAA	2 cut(s)	98, 189
TspRI	CASTG	2 cut(s)	127, 377
Tth111I	GACNNNGTC	1 cut(s)	548
XapI	RAATTY	3 cut(s)	239, 249, 278
XceI	RCATGY	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	3 cut(s)	353, 567, 583
ZrmI	AGTACT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.