Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

57763478 .. 57765042

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0450300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGACGCAACAACCGCCAGACCCTTTGCCTAGATGGGCCGCAAACGGGACTGTGGAGAAACTGAAGTTTAATGCCAAAGGACAACCAGTTGCACCACCTCACACAGTTGCCAGGTTCTCTAGGTTCTTGGGGTGGCTCGCATTGGAGTCATCGTTCTTCCCGATTGATAATACTGATTGGAGAAATTTCTACAAGGCCTCAAACATGGATGCTGCTTGGGAGAGGATTAAGCCATTTGTTCGCCGAGTCTGCGAGCTCAAATTGAATGATAGATGGAAGAGTTATAAGTCACGACTCCGGAGGTTATACTACAAGCCAAACATCGGTACTCCAAGGAGATTTGCCTGCAGCCACCCTAGTGTGAACCAAGCCCATTGGAGGTCGCTCGTGGCTGAGTGGGATAAAAAGCCTAATCAGGAACGTGCTTTGACATATGCCAACAATAGGAAGGAGCTGAGGTCGAGTCACAATAATGGAACAAAGACTTTTGCACAGATGCGATATGAATATGAACAAGTGAATGGTTATGCTCCTGATCGCATAACATTTTTCACAATGACACATACTCGTGAAGACAGAACAGTAGTAGATGCCGAGTCAGCAGATATAATAGCCAAGTTCAAAAATGGATTAAAGGAGTATGAAGATAGGCAGGAGATACTGACAGATGAGATCCGGCACATTGTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

231

Amino Acids

27.33

Weight (kDa)

9.69

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	123 - 220	6.3e-18	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	300
AciI	CCGC	2 cut(s)	17, 42
AclWI	GGATC	1 cut(s)	670
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	331, 690
AfiI	CCNNNNNNNGG	4 cut(s)	48, 326, 381, 447
AgsI	TTSAA	2 cut(s)	268, 625
AjnI	CCWGG	1 cut(s)	113
AleI	CACNNNNGTG	1 cut(s)	360
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	2 cut(s)	259, 457
AluI	AGCT	2 cut(s)	259, 457
Alw21I	GWGCWC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	670
Aor13HI	TCCGGA	1 cut(s)	300
AoxI	GGCC	2 cut(s)	39, 198
ApeKI	GCWGC	2 cut(s)	215, 351
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	2 cut(s)	389, 570
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	202, 363
BccI	CCATC	2 cut(s)	30, 270
BciT130I	CCWGG	1 cut(s)	115
BfaI	CTAG	3 cut(s)	33, 123, 360
BfmI	CTRYAG	1 cut(s)	349
BisI	GCNGC	3 cut(s)	42, 216, 352
BlsI	GCNGC	3 cut(s)	43, 217, 353
Bme1390I	CCNGG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	3 cut(s)	202, 489, 583
BpiI	GAAGAC	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 446, 476
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 326, 381, 447
Bse1I	ACTGG	1 cut(s)	89
BseAI	TCCGGA	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	4 cut(s)	48, 326, 381, 447
BseMII	CTCAG	2 cut(s)	387, 449
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	202, 363
BshFI	GGCC	2 cut(s)	41, 200
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	301, 679
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	4 cut(s)	48, 326, 381, 447
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	41, 200
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp13I	TCCGGA	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	2 cut(s)	538, 675
BspACI	CCGC	2 cut(s)	17, 42
BspANI	GGCC	2 cut(s)	41, 200
BspCNI	CTCAG	2 cut(s)	388, 450
BspEI	TCCGGA	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	353
BspPI	GGATC	1 cut(s)	670
BsrGI	TGTACA	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	538, 675
BssSI	CACGAG	2 cut(s)	389, 570
BssT1I	CCWWGG	1 cut(s)	335
Bst2BI	CACGAG	2 cut(s)	389, 570
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	4 cut(s)	55, 109, 586, 693
Bst6I	CTCTTC	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	688
BstC8I	GCNNGC	3 cut(s)	141, 257, 349
BstDEI	CTNAG	2 cut(s)	396, 458
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	2 cut(s)	541, 678
BstMBI	GATC	2 cut(s)	538, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 252, 602
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	202, 363
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	41, 200
BtsCI	GGATG	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	141, 257, 349
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	330, 689
CviAII	CATG	1 cut(s)	208
CviQI	GTAC	2 cut(s)	330, 689
DdeI	CTNAG	2 cut(s)	396, 458
DpnI	GATC	2 cut(s)	540, 677
DpnII	GATC	2 cut(s)	538, 675
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	335
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	1 cut(s)	211
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	1 cut(s)	207
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	42, 216, 352
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	3 cut(s)	42, 216, 352
FspBI	CTAG	3 cut(s)	33, 123, 360
GluI	GCNGC	3 cut(s)	42, 216, 352
HaeIII	GGCC	2 cut(s)	41, 200
HapII	CCGG	2 cut(s)	301, 679
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	5 cut(s)	149, 249, 297, 466, 599
HpaII	CCGG	2 cut(s)	301, 679
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188III	TCNNGA	6 cut(s)	163, 294, 301, 419, 536, 572
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	445
HpyCH4III	ACNGT	4 cut(s)	55, 109, 586, 693
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	95, 351, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 252, 602
HpyF3I	CTNAG	2 cut(s)	396, 458
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	1 cut(s)	211
Kpn2I	TCCGGA	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	538, 675
LmnI	GCTCC	2 cut(s)	454, 538
Lsp1109I	GCAGC	2 cut(s)	202, 363
LweI	GCATC	3 cut(s)	202, 489, 583
MaeI	CTAG	3 cut(s)	33, 123, 360
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	291, 467
MalI	GATC	2 cut(s)	540, 677
MboI	GATC	2 cut(s)	538, 675
MboII	GAAGA	4 cut(s)	151, 292, 587, 659
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	2 cut(s)	187, 263
MlyI	GAGTC	5 cut(s)	158, 258, 291, 475, 608
MnlI	CCTC	6 cut(s)	111, 211, 219, 297, 375, 453
MroI	TCCGGA	1 cut(s)	300
MseI	TTAA	3 cut(s)	72, 231, 635
MslI	CAYNNNNRTG	3 cut(s)	360, 474, 570
MspI	CCGG	2 cut(s)	301, 679
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	16, 252, 602
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	2 cut(s)	538, 675
NlaIII	CATG	1 cut(s)	211
NmeAIII	GCCGAG	2 cut(s)	272, 622
NmuCI	GTSAC	2 cut(s)	291, 467
OliI	CACNNNNGTG	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	43, 217, 353
PleI	GAGTC	5 cut(s)	157, 257, 291, 474, 607
PpsI	GAGTC	5 cut(s)	157, 257, 291, 474, 607
PsiI	TTATAA	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	675
RsaI	GTAC	2 cut(s)	331, 690
RsaNI	GTAC	2 cut(s)	330, 689
RseI	CAYNNNNRTG	3 cut(s)	360, 474, 570
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	72, 231, 635
SatI	GCNGC	3 cut(s)	42, 216, 352
Sau3AI	GATC	2 cut(s)	538, 675
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	5 cut(s)	158, 258, 291, 475, 608
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	9 cut(s)	103, 119, 128, 261, 308, 386, 427, 459, 464
SfaNI	GCATC	3 cut(s)	202, 489, 583
SfcI	CTRYAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	3 cut(s)	360, 474, 570
Sse9I	AATT	2 cut(s)	187, 263
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	2 cut(s)	17, 42
SspMI	CTAG	3 cut(s)	33, 123, 360
SstI	GAGCTC	1 cut(s)	261
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	4 cut(s)	55, 109, 586, 693
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	464
TasI	AATT	2 cut(s)	187, 263
TatI	WGTACW	1 cut(s)	688
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	72, 231, 635
Tru9I	TTAA	3 cut(s)	72, 231, 635
TseFI	GTSAC	2 cut(s)	291, 467
TseI	GCWGC	2 cut(s)	215, 351
Tsp45I	GTSAC	2 cut(s)	291, 467
TspDTI	ATGAA	3 cut(s)	522, 528, 660
XapI	RAATTY	1 cut(s)	187
XspI	CTAG	3 cut(s)	33, 123, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.