Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

76684329 .. 76698320

Gene Structure 13992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG537000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCTCGTTCTTTCTCCAACGCTAAGCTTGTCTCCGCTCTCGTCTCCTACACAATCGCCAGACCTGGATACGTGGCGGGGTCACCAGGACTTGCGGCGGTTAGAGGAGACGCTGCTTCTGTGTCTAGAAGCATAAACTTGCGCAAGAAATCAGATAGAAATCCTTTCAATCAAGTCATGTCAGTTTCAATAAGTTCATCTTTTGTCGAGAAACAAGTGATTGGGCCTGAAGATGGAGTCGAGCAGATTCAGGTACTTCCTGCAGTTGAGGATAAGTATGGTGGAGTTGTTGTGGAATTGAAAGGTGATCAGCCCTTGGATTCCGAGGTTTATACTTCTAGGCTCAGATTTTCAATGTCACAATGGAAACAAAAGGGGAAGAGGGGCGTTTGGATCAAATTGCCTAAGCAACTCTCGAACCTTGTTGATGCGACAGTTAAGGAAGGATTTAGGTACCACCATGCCGAACCAGATTACCTAATGCTGGTGCATTGGATACCTGAAACAGTTGACACTCTTCCCCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCGTAAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGGCCAATGGCTCTTTCCGAGGTACAGGTGTATGGAAGTTGCCAACTGGAGTTGTTCATGAAGGTGAGGATATTTTTGCAGCTGCAGTTAGAGAAGTCAAAGAAGAGACGGGAATTGAGACAGAGTTTGTGGAAATGTTAGCATTTAGGCACAGCCACAAGGCATTCTTTAGAAAATCGGATTTGTTTTTCATTTGCATGTTAAAACCACATTCCCTTGATATCCAGAAGCAGGATTCAGAGATTGCGGCAACACAGTGGATGCCGATTGAGGACTATGCAGCTCAACCTTTCGTCAAAGAACACAAACTGTTTGATGATATAGCACAAATATGTTTAGCGAAATTGGATAATGACTATACTGGTTTTACTTCTCTGGCAACAACTACTTCCACTGGGAAAACCAGCTACTTGTACTTCAACAACGGCAAACCTACGAACTTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

347

Amino Acids

38.63

Weight (kDa)

7.13

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	86 - 166	1.2e-28	Nudix hydrolase domain
NUDIX	PF00293	179 - 301	2.3e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	143
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	453
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	5 cut(s)	36, 77, 95, 98, 842
AclWI	GGATC	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	4 cut(s)	255, 455, 619, 1010
AfiI	CCNNNNNNNGG	3 cut(s)	233, 484, 826
AgsI	TTSAA	5 cut(s)	169, 189, 301, 354, 1015
AjnI	CCWGG	2 cut(s)	64, 85
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	4 cut(s)	28, 677, 878, 1002
AluI	AGCT	4 cut(s)	28, 677, 878, 1002
Alw26I	GTCTC	5 cut(s)	37, 49, 102, 695, 707
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	2 cut(s)	224, 597
ApeKI	GCWGC	4 cut(s)	113, 674, 677, 875
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	75, 317, 671
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BanI	GGYRCC	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	100, 664, 686, 887
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	1036
BciT130I	CCWGG	2 cut(s)	66, 87
BciVI	GTATCC	2 cut(s)	62, 489
BclI	TGATCA	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	5 cut(s)	37, 49, 102, 695, 707
BfaI	CTAG	2 cut(s)	126, 339
BfmI	CTRYAG	2 cut(s)	261, 678
BfuI	GTATCC	2 cut(s)	62, 489
BisI	GCNGC	6 cut(s)	96, 114, 675, 678, 843, 876
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	6 cut(s)	97, 115, 676, 679, 844, 877
Bme1390I	CCNGG	3 cut(s)	66, 87, 539
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	3 cut(s)	66, 87, 539
BmrI	ACTGGG	1 cut(s)	999
BmsI	GCATC	2 cut(s)	418, 846
BmuI	ACTGGG	1 cut(s)	999
BpmI	CTGGAG	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	405
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	539
BsaAI	YACGTR	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	315, 324, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 484, 826
Bse1I	ACTGG	3 cut(s)	646, 961, 994
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	66, 87
BseDI	CCNNGG	3 cut(s)	315, 324, 613
BseGI	GGATG	1 cut(s)	861
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	233, 484, 826
BseMII	CTCAG	1 cut(s)	358
BseNI	ACTGG	3 cut(s)	646, 961, 994
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	4 cut(s)	100, 664, 686, 887
BshFI	GGCC	2 cut(s)	226, 599
BshNI	GGYRCC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	538
BslI	CCNNNNNNNGG	3 cut(s)	233, 484, 826
BsmAI	GTCTC	5 cut(s)	37, 49, 102, 695, 707
BsmBI	CGTCTC	3 cut(s)	49, 102, 695
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	2 cut(s)	226, 599
Bsp143I	GATC	2 cut(s)	307, 393
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	5 cut(s)	36, 77, 95, 98, 842
BspANI	GGCC	2 cut(s)	226, 599
BspCNI	CTCAG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	455
BspMAI	CTGCAG	2 cut(s)	265, 682
BspPI	GGATC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	453
BsrBI	CCGCTC	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	646, 961, 994
BssECI	CCNNGG	3 cut(s)	315, 324, 613
BssMI	GATC	2 cut(s)	307, 393
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	66, 87
Bst4CI	ACNGT	5 cut(s)	436, 508, 569, 852, 906
Bst6I	CTCTTC	3 cut(s)	374, 522, 693
BstBAI	YACGTR	1 cut(s)	73
BstDEI	CTNAG	3 cut(s)	24, 344, 405
BstEII	GGTNACC	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	310, 396
BstMAI	GTCTC	5 cut(s)	37, 49, 102, 695, 707
BstMBI	GATC	2 cut(s)	307, 393
BstNI	CCWGG	2 cut(s)	66, 87
BstNSI	RCATGY	1 cut(s)	796
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	3 cut(s)	64, 85, 537
BstSFI	CTRYAG	2 cut(s)	261, 678
BstV1I	GCAGC	4 cut(s)	100, 664, 686, 887
BsuI	GTATCC	2 cut(s)	62, 489
BsuRI	GGCC	2 cut(s)	226, 599
BtsCI	GGATG	1 cut(s)	861
BtsIMutI	CAGTG	2 cut(s)	857, 987
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	4 cut(s)	254, 454, 618, 1009
CviAII	CATG	4 cut(s)	178, 461, 653, 793
CviQI	GTAC	4 cut(s)	254, 454, 618, 1009
DdeI	CTNAG	3 cut(s)	24, 344, 405
DpnI	GATC	2 cut(s)	309, 395
DpnII	GATC	2 cut(s)	307, 393
Eam1104I	CTCTTC	3 cut(s)	374, 522, 693
EarI	CTCTTC	3 cut(s)	374, 522, 693
Eco130I	CCWWGG	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	817
Eco57I	CTGAAG	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	81
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	64, 85
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	3 cut(s)	49, 102, 695
FaeI	CATG	4 cut(s)	181, 464, 656, 796
FalI	AAGNNNNNCTT	4 cut(s)	184, 216, 746, 778
FatI	CATG	4 cut(s)	177, 460, 652, 792
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	6 cut(s)	96, 114, 675, 678, 843, 876
FokI	GGATG	1 cut(s)	868
Fsp4HI	GCNGC	6 cut(s)	96, 114, 675, 678, 843, 876
FspBI	CTAG	2 cut(s)	126, 339
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	6 cut(s)	96, 114, 675, 678, 843, 876
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	226, 599
HapII	CCGG	1 cut(s)	538
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	181, 464, 656, 796
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	4 cut(s)	237, 247, 320, 830
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	3 cut(s)	75, 317, 671
Hpy166II	GTNNAC	2 cut(s)	511, 565
Hpy188I	TCNGA	6 cut(s)	154, 325, 347, 614, 775, 835
Hpy188III	TCNNGA	6 cut(s)	126, 208, 415, 593, 653, 820
Hpy8I	GTNNAC	2 cut(s)	511, 565
HpyAV	CCTTC	2 cut(s)	437, 650
HpyCH4III	ACNGT	5 cut(s)	436, 508, 569, 852, 906
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	263, 490, 674, 680, 792, 875
HpyF3I	CTNAG	3 cut(s)	24, 344, 405
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	181, 464, 656, 796
HspAI	GCGC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	307, 393
Lsp1109I	GCAGC	4 cut(s)	100, 664, 686, 887
LweI	GCATC	2 cut(s)	418, 846
MaeI	CTAG	2 cut(s)	126, 339
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	81, 357
MalI	GATC	2 cut(s)	309, 395
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	2 cut(s)	307, 393
MboII	GAAGA	4 cut(s)	242, 391, 509, 710
MluCI	AATT	4 cut(s)	296, 398, 708, 938
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	9 cut(s)	98, 262, 319, 375, 571, 589, 608, 655, 859
MseI	TTAA	3 cut(s)	438, 797, 1042
MslI	CAYNNNNRTG	3 cut(s)	657, 791, 925
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	1 cut(s)	538
MspR9I	CCNGG	3 cut(s)	66, 87, 539
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	2 cut(s)	66, 87
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	2 cut(s)	307, 393
NlaIII	CATG	4 cut(s)	181, 464, 656, 796
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	81, 357
NsbI	TGCGCA	1 cut(s)	143
NspI	RCATGY	1 cut(s)	796
PagI	TCATGA	1 cut(s)	652
PctI	GAATGC	1 cut(s)	758
PfeI	GAWTC	3 cut(s)	247, 320, 830
PkrI	GCNGC	6 cut(s)	97, 115, 676, 679, 844, 877
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	64, 85
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	64, 85
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	2 cut(s)	265, 682
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	4 cut(s)	255, 455, 619, 1010
RsaNI	GTAC	4 cut(s)	254, 454, 618, 1009
RseI	CAYNNNNRTG	3 cut(s)	657, 791, 925
SaqAI	TTAA	3 cut(s)	438, 797, 1042
SatI	GCNGC	6 cut(s)	96, 114, 675, 678, 843, 876
Sau3AI	GATC	2 cut(s)	307, 393
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	3 cut(s)	66, 87, 539
SfaNI	GCATC	2 cut(s)	418, 846
SfcI	CTRYAG	2 cut(s)	261, 678
SmiMI	CAYNNNNRTG	3 cut(s)	657, 791, 925
Sse9I	AATT	4 cut(s)	296, 398, 708, 938
SsiI	CCGC	5 cut(s)	36, 77, 95, 98, 842
SspMI	CTAG	2 cut(s)	126, 339
StyD4I	CCNGG	3 cut(s)	64, 85, 537
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	5 cut(s)	436, 508, 569, 852, 906
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	207, 240, 416
TasI	AATT	4 cut(s)	296, 398, 708, 938
TatI	WGTACW	1 cut(s)	1008
TauI	GCSGC	2 cut(s)	98, 845
TfiI	GAWTC	3 cut(s)	247, 320, 830
Tru1I	TTAA	3 cut(s)	438, 797, 1042
Tru9I	TTAA	3 cut(s)	438, 797, 1042
TscAI	CASTG	2 cut(s)	857, 994
TseFI	GTSAC	2 cut(s)	81, 357
TseI	GCWGC	4 cut(s)	113, 674, 677, 875
Tsp45I	GTSAC	2 cut(s)	81, 357
TspDTI	ATGAA	4 cut(s)	186, 641, 669, 775
TspRI	CASTG	2 cut(s)	857, 994
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	796
XspI	CTAG	2 cut(s)	126, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.