Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

57767572 .. 57768080

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0450400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCCAAGGTTCCCATGAACCCGTTTCTCCTTCTCAGCAAGAGATGGTATAGTACTGAAAGAGTGCAGCCGGCAGTGTCAACAATGAGGAGGATGGCAACAACAGACTCCTCCGGTAGCAGCGGTCGAGCCGTCGCAGATGATCAGGAGAAGAAGAAAGTGTTTTGGATGAGAGACCCAAAGACGGGGAACTGGATTCCAGAGAATCACTTTGAAGAGATTGATGCTGCAGAGCTCAGGGAGAAGCTCCTCAACAAGCACAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

89

Amino Acids

10.32

Weight (kDa)

9.63

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	14 - 87	1.5e-17	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	184, 185
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	2 cut(s)	235, 247
AluI	AGCT	2 cut(s)	235, 247
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	67, 120, 227
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	79, 132, 214
BccI	CCATC	2 cut(s)	39, 88
BceAI	ACGGC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	68, 121, 228
BlsI	GCNGC	3 cut(s)	69, 122, 229
BmcAI	AGTACT	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 185
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	99, 174
BseLI	CCNNNNNNNGG	2 cut(s)	184, 185
BseMII	CTCAG	2 cut(s)	49, 250
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	3 cut(s)	100, 103, 239
BseXI	GCAGC	3 cut(s)	79, 132, 214
BsgI	GTGCAG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	71, 114
BslI	CCNNNNNNNGG	2 cut(s)	184, 185
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	48, 249
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	35, 236
BstF5I	GGATG	2 cut(s)	99, 174
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	3 cut(s)	79, 132, 214
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	99, 174
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	5 cut(s)	5, 70, 131, 235, 247
CviKI_1	RGCY	5 cut(s)	5, 70, 131, 235, 247
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	35, 236
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	19
FaiI	YATR	2 cut(s)	17, 51
FatI	CATG	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	68, 121, 228
FokI	GGATG	2 cut(s)	106, 181
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	68, 121, 228
GluI	GCNGC	3 cut(s)	68, 121, 228
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	71, 114
Hin1II	CATG	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	107, 196, 205
HpaII	CCGG	2 cut(s)	71, 114
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188III	TCNNGA	2 cut(s)	146, 200
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	67, 230
HpyF3I	CTNAG	2 cut(s)	35, 236
Hsp92II	CATG	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	6 cut(s)	84, 127, 131, 178, 213, 223
Lsp1109I	GCAGC	3 cut(s)	79, 132, 214
LweI	GCATC	1 cut(s)	214
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	163, 166, 227
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	4 cut(s)	81, 84, 121, 260
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	268
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	2 cut(s)	71, 114
NaeI	GCCGGC	1 cut(s)	72
NdeII	GATC	1 cut(s)	142
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	196, 205
PkrI	GCNGC	3 cut(s)	69, 122, 229
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	268
SatI	GCNGC	3 cut(s)	68, 121, 228
Sau3AI	GATC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	4 cut(s)	12, 237, 249, 267
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	228
SsiI	CCGC	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	1 cut(s)	127
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	196, 205
Tru1I	TTAA	1 cut(s)	268
Tru9I	TTAA	1 cut(s)	268
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	3 cut(s)	67, 120, 227
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	81
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.