Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

72735902 .. 72740510

Gene Structure 4609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTTATTAGTTTTGAGGGAATTTGGCTTAAGCTACTGGTATAACGAGCTGAGCTTGTTCCAGTTGCTGTTGAGTCCTGCTTGCAGCACATTGTTTACTTGTTTCTTCATATGCCCAGAAGATAGAAATCCTTTCAATCAAGTCATGTCAGTTTCAATAAGTTCATCTTTTGTCGAGAAACAAGTGATTGGGCCTGAAGATGGAGTCGAGCAGATTCAGGTACTTCCTGCAGTTGAGGATAAGTATGGTGGAGTTGTTGTGGAATTGAAAGGTGATCAAACCTTGGATTCTGAGGTTTATTCTTCTTCGCTCAGATTTTCAATGTCACAATGGAAACAAAAGGGGAAGAAGGGCGTTTGGATCAAATTGCCTAAGCAACTCTCGAACCTTGTTGATGTGACAGTTAAGGAAGGATTTAGGTACCACCATGCCGAACCAGATTACCTAATGCTGGTGCATTGGATACCTGAAACAGTTGATCCTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCGTAAGCAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGGCCAATGGCTTTTTCCGAGATACAGGTGTATGGAAGCTGCCAACTGGAGTTGTTGATGAAGGTGAGGATATTTTCGCAGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTTGTGGAAATGTTAGCATTTAGGCACAGCCACAAGGCATTCTTTAGAAAATCGGATTTGTTTTTCATTTGCATGTTAAAACCACATTCCTTTGAAATCCAGAAGCAGGATTTAGAGATTGCGGCAGCACAGTGGATGCCGATTGAGGACTATGCAGCTCAACCTTTCGTCAAAGAAAACAAACTGTTTGATGATGTAGCACAAATATGTTTAGCGAAATTGGATAAGGACTATGCTGGTTTTACTTCTCTGGCAACAACTACTTCCTCTGGGAAAACCAGCTACTTGTACTTCAACAAGGGCTATATGGGAAACCTACGAAATTCTGTTAATGATCAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

344

Amino Acids

39.02

Weight (kDa)

5.22

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	75 - 155	1.8e-28	Nudix hydrolase domain
NUDIX	PF00293	168 - 289	1.6e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	420
AciI	CCGC	1 cut(s)	809
AclWI	GGATC	2 cut(s)	368, 473
AcsI	RAATTY	2 cut(s)	20, 1009
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	3 cut(s)	222, 422, 977
AfiI	CCNNNNNNNGG	3 cut(s)	200, 451, 793
AflII	CTTAAG	1 cut(s)	28
AgsI	TTSAA	6 cut(s)	136, 156, 268, 321, 782, 982
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	7 cut(s)	33, 49, 54, 601, 644, 845, 969
AluI	AGCT	7 cut(s)	33, 49, 54, 601, 644, 845, 969
Alw26I	GTCTC	2 cut(s)	662, 674
AlwI	GGATC	2 cut(s)	368, 473
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	2 cut(s)	191, 564
ApeKI	GCWGC	7 cut(s)	84, 601, 641, 644, 812, 842, 1027
ApoI	RAATTY	2 cut(s)	20, 1009
Asp718I	GGTACC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	284, 638
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BanI	GGYRCC	1 cut(s)	420
BbvI	GCAGC	6 cut(s)	96, 588, 631, 653, 824, 854
BccI	CCATC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	456
BclI	TGATCA	2 cut(s)	274, 1021
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	662, 674
BfmI	CTRYAG	2 cut(s)	228, 645
BfrI	CTTAAG	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	8 cut(s)	85, 602, 642, 645, 810, 813, 843, 1028
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	8 cut(s)	86, 603, 643, 646, 811, 814, 844, 1029
Bme1390I	CCNGG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	1 cut(s)	813
BpmI	CTGGAG	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 451, 793
Bse1I	ACTGG	3 cut(s)	41, 61, 613
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	828
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	200, 451, 793
BseMII	CTCAG	3 cut(s)	41, 282, 325
BseNI	ACTGG	3 cut(s)	41, 61, 613
BseXI	GCAGC	6 cut(s)	96, 588, 631, 653, 824, 854
BshFI	GGCC	2 cut(s)	193, 566
BshNI	GGYRCC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	505
BslI	CCNNNNNNNGG	3 cut(s)	200, 451, 793
BsmAI	GTCTC	2 cut(s)	662, 674
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	2 cut(s)	193, 566
Bsp143I	GATC	4 cut(s)	274, 360, 478, 1021
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	809
BspANI	GGCC	2 cut(s)	193, 566
BspCNI	CTCAG	3 cut(s)	42, 283, 324
BspLI	GGNNCC	1 cut(s)	422
BspMAI	CTGCAG	2 cut(s)	232, 649
BspPI	GGATC	2 cut(s)	368, 473
BspT107I	GGYRCC	1 cut(s)	420
BspTI	CTTAAG	1 cut(s)	28
BsrI	ACTGG	3 cut(s)	41, 61, 613
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	274, 360, 478, 1021
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	403, 475, 819, 873
Bst6I	CTCTTC	2 cut(s)	489, 660
BstAFI	CTTAAG	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	50, 291, 311, 372
BstF5I	GGATG	1 cut(s)	828
BstKTI	GATC	4 cut(s)	277, 363, 481, 1024
BstMAI	GTCTC	2 cut(s)	662, 674
BstMBI	GATC	4 cut(s)	274, 360, 478, 1021
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	228, 645
BstV1I	GCAGC	6 cut(s)	96, 588, 631, 653, 824, 854
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	193, 566
BtsCI	GGATG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	824
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	221, 421, 976
CviAII	CATG	3 cut(s)	145, 428, 760
CviQI	GTAC	3 cut(s)	221, 421, 976
DdeI	CTNAG	4 cut(s)	50, 291, 311, 372
DpnI	GATC	4 cut(s)	276, 362, 480, 1023
DpnII	GATC	4 cut(s)	274, 360, 478, 1021
Eam1104I	CTCTTC	2 cut(s)	489, 660
EarI	CTCTTC	2 cut(s)	489, 660
Eco130I	CCWWGG	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	148, 431, 763
FalI	AAGNNNNNCTT	4 cut(s)	151, 183, 713, 745
FatI	CATG	3 cut(s)	144, 427, 759
FauNDI	CATATG	1 cut(s)	110
FbaI	TGATCA	2 cut(s)	274, 1021
Fnu4HI	GCNGC	8 cut(s)	85, 602, 642, 645, 810, 813, 843, 1028
FokI	GGATG	1 cut(s)	835
Fsp4HI	GCNGC	8 cut(s)	85, 602, 642, 645, 810, 813, 843, 1028
GluI	GCNGC	8 cut(s)	85, 602, 642, 645, 810, 813, 843, 1028
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	193, 566
HapII	CCGG	1 cut(s)	505
Hin1II	CATG	3 cut(s)	148, 431, 763
HinfI	GANTC	4 cut(s)	73, 204, 214, 287
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	2 cut(s)	284, 638
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	4 cut(s)	292, 314, 581, 742
Hpy188III	TCNNGA	4 cut(s)	175, 382, 560, 787
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	3 cut(s)	343, 404, 617
HpyCH4III	ACNGT	4 cut(s)	403, 475, 819, 873
HpyCH4V	TGCA	6 cut(s)	84, 230, 457, 647, 759, 842
HpyF3I	CTNAG	4 cut(s)	50, 291, 311, 372
Hsp92II	CATG	3 cut(s)	148, 431, 763
KpnI	GGTACC	1 cut(s)	424
Ksp22I	TGATCA	2 cut(s)	274, 1021
Kzo9I	GATC	4 cut(s)	274, 360, 478, 1021
Lsp1109I	GCAGC	6 cut(s)	96, 588, 631, 653, 824, 854
LweI	GCATC	1 cut(s)	813
MaeIII	GTNAC	2 cut(s)	324, 397
MalI	GATC	4 cut(s)	276, 362, 480, 1023
MboI	GATC	4 cut(s)	274, 360, 478, 1021
MboII	GAAGA	8 cut(s)	97, 131, 209, 294, 297, 358, 476, 677
MluCI	AATT	6 cut(s)	20, 263, 365, 675, 905, 1009
MlyI	GAGTC	2 cut(s)	82, 213
MseI	TTAA	4 cut(s)	29, 405, 764, 1017
MslI	CAYNNNNRTG	2 cut(s)	758, 892
MspA1I	CMGCKG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	725
NciI	CCSGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	4 cut(s)	274, 360, 478, 1021
NlaIII	CATG	3 cut(s)	148, 431, 763
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	2 cut(s)	324, 397
NspI	RCATGY	1 cut(s)	763
PctI	GAATGC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	214, 287
PkrI	GCNGC	8 cut(s)	86, 603, 643, 646, 811, 814, 844, 1029
PleI	GAGTC	2 cut(s)	81, 212
PpsI	GAGTC	2 cut(s)	81, 212
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	191
PstI	CTGCAG	2 cut(s)	232, 649
PstNI	CAGNNNCTG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	3 cut(s)	222, 422, 977
RsaNI	GTAC	3 cut(s)	221, 421, 976
RseI	CAYNNNNRTG	2 cut(s)	758, 892
SaqAI	TTAA	4 cut(s)	29, 405, 764, 1017
SatI	GCNGC	8 cut(s)	85, 602, 642, 645, 810, 813, 843, 1028
Sau3AI	GATC	4 cut(s)	274, 360, 478, 1021
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	2 cut(s)	82, 213
ScrFI	CCNGG	1 cut(s)	506
SfaNI	GCATC	1 cut(s)	813
SfcI	CTRYAG	2 cut(s)	228, 645
SmiMI	CAYNNNNRTG	2 cut(s)	758, 892
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	6 cut(s)	20, 263, 365, 675, 905, 1009
SsiI	CCGC	1 cut(s)	809
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	4 cut(s)	403, 475, 819, 873
TaqI	TCGA	3 cut(s)	174, 207, 383
TasI	AATT	6 cut(s)	20, 263, 365, 675, 905, 1009
TatI	WGTACW	1 cut(s)	975
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	2 cut(s)	214, 287
Tru1I	TTAA	4 cut(s)	29, 405, 764, 1017
Tru9I	TTAA	4 cut(s)	29, 405, 764, 1017
TscAI	CASTG	1 cut(s)	824
TseFI	GTSAC	2 cut(s)	324, 397
TseI	GCWGC	7 cut(s)	84, 601, 641, 644, 812, 842, 1027
Tsp45I	GTSAC	2 cut(s)	324, 397
TspDTI	ATGAA	4 cut(s)	97, 153, 636, 742
TspRI	CASTG	1 cut(s)	824
Vha464I	CTTAAG	1 cut(s)	28
XapI	RAATTY	2 cut(s)	20, 1009
XceI	RCATGY	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.