Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

32048582 .. 32053929

Gene Structure 5348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTCAGTTTCAACAAGTTCATGCGCTGTTGCAAAACAAGGGTTGATGCCCGAAAGTGGAGTTGAGCAGATTGAATTGCTCAGGGCACGTGATGATATACATGGGGGTGTCGTTGTAGACATGGATGACCAACCTATGGATTCTGATGTTTTCGCTTCCTTGCTCAAAGCTTCACTGTCAGAATGGAGGCAAAAGGAAAAGAAGGGCGTTTGGATCAAATTGCCGATTGAACTCTCAAATCTTGTTCATCCTGCAGTTAAGGAAGGATTTACTTATCACCATGCTGAATCAGATTACATAATGCTGAAACGTTGGCTGCCTGAAACTGTTGATACTCTTCCCGCAAATGCTTCTCATCGAGTAGGCATTGGTGCTTTCATCATGAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGATCAATGGCAGATTCAAAGATACGGGTATCTGGAAGATGCCAACTGGGGCTGTTAATGAAGGTGAGGATATATGTGCAGCCGCAGTTAGGGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTCGTGGAAATATTAGCCTTCAGGCACAGCCACAAGTCATTCTTTCGAAAATCAGATTTGTTTTTCGTTTGCATGTTGAAACCACAAAGTTTTGACATCCAGGAACAGAATCAAGAGATTGCCGCAGCCCAGTGGATGCCGTTTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAACTCTTTGATTATGTAGCAGATATCTGTTTGGCAAAAACAGATAAGCAGTATACCGGTTTTACTCCTCTAGCAACAACTACATCATCCGGAAAAGCAAGCTACTTGTATTTTAACAACCGAGATATGGGTGATGACCTACTCACTTCTGATAAACAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

295

Amino Acids

33.15

Weight (kDa)

5.18

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	27 - 106	2.2e-31	Nudix hydrolase domain
NUDIX	PF00293	119 - 239	4.5e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccI	GTMKAC	2 cut(s)	117, 773
AccIII	TCCGGA	1 cut(s)	809
AciI	CCGC	3 cut(s)	342, 498, 663
AclI	AACGTT	1 cut(s)	310
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	544
AcvI	CACGTG	1 cut(s)	89
AfiI	CCNNNNNNNGG	4 cut(s)	56, 136, 504, 847
AgeI	ACCGGT	1 cut(s)	776
AgsI	TTSAA	5 cut(s)	12, 74, 230, 433, 619
AjnI	CCWGG	1 cut(s)	639
AluBI	AGCT	3 cut(s)	170, 698, 822
AluI	AGCT	3 cut(s)	170, 698, 822
Alw26I	GTCTC	2 cut(s)	515, 527
AlwI	GGATC	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	809
ApeKI	GCWGC	4 cut(s)	316, 494, 665, 695
AsiGI	ACCGGT	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	26
AsuHPI	GGTGA	3 cut(s)	269, 491, 863
AsuII	TTCGAA	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	88
BbrPI	CACGTG	1 cut(s)	89
BbvI	GCAGC	4 cut(s)	303, 506, 677, 707
BceAI	ACGGC	1 cut(s)	664
BciT130I	CCWGG	1 cut(s)	641
BcoDI	GTCTC	2 cut(s)	515, 527
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	6 cut(s)	317, 495, 498, 663, 666, 696
BlsI	GCNGC	6 cut(s)	318, 496, 499, 664, 667, 697
Bme1390I	CCNGG	1 cut(s)	641
BmrFI	CCNGG	1 cut(s)	641
BmrI	ACTGGG	2 cut(s)	471, 664
BmsI	GCATC	3 cut(s)	36, 444, 666
BmuI	ACTGGG	2 cut(s)	471, 664
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu14I	TTCGAA	1 cut(s)	586
BsaAI	YACGTR	1 cut(s)	89
BsaWI	WCCGGW	2 cut(s)	776, 809
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 136, 504, 847
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	2 cut(s)	466, 670
BseAI	TCCGGA	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	641
BseGI	GGATG	5 cut(s)	130, 247, 636, 681, 806
BseLI	CCNNNNNNNGG	4 cut(s)	56, 136, 504, 847
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	466, 670
BseRI	GAGGAG	1 cut(s)	777
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	4 cut(s)	303, 506, 677, 707
BsgI	GTGCAG	1 cut(s)	513
BshTI	ACCGGT	1 cut(s)	776
BsiSI	CCGG	2 cut(s)	777, 810
BslI	CCNNNNNNNGG	4 cut(s)	56, 136, 504, 847
BsmAI	GTCTC	2 cut(s)	515, 527
Bsp119I	TTCGAA	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp13I	TCCGGA	1 cut(s)	809
Bsp143I	GATC	2 cut(s)	213, 417
BspACI	CCGC	3 cut(s)	342, 498, 663
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	809
BspHI	TCATGA	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	221
BspT104I	TTCGAA	1 cut(s)	586
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	2 cut(s)	466, 670
BssAI	RCCGGY	1 cut(s)	776
BssMI	GATC	2 cut(s)	213, 417
BssNAI	GTATAC	1 cut(s)	774
Bst1107I	GTATAC	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	3 cut(s)	177, 328, 389
Bst6I	CTCTTC	2 cut(s)	342, 513
BstBAI	YACGTR	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	5 cut(s)	130, 247, 636, 681, 806
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	216, 420
BstMAI	GTCTC	2 cut(s)	515, 527
BstMBI	GATC	2 cut(s)	213, 417
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	639
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	303, 506, 677, 707
BstZ17I	GTATAC	1 cut(s)	774
BtsCI	GGATG	5 cut(s)	130, 247, 636, 681, 806
BtsIMutI	CAGTG	2 cut(s)	173, 677
Cac8I	GCNNGC	1 cut(s)	820
CciI	TCATGA	1 cut(s)	381
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	776
CspAI	ACCGGT	1 cut(s)	776
CviAII	CATG	6 cut(s)	21, 101, 121, 281, 382, 613
CviJI	RGCY	9 cut(s)	170, 316, 467, 497, 557, 570, 668, 698, 822
CviKI_1	RGCY	9 cut(s)	170, 316, 467, 497, 557, 570, 668, 698, 822
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	215, 419
DpnII	GATC	2 cut(s)	213, 417
Eam1104I	CTCTTC	2 cut(s)	342, 513
EarI	CTCTTC	2 cut(s)	342, 513
Eco32I	GATATC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	544
Eco72I	CACGTG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	639
EcoRV	GATATC	1 cut(s)	745
FaeI	CATG	6 cut(s)	24, 104, 124, 284, 385, 616
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FatI	CATG	6 cut(s)	20, 100, 120, 280, 381, 612
FauI	CCCGC	1 cut(s)	349
FblI	GTMKAC	2 cut(s)	117, 773
Fnu4HI	GCNGC	6 cut(s)	317, 495, 498, 663, 666, 696
FokI	GGATG	5 cut(s)	137, 234, 623, 688, 793
Fsp4HI	GCNGC	6 cut(s)	317, 495, 498, 663, 666, 696
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	6 cut(s)	317, 495, 498, 663, 666, 696
HapII	CCGG	2 cut(s)	777, 810
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	6 cut(s)	24, 104, 124, 284, 385, 616
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	4 cut(s)	140, 287, 429, 649
HpaII	CCGG	2 cut(s)	777, 810
HphI	GGTGA	3 cut(s)	269, 491, 863
Hpy166II	GTNNAC	2 cut(s)	118, 774
Hpy188I	TCNGA	5 cut(s)	145, 181, 292, 595, 871
Hpy188III	TCNNGA	5 cut(s)	382, 413, 448, 653, 810
Hpy8I	GTNNAC	2 cut(s)	118, 774
HpyAV	CCTTC	4 cut(s)	196, 257, 470, 568
HpyCH4III	ACNGT	3 cut(s)	177, 328, 389
HpyCH4IV	ACGT	2 cut(s)	88, 310
HpyCH4V	TGCA	5 cut(s)	32, 254, 494, 612, 695
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	88, 310
Hsp92II	CATG	6 cut(s)	24, 104, 124, 284, 385, 616
HspAI	GCGC	1 cut(s)	24
Kpn2I	TCCGGA	1 cut(s)	809
Kzo9I	GATC	2 cut(s)	213, 417
Lsp1109I	GCAGC	4 cut(s)	303, 506, 677, 707
LweI	GCATC	3 cut(s)	36, 444, 666
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	2 cut(s)	88, 310
MalI	GATC	2 cut(s)	215, 419
MboI	GATC	2 cut(s)	213, 417
MboII	GAAGA	3 cut(s)	329, 463, 530
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	3 cut(s)	74, 218, 528
MnlI	CCTC	5 cut(s)	180, 391, 475, 679, 798
MroI	TCCGGA	1 cut(s)	809
MseI	TTAA	3 cut(s)	258, 471, 834
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	2 cut(s)	777, 810
MspR9I	CCNGG	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	641
NdeII	GATC	2 cut(s)	213, 417
NlaIII	CATG	6 cut(s)	24, 104, 124, 284, 385, 616
NspI	RCATGY	1 cut(s)	616
NspV	TTCGAA	1 cut(s)	586
PagI	TCATGA	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	140, 287, 429, 649
PflMI	CCANNNNNTGG	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	639
PinAI	ACCGGT	1 cut(s)	776
PkrI	GCNGC	6 cut(s)	318, 496, 499, 664, 667, 697
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	89
Psp1406I	AACGTT	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	639
PspCI	CACGTG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	258, 471, 834
SatI	GCNGC	6 cut(s)	317, 495, 498, 663, 666, 696
Sau3AI	GATC	2 cut(s)	213, 417
ScrFI	CCNGG	1 cut(s)	641
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	9 cut(s)	91, 136, 172, 313, 402, 481, 700, 824, 861
SfaNI	GCATC	3 cut(s)	36, 444, 666
SfcI	CTRYAG	1 cut(s)	252
SfuI	TTCGAA	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	74, 218, 528
SsiI	CCGC	3 cut(s)	342, 498, 663
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	1 cut(s)	639
TaaI	ACNGT	3 cut(s)	177, 328, 389
TaiI	ACGT	2 cut(s)	91, 313
TaqI	TCGA	2 cut(s)	358, 586
TasI	AATT	3 cut(s)	74, 218, 528
TauI	GCSGC	2 cut(s)	500, 665
TfiI	GAWTC	4 cut(s)	140, 287, 429, 649
Tru1I	TTAA	3 cut(s)	258, 471, 834
Tru9I	TTAA	3 cut(s)	258, 471, 834
TscAI	CASTG	2 cut(s)	180, 677
TseI	GCWGC	4 cut(s)	316, 494, 665, 695
TspDTI	ATGAA	5 cut(s)	9, 236, 367, 398, 489
TspRI	CASTG	2 cut(s)	180, 677
Van91I	CCANNNNNTGG	1 cut(s)	136
XceI	RCATGY	1 cut(s)	616
XmiI	GTMKAC	2 cut(s)	117, 773
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.