Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

20754167 .. 20758058

Gene Structure 3892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTTGATCCAGAGGTTCAGAGCCACCAGCAAGCTTTTGCCACACCTTTCAGCCAATAAAATCTCTCCAGTGTCTTCTTCTCTTGTGCTCCATCATCCATATCCAAAGAGGCCTTGTCTTGGAACTCTTGCACCCTATTCATCTTCCTGGCCCAAAGACCCAAAAGATAAACTTCCTTCCTTGATTCAAGACATGTCAGTTTCAACAAGTTCATCATCATCTGTTGCAAAACAAGCCATCATGCCTGAAGATGGAGTTGAGCAGATTGAATTACTCAGTGCAGTTGAGGATTTACACGGAGGAGTTGTTGTAGACTTGAAAGAAGTTATGGATTCTGAGGTTTTCAGCTCTTTGCTCAGAGCTTCAATGTCACAGTGGAAGCAAAAGGGGAAGAAGGGTGTGTGGATCAAATTGCCTATTGAACTTTCAAATCTTGTGGATGCTGCTGTTAAGGAAGGATTTAGGTACCACCATGCTGAGCCAGATTACTTAATGCTTGTAAGATGGATTCCTGAAACTATTGATACTCTTCCGGCAAATGCTTCGCACCGAGTAGGTATTGGTGCTTTTGTCATGAACAGTGAAAGAGAGATACTTGTGGTTCAGGAGATCAATGGCAGATTCAAAGATACAGGTTTCTGGAAGATGCCGACTGGGGTTGTTAATGAAGGCGAGGATATTTGTGCAGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGAATTGAAACAGAGTTTGTGGAGATTTTAGCATTTAGGCAAAGCCACAAGTCATTCTTTCGAAAATCCGACTTGTTCTTTGTTTGCATGTTAAAACCACACTCCTCTGACATCGAGAAGCAAAATTTAGAGATTGCGGCAGCCCAGTGGATGCCAGTTGAGGAATATGCAGCTCAACCCTTCATTCGGAAAAACAAGATGTTCGATTATGTAGCAGAGATATGCTTGGCAAAATCAGATAAGGACTATGCCGGTTTTTCTCCAATGCTTACAACAACATCCTCCGGAAAAGGAAGCTACTTGTACCATAACAACCGGGACATGGCCAACATACAGGCTACCGGTGATCATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

358

Amino Acids

40.0

Weight (kDa)

6.15

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	312
AccIII	TCCGGA	1 cut(s)	1001
AciI	CCGC	1 cut(s)	854
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	1041
AcsI	RAATTY	1 cut(s)	841
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	467, 1022
AfiI	CCNNNNNNNGG	4 cut(s)	119, 251, 903, 1039
AflIII	ACRYGT	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	1058
AgsI	TTSAA	9 cut(s)	188, 204, 269, 319, 366, 422, 429, 625, 725
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	6 cut(s)	34, 348, 362, 689, 890, 1014
AluI	AGCT	6 cut(s)	34, 348, 362, 689, 890, 1014
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	1001
AoxI	GGCC	3 cut(s)	110, 149, 1041
ApeKI	GCWGC	5 cut(s)	443, 686, 689, 857, 887
ApoI	RAATTY	1 cut(s)	841
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
AsiGI	ACCGGT	1 cut(s)	1058
Asp718I	GGTACC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	1034
AsuHPI	GGTGA	1 cut(s)	1073
AsuII	TTCGAA	1 cut(s)	778
BalI	TGGCCA	1 cut(s)	1043
BanI	GGYRCC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	5 cut(s)	430, 676, 698, 869, 899
BccI	CCATC	4 cut(s)	99, 245, 245, 498
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	1063
BcnI	CCSGG	1 cut(s)	1034
BcoDI	GTCTC	1 cut(s)	707
BfmI	CTRYAG	1 cut(s)	690
BisI	GCNGC	6 cut(s)	444, 687, 690, 855, 858, 888
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	6 cut(s)	445, 688, 691, 856, 859, 889
Bme1390I	CCNGG	2 cut(s)	148, 1034
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	148, 1034
BmrI	ACTGGG	2 cut(s)	663, 856
BmsI	GCATC	3 cut(s)	430, 636, 858
BmuI	ACTGGG	2 cut(s)	663, 856
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	1034
BsaWI	WCCGGW	2 cut(s)	1001, 1058
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 294, 321, 324
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 251, 903, 1039
Bse118I	RCCGGY	2 cut(s)	968, 1058
Bse1I	ACTGG	4 cut(s)	68, 658, 862, 872
BseAI	TCCGGA	1 cut(s)	1001
BseBI	CCWGG	1 cut(s)	148
BseGI	GGATG	4 cut(s)	94, 445, 873, 995
BseLI	CCNNNNNNNGG	4 cut(s)	119, 251, 903, 1039
BseMII	CTCAG	4 cut(s)	289, 327, 370, 468
BseNI	ACTGG	4 cut(s)	68, 658, 862, 872
BseRI	GAGGAG	2 cut(s)	315, 811
BseXI	GCAGC	5 cut(s)	430, 676, 698, 869, 899
BsgI	GTGCAG	2 cut(s)	300, 705
BshFI	GGCC	3 cut(s)	112, 151, 1043
BshNI	GGYRCC	1 cut(s)	465
BshTI	ACCGGT	1 cut(s)	1058
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	5 cut(s)	533, 969, 1002, 1033, 1059
BslFI	GGGAC	1 cut(s)	1049
BslI	CCNNNNNNNGG	4 cut(s)	119, 251, 903, 1039
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	1 cut(s)	1049
BsnI	GGCC	3 cut(s)	112, 151, 1043
Bsp119I	TTCGAA	1 cut(s)	778
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	1001
Bsp143I	GATC	4 cut(s)	6, 405, 609, 1063
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	1 cut(s)	854
BspANI	GGCC	3 cut(s)	112, 151, 1043
BspCNI	CTCAG	4 cut(s)	288, 328, 369, 469
BspEI	TCCGGA	1 cut(s)	1001
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	467
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	778
BspT107I	GGYRCC	1 cut(s)	465
BsrFI	RCCGGY	2 cut(s)	968, 1058
BsrI	ACTGG	4 cut(s)	68, 658, 862, 872
BssAI	RCCGGY	2 cut(s)	968, 1058
BssMI	GATC	4 cut(s)	6, 405, 609, 1063
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	375, 581
Bst6I	CTCTTC	2 cut(s)	534, 705
BstBI	TTCGAA	1 cut(s)	778
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	4 cut(s)	275, 336, 356, 477
BstF5I	GGATG	4 cut(s)	94, 445, 873, 995
BstKTI	GATC	4 cut(s)	9, 408, 612, 1066
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	4 cut(s)	6, 405, 609, 1063
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	2 cut(s)	196, 808
BstSCI	CCNGG	2 cut(s)	146, 1032
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	5 cut(s)	430, 676, 698, 869, 899
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	112, 151, 1043
BtsCI	GGATG	4 cut(s)	94, 445, 873, 995
BtsIMutI	CAGTG	5 cut(s)	75, 283, 380, 586, 869
Cac8I	GCNNGC	1 cut(s)	32
CciI	TCATGA	1 cut(s)	573
Cfr10I	RCCGGY	2 cut(s)	968, 1058
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	466, 1021
CspAI	ACCGGT	1 cut(s)	1058
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	6 cut(s)	193, 241, 473, 574, 805, 1039
CviQI	GTAC	2 cut(s)	466, 1021
DdeI	CTNAG	4 cut(s)	275, 336, 356, 477
DpnI	GATC	4 cut(s)	8, 407, 611, 1065
DpnII	GATC	4 cut(s)	6, 405, 609, 1063
EaeI	YGGCCR	1 cut(s)	1041
Eam1104I	CTCTTC	2 cut(s)	534, 705
EarI	CTCTTC	2 cut(s)	534, 705
Eco147I	AGGCCT	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	146
FaeI	CATG	6 cut(s)	196, 244, 476, 577, 808, 1042
FalI	AAGNNNNNCTT	4 cut(s)	156, 188, 758, 790
FaqI	GGGAC	1 cut(s)	1049
FatI	CATG	6 cut(s)	192, 240, 472, 573, 804, 1038
FbaI	TGATCA	1 cut(s)	1063
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	444, 687, 690, 855, 858, 888
FokI	GGATG	4 cut(s)	81, 452, 880, 982
Fsp4HI	GCNGC	6 cut(s)	444, 687, 690, 855, 858, 888
GluI	GCNGC	6 cut(s)	444, 687, 690, 855, 858, 888
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	112, 151, 1043
HapII	CCGG	5 cut(s)	533, 969, 1002, 1033, 1059
Hin1II	CATG	6 cut(s)	196, 244, 476, 577, 808, 1042
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	4 cut(s)	184, 332, 508, 621
HpaII	CCGG	5 cut(s)	533, 969, 1002, 1033, 1059
HphI	GGTGA	1 cut(s)	1073
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	7 cut(s)	20, 337, 359, 787, 826, 906, 955
Hpy188III	TCNNGA	8 cut(s)	10, 188, 512, 574, 605, 640, 832, 1002
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	5 cut(s)	186, 388, 449, 662, 907
HpyCH4III	ACNGT	2 cut(s)	375, 581
HpyCH4V	TGCA	7 cut(s)	131, 227, 281, 686, 692, 804, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	4 cut(s)	275, 336, 356, 477
Hsp92II	CATG	6 cut(s)	196, 244, 476, 577, 808, 1042
Kpn2I	TCCGGA	1 cut(s)	1001
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	4 cut(s)	6, 405, 609, 1063
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	5 cut(s)	430, 676, 698, 869, 899
LweI	GCATC	3 cut(s)	430, 636, 858
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	4 cut(s)	8, 407, 611, 1065
MboI	GATC	4 cut(s)	6, 405, 609, 1063
MboII	GAAGA	8 cut(s)	66, 69, 135, 260, 403, 521, 655, 722
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	1043
MluCI	AATT	4 cut(s)	269, 410, 720, 841
MluNI	TGGCCA	1 cut(s)	1043
MmeI	TCCRAC	1 cut(s)	810
MnlI	CCTC	9 cut(s)	6, 102, 280, 293, 331, 667, 832, 871, 1009
Mox20I	TGGCCA	1 cut(s)	1043
MroI	TCCGGA	1 cut(s)	1001
MscI	TGGCCA	1 cut(s)	1043
MseI	TTAA	4 cut(s)	450, 491, 663, 809
Msp20I	TGGCCA	1 cut(s)	1043
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	5 cut(s)	533, 969, 1002, 1033, 1059
MspR9I	CCNGG	2 cut(s)	148, 1034
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	1034
NdeII	GATC	4 cut(s)	6, 405, 609, 1063
NlaIII	CATG	6 cut(s)	196, 244, 476, 577, 808, 1042
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	369
NspI	RCATGY	2 cut(s)	196, 808
NspV	TTCGAA	1 cut(s)	778
PagI	TCATGA	1 cut(s)	573
PceI	AGGCCT	1 cut(s)	112
PciI	ACATGT	1 cut(s)	192
PfeI	GAWTC	4 cut(s)	184, 332, 508, 621
PinAI	ACCGGT	1 cut(s)	1058
PkrI	GCNGC	6 cut(s)	445, 688, 691, 856, 859, 889
PscI	ACATGT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	2 cut(s)	467, 1022
RsaNI	GTAC	2 cut(s)	466, 1021
SaqAI	TTAA	4 cut(s)	450, 491, 663, 809
SatI	GCNGC	6 cut(s)	444, 687, 690, 855, 858, 888
Sau3AI	GATC	4 cut(s)	6, 405, 609, 1063
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	148, 1034
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	3 cut(s)	430, 636, 858
SfcI	CTRYAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	778
Sse9I	AATT	4 cut(s)	269, 410, 720, 841
SseBI	AGGCCT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	854
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	146, 1032
TaaI	ACNGT	2 cut(s)	375, 581
TaqI	TCGA	3 cut(s)	778, 831, 921
TasI	AATT	4 cut(s)	269, 410, 720, 841
TauI	GCSGC	1 cut(s)	857
TfiI	GAWTC	4 cut(s)	184, 332, 508, 621
Tru1I	TTAA	4 cut(s)	450, 491, 663, 809
Tru9I	TTAA	4 cut(s)	450, 491, 663, 809
TscAI	CASTG	5 cut(s)	75, 283, 380, 586, 869
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	5 cut(s)	443, 686, 689, 857, 887
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	5 cut(s)	129, 201, 590, 681, 889
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	5 cut(s)	75, 283, 380, 586, 869
XapI	RAATTY	1 cut(s)	841
XceI	RCATGY	2 cut(s)	196, 808
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.