Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

73745890 .. 73749575

Gene Structure 3686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG527600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCAGAGGTTCAGAGCCACCACCAAGTTTTTGCCGCACCTTTCAGGGAAGAAAATTTCTCCGCATTATTCTTCTGGTGTATTGCTTGCAAAAAGGCCTGGACTTGGAATTACAGTTTCATCCTCCTCCTGGCTTCAGTTTCCCAAAGTTTCAACAAGTTCATGTGCTGTTGCAAAGCAATGCTTGATGGCCGAAAGTGGAGTTGAGCAGATTGAATTGCTCAATGCACATGATGATATACATGGGGGAGTTGTTGTAGACATGAAAGACCAGCCCATGGATTCTGAGGTCTTTGGTTCTTTGCTCAAAGCTTCACTATCAGAATGGAGGCAAAAGGAAAAGAAGGGTGTTTGGATCAAATTGCCGATTGAACTCTCAAATCTTGTTCATGCTGCAGTTCAGGAAGGATTTACTTATCACCATGCTGAATCAGATTACCTAATGCTTAAACGTTGGCTGCCTGAAACTGTTGATACTCTTCCTGCGAATGCCTCTCATCGAGTGGGCATTGGTGCTTTCATCATGAACAATAAGAGAGAGGTGCTTGTGGTTCAGGAGATCAATGGCAGATTCAAAGATACAGGTGTCTGGAAGATGCCTACTGGGGCTGTTAATGAAGGAGAGGATATTTGTGCAGCAGCAGTTAGGGAAGTCAAAGAAGAGACAGGAATTGAGGCAGAGTTTGTGGAAATATTAGCGTTCAGGCAAAGCCACAAGTCATTCTTTCGAAAATCAGATTTATTTTTCGTTTGCATGTTAAAACCGCAAACCTTTGACATACAGGAGCAGAATCAAGAGATTGCAGCAGCCCAGTGGATGCCATTTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAACTCTTTGATTATGTAGCAGAAATATGTTTGGCAAAAACAGATGAGCATTATACTGGTTTTACTCCTCTAGCAACGACTACATCCTCCGGAAAAGCAAGCTACTTGTATTTCAACCACCGGGATATGGGTGGCCTACTCACTTCCGATAAACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

340

Amino Acids

38.16

Weight (kDa)

6.27

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	74 - 153	3.6e-31	Nudix hydrolase domain
NUDIX	PF00293	166 - 286	5.4e-25	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	950
AciI	CCGC	3 cut(s)	35, 62, 764
AclI	AACGTT	1 cut(s)	451
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	104, 129, 277, 988
AgsI	TTSAA	5 cut(s)	153, 215, 371, 574, 976
AjnI	CCWGG	2 cut(s)	97, 128
AluBI	AGCT	3 cut(s)	311, 839, 963
AluI	AGCT	3 cut(s)	311, 839, 963
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	362
Aor13HI	TCCGGA	1 cut(s)	950
AoxI	GGCC	3 cut(s)	95, 189, 994
ApeKI	GCWGC	7 cut(s)	392, 457, 635, 638, 803, 806, 836
ApoI	RAATTY	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	983
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	1 cut(s)	727
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BbvI	GCAGC	7 cut(s)	379, 444, 647, 650, 815, 818, 848
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	99, 130
BcnI	CCSGG	1 cut(s)	983
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	1 cut(s)	932
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	8 cut(s)	35, 393, 458, 636, 639, 804, 807, 837
BlsI	GCNGC	8 cut(s)	36, 394, 459, 637, 640, 805, 808, 838
Bme1390I	CCNGG	3 cut(s)	99, 130, 983
BmrFI	CCNGG	3 cut(s)	99, 130, 983
BmrI	ACTGGG	2 cut(s)	612, 805
BmsI	GCATC	2 cut(s)	585, 807
BmuI	ACTGGG	2 cut(s)	612, 805
Bpu14I	TTCGAA	1 cut(s)	727
BpuMI	CCSGG	1 cut(s)	983
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	950
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 129, 277, 988
Bse1I	ACTGG	3 cut(s)	607, 811, 922
Bse3DI	GCAATG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	950
BseBI	CCWGG	2 cut(s)	99, 130
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	3 cut(s)	119, 822, 944
BseLI	CCNNNNNNNGG	4 cut(s)	104, 129, 277, 988
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	3 cut(s)	607, 811, 922
BseRI	GAGGAG	2 cut(s)	115, 918
BseXI	GCAGC	7 cut(s)	379, 444, 647, 650, 815, 818, 848
BsgI	GTGCAG	1 cut(s)	654
BshFI	GGCC	3 cut(s)	97, 191, 996
BsiSI	CCGG	2 cut(s)	951, 982
BslI	CCNNNNNNNGG	4 cut(s)	104, 129, 277, 988
BsmAI	GTCTC	1 cut(s)	656
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	97, 191, 996
Bsp119I	TTCGAA	1 cut(s)	727
Bsp13I	TCCGGA	1 cut(s)	950
Bsp143I	GATC	2 cut(s)	354, 558
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	3 cut(s)	35, 62, 764
BspANI	GGCC	3 cut(s)	97, 191, 996
BspCNI	CTCAG	1 cut(s)	277
BspEI	TCCGGA	1 cut(s)	950
BspHI	TCATGA	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	607, 811, 922
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	354, 558
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	99, 130
Bst4CI	ACNGT	3 cut(s)	115, 469, 1020
Bst6I	CTCTTC	2 cut(s)	483, 654
BstBI	TTCGAA	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	87, 961
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	3 cut(s)	119, 822, 944
BstKTI	GATC	2 cut(s)	357, 561
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	2 cut(s)	354, 558
BstNI	CCWGG	2 cut(s)	99, 130
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	3 cut(s)	97, 128, 981
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	7 cut(s)	379, 444, 647, 650, 815, 818, 848
BsuRI	GGCC	3 cut(s)	97, 191, 996
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	119, 822, 944
BtsIMutI	CAGTG	1 cut(s)	818
Cac8I	GCNNGC	2 cut(s)	87, 961
CciI	TCATGA	1 cut(s)	522
CviAII	CATG	9 cut(s)	162, 230, 242, 262, 277, 389, 422, 523, 754
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	356, 560
DpnII	GATC	2 cut(s)	354, 558
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	483, 654
EarI	CTCTTC	2 cut(s)	483, 654
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	97, 128
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	9 cut(s)	165, 233, 245, 265, 280, 392, 425, 526, 757
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 707, 739
FatI	CATG	9 cut(s)	161, 229, 241, 261, 276, 388, 421, 522, 753
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	8 cut(s)	35, 393, 458, 636, 639, 804, 807, 837
FokI	GGATG	3 cut(s)	106, 829, 931
Fsp4HI	GCNGC	8 cut(s)	35, 393, 458, 636, 639, 804, 807, 837
FspBI	CTAG	1 cut(s)	932
GluI	GCNGC	8 cut(s)	35, 393, 458, 636, 639, 804, 807, 837
HaeIII	GGCC	3 cut(s)	97, 191, 996
HapII	CCGG	2 cut(s)	951, 982
Hin1II	CATG	9 cut(s)	165, 233, 245, 265, 280, 392, 425, 526, 757
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	4 cut(s)	281, 428, 570, 790
HpaII	CCGG	2 cut(s)	951, 982
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	6 cut(s)	14, 286, 322, 433, 736, 1009
Hpy188III	TCNNGA	6 cut(s)	401, 523, 554, 589, 794, 951
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	337, 398, 611
HpyCH4III	ACNGT	3 cut(s)	115, 469, 1020
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	9 cut(s)	4, 89, 173, 227, 395, 635, 753, 803, 836
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	9 cut(s)	165, 233, 245, 265, 280, 392, 425, 526, 757
Kpn2I	TCCGGA	1 cut(s)	950
Kzo9I	GATC	2 cut(s)	354, 558
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	7 cut(s)	379, 444, 647, 650, 815, 818, 848
LweI	GCATC	2 cut(s)	585, 807
MaeI	CTAG	1 cut(s)	932
MaeII	ACGT	1 cut(s)	451
MalI	GATC	2 cut(s)	356, 560
MboI	GATC	2 cut(s)	354, 558
MboII	GAAGA	5 cut(s)	61, 63, 470, 604, 671
MluCI	AATT	5 cut(s)	54, 108, 215, 359, 669
MroI	TCCGGA	1 cut(s)	950
MseI	TTAA	3 cut(s)	447, 612, 758
MspI	CCGG	2 cut(s)	951, 982
MspR9I	CCNGG	3 cut(s)	99, 130, 983
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	99, 130
NciI	CCSGG	1 cut(s)	983
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	354, 558
NlaIII	CATG	9 cut(s)	165, 233, 245, 265, 280, 392, 425, 526, 757
NspI	RCATGY	1 cut(s)	757
NspV	TTCGAA	1 cut(s)	727
PagI	TCATGA	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	97
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	281, 428, 570, 790
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	8 cut(s)	36, 394, 459, 637, 640, 805, 808, 838
Psp1406I	AACGTT	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	97, 128
PspGI	CCWGG	2 cut(s)	97, 128
PstI	CTGCAG	1 cut(s)	397
SaqAI	TTAA	3 cut(s)	447, 612, 758
SatI	GCNGC	8 cut(s)	35, 393, 458, 636, 639, 804, 807, 837
Sau3AI	GATC	2 cut(s)	354, 558
ScrFI	CCNGG	3 cut(s)	99, 130, 983
SfaNI	GCATC	2 cut(s)	585, 807
SfcI	CTRYAG	1 cut(s)	393
SfuI	TTCGAA	1 cut(s)	727
Sse9I	AATT	5 cut(s)	54, 108, 215, 359, 669
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	3 cut(s)	35, 62, 764
SspI	AATATT	1 cut(s)	693
SspMI	CTAG	1 cut(s)	932
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	3 cut(s)	97, 128, 981
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	115, 469, 1020
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	499, 727
TasI	AATT	5 cut(s)	54, 108, 215, 359, 669
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	4 cut(s)	281, 428, 570, 790
Tru1I	TTAA	3 cut(s)	447, 612, 758
Tru9I	TTAA	3 cut(s)	447, 612, 758
TscAI	CASTG	1 cut(s)	818
TseI	GCWGC	7 cut(s)	392, 457, 635, 638, 803, 806, 836
TspDTI	ATGAA	7 cut(s)	108, 150, 278, 377, 508, 539, 630
TspRI	CASTG	1 cut(s)	818
Van91I	CCANNNNNTGG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.