Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

30301989 .. 30332550

Gene Structure 30562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG245500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCTGCAATTAAGTATCCTTTTGCTACTTGTGCAGGAAGGATTTCGGTACCACCATGCCGAACCAGATTACCTAATGCTCGTGCATTGGATTCCTGAAACGGTTGATACTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCCTTTGTCATGAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGGTCAGTGGCTTTTTTAGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTGAATGAAGGTGAGGATATTTTTGCAGCTGCTGTTAGAGAAGTCAAAGAAGAGACTGGAATTGAGACAGAATTTGTGGAAATTTTAGCATTTAGTCAAAGCCATGAGGAATTCTTTCGAAAATCAGATTTGTTTTTCGTTTGCATGTTAGAACCACATTCCTTTGACATCCAGAAGCAGAACCTAGAGATTGCAGCAGCCCAGTGGATGCCGATTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAGCCGTTTAATGATGTAGCACAAATATGTTTGGCAAAATCAGATAAGGACTATACCGGTGCGAGAGATACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGGTGATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCAGCGATGCTTTAAAGAAGTTGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGGGCTCAAAGGAAAAAGACCGCTAGTCCTACCTAGCATGGAGGCAAGTGACATCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCAGTTAGTGGAGAGATAGGAAAGCCGTGTCCTGGTGGAACGGAAGCTGCGTGTGGTTCCTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

306

Amino Acids

34.46

Weight (kDa)

5.22

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	9 - 31	1.2e-06	Nudix hydrolase domain
NUDIX	PF00293	44 - 168	1.4e-23	NUDIX domain
PEPcase	PF00311	190 - 236	9.2e-11	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	3 cut(s)	48, 146, 594
AciI	CCGC	1 cut(s)	782
AcsI	RAATTY	4 cut(s)	314, 324, 353, 749
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	2 cut(s)	50, 669
AfiI	CCNNNNNNNGG	3 cut(s)	611, 823, 884
AgeI	ACCGGT	1 cut(s)	551
AgsI	TTSAA	1 cut(s)	637
AhdI	GACNNNNNGTC	1 cut(s)	785
AjnI	CCWGG	2 cut(s)	610, 883
AluBI	AGCT	7 cut(s)	272, 473, 589, 623, 665, 829, 899
AluI	AGCT	7 cut(s)	272, 473, 589, 623, 665, 829, 899
Alw26I	GTCTC	2 cut(s)	290, 302
AlwNI	CAGNNNCTG	1 cut(s)	275
ApeKI	GCWGC	7 cut(s)	4, 269, 272, 437, 440, 470, 899
ApoI	RAATTY	4 cut(s)	314, 324, 353, 749
AsiGI	ACCGGT	1 cut(s)	551
Asp700I	GAANNNNTTC	2 cut(s)	42, 357
Asp718I	GGTACC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	266, 626
AsuII	TTCGAA	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	716
BaeI	ACNNNNGTAYC	4 cut(s)	204, 237, 555, 588
BanI	GGYRCC	3 cut(s)	48, 146, 594
BanII	GRGCYC	1 cut(s)	768
BauI	CACGAG	1 cut(s)	80
BbvI	GCAGC	6 cut(s)	259, 281, 449, 452, 482, 886
BceAI	ACGGC	2 cut(s)	484, 862
BciT130I	CCWGG	2 cut(s)	612, 885
BciVI	GTATCC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	290, 302
BfaI	CTAG	4 cut(s)	428, 624, 785, 795
BfuAI	ACCTGC	1 cut(s)	620
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	7 cut(s)	5, 270, 273, 438, 441, 471, 900
BlsI	GCNGC	7 cut(s)	6, 271, 274, 439, 442, 472, 901
Bme1390I	CCNGG	3 cut(s)	134, 612, 885
BmeRI	GACNNNNNGTC	1 cut(s)	785
BmiI	GGNNCC	4 cut(s)	50, 148, 596, 910
BmrFI	CCNGG	3 cut(s)	134, 612, 885
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	3 cut(s)	441, 685, 832
BmuI	ACTGGG	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	590
Bpu14I	TTCGAA	1 cut(s)	361
BpuMI	CCSGG	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	3 cut(s)	611, 823, 884
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	4 cut(s)	241, 304, 445, 750
BseBI	CCWGG	2 cut(s)	612, 885
BseGI	GGATG	4 cut(s)	411, 456, 736, 813
BseLI	CCNNNNNNNGG	3 cut(s)	611, 823, 884
BseNI	ACTGG	4 cut(s)	241, 304, 445, 750
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	6 cut(s)	259, 281, 449, 452, 482, 886
BsgI	GTGCAG	1 cut(s)	53
BshNI	GGYRCC	3 cut(s)	48, 146, 594
BshTI	ACCGGT	1 cut(s)	551
BsiSI	CCGG	2 cut(s)	133, 552
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	3 cut(s)	611, 823, 884
BsmAI	GTCTC	2 cut(s)	290, 302
BsmFI	GGGAC	1 cut(s)	637
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	716, 768
BspACI	CCGC	1 cut(s)	782
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	4 cut(s)	50, 148, 596, 910
BspMI	ACCTGC	1 cut(s)	620
BspT104I	TTCGAA	1 cut(s)	361
BspT107I	GGYRCC	3 cut(s)	48, 146, 594
BsrFI	RCCGGY	1 cut(s)	551
BsrI	ACTGG	4 cut(s)	241, 304, 445, 750
BssAI	RCCGGY	1 cut(s)	551
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	612, 885
Bst4CI	ACNGT	3 cut(s)	103, 164, 722
Bst6I	CTCTTC	2 cut(s)	117, 288
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	590
BstF5I	GGATG	4 cut(s)	411, 456, 736, 813
BstMAI	GTCTC	2 cut(s)	290, 302
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 851
BstNI	CCWGG	2 cut(s)	612, 885
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	132, 610, 883
BstSLI	GKGCMC	1 cut(s)	716
BstV1I	GCAGC	6 cut(s)	259, 281, 449, 452, 482, 886
BsuI	GTATCC	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	4 cut(s)	411, 456, 736, 813
BtsIMutI	CAGTG	3 cut(s)	202, 452, 727
BveI	ACCTGC	1 cut(s)	620
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	551
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	2 cut(s)	49, 668
CspAI	ACCGGT	1 cut(s)	551
CviAII	CATG	5 cut(s)	56, 157, 347, 388, 799
CviQI	GTAC	2 cut(s)	49, 668
DdeI	CTNAG	1 cut(s)	590
DraI	TTTAAA	1 cut(s)	702
DraIII	CACNNNGTG	1 cut(s)	614
DriI	GACNNNNNGTC	1 cut(s)	785
Eam1104I	CTCTTC	2 cut(s)	117, 288
Eam1105I	GACNNNNNGTC	1 cut(s)	785
EarI	CTCTTC	2 cut(s)	117, 288
Eco24I	GRGCYC	1 cut(s)	768
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	610, 883
EcoT38I	GRGCYC	1 cut(s)	768
FaeI	CATG	5 cut(s)	59, 160, 350, 391, 802
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	5 cut(s)	55, 156, 346, 387, 798
Fnu4HI	GCNGC	7 cut(s)	5, 270, 273, 438, 441, 471, 900
FokI	GGATG	4 cut(s)	398, 463, 743, 800
FriOI	GRGCYC	1 cut(s)	768
Fsp4HI	GCNGC	7 cut(s)	5, 270, 273, 438, 441, 471, 900
FspBI	CTAG	4 cut(s)	428, 624, 785, 795
GluI	GCNGC	7 cut(s)	5, 270, 273, 438, 441, 471, 900
GsuI	CTGGAG	1 cut(s)	258
HapII	CCGG	2 cut(s)	133, 552
Hin1II	CATG	5 cut(s)	59, 160, 350, 391, 802
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	133, 552
HphI	GGTGA	2 cut(s)	266, 626
Hpy188I	TCNGA	2 cut(s)	370, 538
Hpy188III	TCNNGA	4 cut(s)	95, 157, 188, 415
Hpy99I	CGWCG	1 cut(s)	687
HpyAV	CCTTC	2 cut(s)	32, 245
HpyCH4III	ACNGT	3 cut(s)	103, 164, 722
HpyCH4IV	ACGT	1 cut(s)	682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 851
HpyF3I	CTNAG	1 cut(s)	590
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	5 cut(s)	59, 160, 350, 391, 802
KpnI	GGTACC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	646, 826
Lsp1109I	GCAGC	6 cut(s)	259, 281, 449, 452, 482, 886
LweI	GCATC	3 cut(s)	441, 685, 832
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	4 cut(s)	428, 624, 785, 795
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	1 cut(s)	809
MboII	GAAGA	3 cut(s)	104, 305, 746
MhlI	GDGCHC	2 cut(s)	716, 768
MluCI	AATT	6 cut(s)	8, 303, 314, 324, 353, 749
MnlI	CCTC	9 cut(s)	126, 166, 184, 250, 343, 454, 681, 755, 796
MroXI	GAANNNNTTC	2 cut(s)	42, 357
MseI	TTAA	3 cut(s)	11, 504, 701
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	2 cut(s)	133, 552
MspR9I	CCNGG	3 cut(s)	134, 612, 885
MvaI	CCWGG	2 cut(s)	612, 885
MwoI	GCNNNNNNNGC	2 cut(s)	31, 851
NciI	CCSGG	1 cut(s)	134
NlaIII	CATG	5 cut(s)	59, 160, 350, 391, 802
NlaIV	GGNNCC	4 cut(s)	50, 148, 596, 910
NmuCI	GTSAC	1 cut(s)	809
NspI	RCATGY	1 cut(s)	391
NspV	TTCGAA	1 cut(s)	361
PagI	TCATGA	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	899
PdmI	GAANNNNTTC	2 cut(s)	42, 357
PfeI	GAWTC	1 cut(s)	91
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	7 cut(s)	6, 271, 274, 439, 442, 472, 901
Psp6I	CCWGG	2 cut(s)	610, 883
PspGI	CCWGG	2 cut(s)	610, 883
PspN4I	GGNNCC	4 cut(s)	50, 148, 596, 910
PstNI	CAGNNNCTG	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	50, 669
RsaNI	GTAC	2 cut(s)	49, 668
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	11, 504, 701
SatI	GCNGC	7 cut(s)	5, 270, 273, 438, 441, 471, 900
ScrFI	CCNGG	3 cut(s)	134, 612, 885
SduI	GDGCHC	2 cut(s)	716, 768
SexAI	ACCWGGT	1 cut(s)	610
SfaNI	GCATC	3 cut(s)	441, 685, 832
SfuI	TTCGAA	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	520
Sse9I	AATT	6 cut(s)	8, 303, 314, 324, 353, 749
SsiI	CCGC	1 cut(s)	782
SspMI	CTAG	4 cut(s)	428, 624, 785, 795
StyD4I	CCNGG	3 cut(s)	132, 610, 883
TaaI	ACNGT	3 cut(s)	103, 164, 722
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	1 cut(s)	361
TasI	AATT	6 cut(s)	8, 303, 314, 324, 353, 749
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	11, 504, 701
Tru9I	TTAA	3 cut(s)	11, 504, 701
TscAI	CASTG	3 cut(s)	202, 452, 727
TseFI	GTSAC	1 cut(s)	809
TseI	GCWGC	7 cut(s)	4, 269, 272, 437, 440, 470, 899
Tsp45I	GTSAC	1 cut(s)	809
TspDTI	ATGAA	4 cut(s)	173, 264, 633, 747
TspGWI	ACGGA	1 cut(s)	908
TspRI	CASTG	3 cut(s)	202, 452, 727
XapI	RAATTY	4 cut(s)	314, 324, 353, 749
XceI	RCATGY	1 cut(s)	391
XmnI	GAANNNNTTC	2 cut(s)	42, 357
XspI	CTAG	4 cut(s)	428, 624, 785, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.