Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

76647221 .. 76673304

Gene Structure 26084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG536800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAGCACTGATTCTCTTGCGACGACGACAAGGCCCGTGACCTCTTCATCTCCAAACGGAAAGTCACTCCAGCTCTTCGACATGGCCTACAGGTCAGACAACGACTACCACTTCAAGGTCATCTTGATCGGCCATGCTGATCTAGACGGAACCGCACTCGTACCTTTCGGCCTTAGATGTGGGAGTCGATATTATGCTACCATTAAAAGGTTCAGAGCCACCACCAAGTTTTTGCCGCACCTTTCAGGGAAGAAAATTTCTCCGCATTATTCTTCTGGTGTATTGCTTGCAAAAAGGCCTGGACTTGGAATTACAGTTTCATCCTCCTCCTGGCTTCAGTTTCCCAAAGACCCAAAAGATAAAAATCCATTATTGAATCAAGTCATGTCAGTTTCAACAAGTTCATGTGCTGTTGCAAAGCAATGCTTGATGGCCGAAAGTGGAGTTGAGCAGATTGAATTGCTCAATGCACATGATGATATACATGGGGGAGTTGTTGTAGACATGAAAGACCAGCCCATGGATTCTGAGGTCTTTGGTTCTTTGCTCAAAGCTTCACTATCAGAATGGAGGCAAAAGGAAAAGAAGGGTGTTTGGATCAAATTGCCGATTGAACTCTCAAATCTTGTTCATGCTGCAGTTCAGGAAGGATTTACTTATCACCATGCTGAATCAGATTACCTAATGCTTAAACGTTGGCTGCCTGAAACTGTTGATACTCTTCCTGCGAATGCCTCTCATCGAGTGGGCATTGGTGCTTTCATCATGAACAATAAGAGAGAGGTGCTTGTGGTTCAGGAGATCAATGGCAGATTCAAAGATACAGGTGTCTGGAAGATGCCTACTGGGGCTGTTAATGAAGGAGAGGATATTTGTGCAGCAGCAGTTAGGGAAGTCAAAGAAGAGACAGGAATTGAGGCAGAGTTTGTGGAAATATTAGCGTTCAGGCAAAGCCACAAGTCATTCTTTCGAAAATCAGATTTATTTTTCGTTTGCATGTTAAAACCGCAAACCTTTGACATACAGGAGCAGAATCAAGAGATTGCAGCAGCCCAGTGGATGCCATTTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAACTCTTTGATTATGTAGCAGAAATATGTTTGGCAAAAACAGATGAGCATTATACTGGTTTTACTCCTCTAGCAACGACTACATCCTCCGGAAAAGCAAGCTACTTGTATTTCAACCACCGGGATATGGGTGGCCTACTCACTTCCGATAAACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

421

Amino Acids

47.04

Weight (kDa)

6.51

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	155 - 234	5.1e-31	Nudix hydrolase domain
NUDIX	PF00293	247 - 367	8.3e-25	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	501
AccIII	TCCGGA	1 cut(s)	1193
AciI	CCGC	4 cut(s)	153, 236, 263, 1007
AclI	AACGTT	1 cut(s)	694
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	2 cut(s)	130, 432
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	6 cut(s)	115, 207, 305, 330, 520, 1231
AgsI	TTSAA	7 cut(s)	115, 376, 396, 458, 614, 817, 1219
AjnI	CCWGG	2 cut(s)	298, 329
AluBI	AGCT	4 cut(s)	73, 554, 1082, 1206
AluI	AGCT	4 cut(s)	73, 554, 1082, 1206
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	899
AlwI	GGATC	1 cut(s)	605
Aor13HI	TCCGGA	1 cut(s)	1193
AoxI	GGCC	7 cut(s)	32, 84, 130, 169, 296, 432, 1237
ApeKI	GCWGC	7 cut(s)	635, 700, 878, 881, 1046, 1049, 1079
ApoI	RAATTY	1 cut(s)	255
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	1226
AsuHPI	GGTGA	1 cut(s)	653
AsuII	TTCGAA	1 cut(s)	970
BaeI	ACNNNNGTAYC	2 cut(s)	813, 846
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	7 cut(s)	622, 687, 890, 893, 1058, 1061, 1091
BccI	CCATC	1 cut(s)	424
BciT130I	CCWGG	2 cut(s)	300, 331
BcnI	CCSGG	1 cut(s)	1226
BcoDI	GTCTC	1 cut(s)	899
BfaI	CTAG	2 cut(s)	143, 1175
BfmI	CTRYAG	2 cut(s)	88, 636
BisI	GCNGC	8 cut(s)	236, 636, 701, 879, 882, 1047, 1050, 1080
BlsI	GCNGC	8 cut(s)	237, 637, 702, 880, 883, 1048, 1051, 1081
Bme1390I	CCNGG	3 cut(s)	300, 331, 1226
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	3 cut(s)	300, 331, 1226
BmrI	ACTGGG	2 cut(s)	855, 1048
BmsI	GCATC	2 cut(s)	828, 1050
BmuI	ACTGGG	2 cut(s)	855, 1048
BpmI	CTGGAG	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	970
BpuMI	CCSGG	1 cut(s)	1226
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	1193
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 207, 305, 330, 520, 1231
Bse1I	ACTGG	3 cut(s)	850, 1054, 1165
Bse3DI	GCAATG	1 cut(s)	428
Bse8I	GATNNNNATC	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	1193
BseBI	CCWGG	2 cut(s)	300, 331
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	3 cut(s)	320, 1065, 1187
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	6 cut(s)	115, 207, 305, 330, 520, 1231
BseMI	GCAATG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	3 cut(s)	850, 1054, 1165
BseRI	GAGGAG	2 cut(s)	316, 1161
BseXI	GCAGC	7 cut(s)	622, 687, 890, 893, 1058, 1061, 1091
BsgI	GTGCAG	1 cut(s)	897
BshFI	GGCC	7 cut(s)	34, 86, 132, 171, 298, 434, 1239
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	1194, 1225
BslI	CCNNNNNNNGG	6 cut(s)	115, 207, 305, 330, 520, 1231
BsmAI	GTCTC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	7 cut(s)	34, 86, 132, 171, 298, 434, 1239
Bsp119I	TTCGAA	1 cut(s)	970
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	1193
Bsp143I	GATC	4 cut(s)	126, 139, 597, 801
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	4 cut(s)	153, 236, 263, 1007
BspANI	GGCC	7 cut(s)	34, 86, 132, 171, 298, 434, 1239
BspCNI	CTCAG	1 cut(s)	520
BspEI	TCCGGA	1 cut(s)	1193
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	605
BspQI	GCTCTTC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	970
BsrDI	GCAATG	1 cut(s)	428
BsrI	ACTGG	3 cut(s)	850, 1054, 1165
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	4 cut(s)	126, 139, 597, 801
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	300, 331
Bst4CI	ACNGT	3 cut(s)	316, 712, 1263
Bst6I	CTCTTC	4 cut(s)	49, 80, 726, 897
BstBI	TTCGAA	1 cut(s)	970
BstC8I	GCNNGC	2 cut(s)	288, 1204
BstDEI	CTNAG	2 cut(s)	173, 528
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	3 cut(s)	320, 1065, 1187
BstKTI	GATC	4 cut(s)	129, 142, 600, 804
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	4 cut(s)	126, 139, 597, 801
BstNI	CCWGG	2 cut(s)	300, 331
BstNSI	RCATGY	1 cut(s)	1000
BstSCI	CCNGG	3 cut(s)	298, 329, 1224
BstSFI	CTRYAG	2 cut(s)	88, 636
BstV1I	GCAGC	7 cut(s)	622, 687, 890, 893, 1058, 1061, 1091
BsuRI	GGCC	7 cut(s)	34, 86, 132, 171, 298, 434, 1239
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	320, 1065, 1187
BtsIMutI	CAGTG	2 cut(s)	6, 1061
Cac8I	GCNNGC	2 cut(s)	288, 1204
CciI	TCATGA	1 cut(s)	765
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	161
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	173, 528
DpnI	GATC	4 cut(s)	128, 141, 599, 803
DpnII	GATC	4 cut(s)	126, 139, 597, 801
EaeI	YGGCCR	2 cut(s)	130, 432
Eam1104I	CTCTTC	4 cut(s)	49, 80, 726, 897
EarI	CTCTTC	4 cut(s)	49, 80, 726, 897
Eco130I	CCWWGG	1 cut(s)	519
Eco147I	AGGCCT	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	298, 329
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
FalI	AAGNNNNNCTT	6 cut(s)	107, 139, 410, 442, 950, 982
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	8 cut(s)	236, 636, 701, 879, 882, 1047, 1050, 1080
FokI	GGATG	3 cut(s)	307, 1072, 1174
Fsp4HI	GCNGC	8 cut(s)	236, 636, 701, 879, 882, 1047, 1050, 1080
FspBI	CTAG	2 cut(s)	143, 1175
GluI	GCNGC	8 cut(s)	236, 636, 701, 879, 882, 1047, 1050, 1080
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	7 cut(s)	34, 86, 132, 171, 298, 434, 1239
HapII	CCGG	2 cut(s)	1194, 1225
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	7 cut(s)	11, 184, 376, 524, 671, 813, 1033
HpaII	CCGG	2 cut(s)	1194, 1225
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	7 cut(s)	97, 215, 529, 565, 676, 979, 1252
Hpy188III	TCNNGA	8 cut(s)	124, 143, 644, 766, 797, 832, 1037, 1194
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	3 cut(s)	580, 641, 854
HpyCH4III	ACNGT	3 cut(s)	316, 712, 1263
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	8 cut(s)	290, 416, 470, 638, 878, 996, 1046, 1079
HpyF3I	CTNAG	2 cut(s)	173, 528
HpySE526I	ACGT	1 cut(s)	694
Kpn2I	TCCGGA	1 cut(s)	1193
Kzo9I	GATC	4 cut(s)	126, 139, 597, 801
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	1027
Lsp1109I	GCAGC	7 cut(s)	622, 687, 890, 893, 1058, 1061, 1091
LweI	GCATC	2 cut(s)	828, 1050
MaeI	CTAG	2 cut(s)	143, 1175
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	2 cut(s)	37, 63
MalI	GATC	4 cut(s)	128, 141, 599, 803
MboI	GATC	4 cut(s)	126, 139, 597, 801
MboII	GAAGA	7 cut(s)	36, 67, 262, 264, 713, 847, 914
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	255, 309, 458, 602, 912
MlyI	GAGTC	1 cut(s)	193
MroI	TCCGGA	1 cut(s)	1193
MseI	TTAA	4 cut(s)	204, 690, 855, 1001
MspI	CCGG	2 cut(s)	1194, 1225
MspR9I	CCNGG	3 cut(s)	300, 331, 1226
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	2 cut(s)	300, 331
NciI	CCSGG	1 cut(s)	1226
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	4 cut(s)	126, 139, 597, 801
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	37, 63
NspI	RCATGY	1 cut(s)	1000
NspV	TTCGAA	1 cut(s)	970
PagI	TCATGA	1 cut(s)	765
PceI	AGGCCT	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	736
PfeI	GAWTC	6 cut(s)	11, 376, 524, 671, 813, 1033
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	8 cut(s)	237, 637, 702, 880, 883, 1048, 1051, 1081
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	694
Psp6I	CCWGG	2 cut(s)	298, 329
PspGI	CCWGG	2 cut(s)	298, 329
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	640
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	204, 690, 855, 1001
SatI	GCNGC	8 cut(s)	236, 636, 701, 879, 882, 1047, 1050, 1080
Sau3AI	GATC	4 cut(s)	126, 139, 597, 801
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	300, 331, 1226
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	828, 1050
SfcI	CTRYAG	2 cut(s)	88, 636
SfuI	TTCGAA	1 cut(s)	970
Sse9I	AATT	5 cut(s)	255, 309, 458, 602, 912
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	4 cut(s)	153, 236, 263, 1007
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	2 cut(s)	143, 1175
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	3 cut(s)	298, 329, 1224
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	3 cut(s)	316, 712, 1263
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	4 cut(s)	78, 187, 742, 970
TasI	AATT	5 cut(s)	255, 309, 458, 602, 912
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	6 cut(s)	11, 376, 524, 671, 813, 1033
Tru1I	TTAA	4 cut(s)	204, 690, 855, 1001
Tru9I	TTAA	4 cut(s)	204, 690, 855, 1001
TscAI	CASTG	2 cut(s)	13, 1061
TseFI	GTSAC	2 cut(s)	37, 63
TseI	GCWGC	7 cut(s)	635, 700, 878, 881, 1046, 1049, 1079
Tsp45I	GTSAC	2 cut(s)	37, 63
TspDTI	ATGAA	8 cut(s)	36, 309, 393, 521, 620, 751, 782, 873
TspGWI	ACGGA	2 cut(s)	72, 162
TspRI	CASTG	2 cut(s)	13, 1061
Van91I	CCANNNNNTGG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	255
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	1000
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	2 cut(s)	143, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.