Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

68873027 .. 68883120

Gene Structure 10094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTCGTTCTTTCTCCAACGCTAAGCTTGTCTCCGCTCTCGTCTCCTACACAATCGCCAGGTCAGTGGATTGGAACCATCTTAATGAGGAGATGAACAGAAGGATGCGAGAGAGCCGGAAGAAGAAGAGGGACGAATTTGGAGGAAATTGGGAGTTCATGGATTTTTTAGGTGAAATTCAAAGACCTGGATACGCGGCGGGGTCACCAGGACTTGCGGCGGTTAGAGGAGAGGCTACTTCTGTGTCTAGAAGCATAAACTTGCGCAAGAAATCAGAAGATAGAAATCCTTTCAATCAAGTCATGTCAGTTTCAATAAGTTCATCTTTTGTCGAGAAACAAGTGATTGGGCCTGAAGATGGAGTCGAGCAGATTCAGGTACTTCCTGCAGTTGAGGATAAGTATGGTGGAGTTGTTGTGGAATTGAAAGGTGATCAGCCCTTGGATTCCGAGGTTTATACTTCTAGGCTCAGATTTTCAATGTCACAATGGAAACAAAAGGGGAAGAGGGGCGTTTGGATCAAATTGCCTAAGCAACTCTCGAACCTTGTTGATGCGACAGTTAAGGAAGGATTTAGGTACCACCATGCCGAACCAGATTACCTAATGCTGGTGCATTGGATACCTGAAACAGTTGACACTCTTCCCCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCGTAAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGGCCAATGGCTCTTTCCGAGGTACAGGTGTATGGAAGTTGCCAACTGGAGTTGTTCATGAAGGTGAGGATATTTTTGCAGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTTGTGGAAATGTTAGCATTTAGGCACAGCCACAAGGCATTCTTTAGAAAATCGGATTTGTTTTTCATTTGCATGTTAAAACCACATTCCCTTGATATCCAGAAGCAGGACTCAGAGATTGCGGCAACACAGTGGATGCCGATTGAGGACTATGCAGCTCAACCTTTCGTCAAAGAACACAAACTGTTTGATGATATAGCACAAATATGTTTAGCGAAATTGGATAATGACTATACTGGTTTTACTTCTCTGGCAACAACTACTTCCACTGGGAAAACCAGCTACTTGTACTTCAACAACGGCAAACCTACGAACTTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

389

Amino Acids

43.93

Weight (kDa)

6.82

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	128 - 208	1.5e-28	Nudix hydrolase domain
NUDIX	PF00293	221 - 343	2.9e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	579
AccBSI	CCGCTC	1 cut(s)	38
AccII	CGCG	1 cut(s)	197
AciI	CCGC	6 cut(s)	36, 197, 200, 218, 221, 968
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	2 cut(s)	137, 177
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	4 cut(s)	381, 581, 745, 1136
AfiI	CCNNNNNNNGG	3 cut(s)	359, 610, 952
AgsI	TTSAA	6 cut(s)	182, 295, 315, 427, 480, 1141
AjnI	CCWGG	3 cut(s)	59, 187, 208
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	4 cut(s)	28, 803, 1004, 1128
AluI	AGCT	4 cut(s)	28, 803, 1004, 1128
Alw26I	GTCTC	4 cut(s)	37, 49, 821, 833
AlwI	GGATC	1 cut(s)	527
AoxI	GGCC	2 cut(s)	350, 723
ApeKI	GCWGC	3 cut(s)	800, 803, 1001
ApoI	RAATTY	2 cut(s)	137, 177
Asp718I	GGTACC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	4 cut(s)	185, 198, 443, 797
BaeI	ACNNNNGTAYC	2 cut(s)	735, 768
BanI	GGYRCC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	790, 812, 1013
BccI	CCATC	2 cut(s)	87, 353
BceAI	ACGGC	1 cut(s)	1162
BciT130I	CCWGG	3 cut(s)	61, 189, 210
BciVI	GTATCC	2 cut(s)	185, 615
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	4 cut(s)	37, 49, 821, 833
BfaI	CTAG	2 cut(s)	249, 465
BfmI	CTRYAG	2 cut(s)	387, 804
BfuI	GTATCC	2 cut(s)	185, 615
BisI	GCNGC	6 cut(s)	198, 219, 801, 804, 969, 1002
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	6 cut(s)	199, 220, 802, 805, 970, 1003
Bme1390I	CCNGG	4 cut(s)	61, 189, 210, 665
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	77, 581
BmrFI	CCNGG	4 cut(s)	61, 189, 210, 665
BmrI	ACTGGG	1 cut(s)	1125
BmsI	GCATC	3 cut(s)	96, 544, 972
BmuI	ACTGGG	1 cut(s)	1125
BpmI	CTGGAG	1 cut(s)	789
Bpu10I	CCTNAGC	1 cut(s)	531
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	441, 450, 739
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 610, 952
Bse1I	ACTGG	3 cut(s)	772, 1087, 1120
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	61, 189, 210
BseDI	CCNNGG	3 cut(s)	441, 450, 739
BseGI	GGATG	2 cut(s)	111, 987
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	359, 610, 952
BseMII	CTCAG	2 cut(s)	484, 972
BseNI	ACTGG	3 cut(s)	772, 1087, 1120
BseRI	GAGGAG	2 cut(s)	104, 243
BseXI	GCAGC	3 cut(s)	790, 812, 1013
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	352, 725
BshNI	GGYRCC	1 cut(s)	579
BsiSI	CCGG	2 cut(s)	118, 664
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	3 cut(s)	359, 610, 952
BsmAI	GTCTC	4 cut(s)	37, 49, 821, 833
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	2 cut(s)	352, 725
Bsp143I	GATC	2 cut(s)	433, 519
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	6 cut(s)	36, 197, 200, 218, 221, 968
BspANI	GGCC	2 cut(s)	352, 725
BspCNI	CTCAG	2 cut(s)	483, 971
BspFNI	CGCG	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	77, 581
BspMAI	CTGCAG	2 cut(s)	391, 808
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	579
BsrBI	CCGCTC	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	772, 1087, 1120
BssECI	CCNNGG	3 cut(s)	441, 450, 739
BssMI	GATC	2 cut(s)	433, 519
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	3 cut(s)	61, 189, 210
Bst4CI	ACNGT	5 cut(s)	562, 634, 695, 978, 1032
Bst6I	CTCTTC	4 cut(s)	122, 500, 648, 819
BstDEI	CTNAG	4 cut(s)	24, 470, 531, 958
BstEII	GGTNACC	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	111, 987
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	436, 522
BstMAI	GTCTC	4 cut(s)	37, 49, 821, 833
BstMBI	GATC	2 cut(s)	433, 519
BstNI	CCWGG	3 cut(s)	61, 189, 210
BstNSI	RCATGY	1 cut(s)	922
BstPI	GGTNACC	1 cut(s)	204
BstSCI	CCNGG	4 cut(s)	59, 187, 208, 663
BstSFI	CTRYAG	2 cut(s)	387, 804
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	790, 812, 1013
BstXI	CCANNNNNNTGG	1 cut(s)	67
BsuI	GTATCC	2 cut(s)	185, 615
BsuRI	GGCC	2 cut(s)	352, 725
BtsCI	GGATG	2 cut(s)	111, 987
BtsIMutI	CAGTG	3 cut(s)	72, 983, 1113
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	4 cut(s)	380, 580, 744, 1135
CviAII	CATG	5 cut(s)	160, 304, 587, 779, 919
CviQI	GTAC	4 cut(s)	380, 580, 744, 1135
DdeI	CTNAG	4 cut(s)	24, 470, 531, 958
DpnI	GATC	2 cut(s)	435, 521
DpnII	GATC	2 cut(s)	433, 519
Eam1104I	CTCTTC	4 cut(s)	122, 500, 648, 819
EarI	CTCTTC	4 cut(s)	122, 500, 648, 819
Eco130I	CCWWGG	1 cut(s)	441
Eco32I	GATATC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	375
Eco91I	GGTNACC	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	204
EcoRII	CCWGG	3 cut(s)	59, 187, 208
EcoRV	GATATC	1 cut(s)	943
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	5 cut(s)	163, 307, 590, 782, 922
FalI	AAGNNNNNCTT	4 cut(s)	310, 342, 872, 904
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	5 cut(s)	159, 303, 586, 778, 918
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	6 cut(s)	198, 219, 801, 804, 969, 1002
FokI	GGATG	2 cut(s)	118, 994
Fsp4HI	GCNGC	6 cut(s)	198, 219, 801, 804, 969, 1002
FspBI	CTAG	2 cut(s)	249, 465
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	6 cut(s)	198, 219, 801, 804, 969, 1002
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	352, 725
HapII	CCGG	2 cut(s)	118, 664
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	163, 307, 590, 782, 922
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	4 cut(s)	363, 373, 446, 956
HpaII	CCGG	2 cut(s)	118, 664
HphI	GGTGA	4 cut(s)	185, 198, 443, 797
Hpy166II	GTNNAC	2 cut(s)	637, 691
Hpy188I	TCNGA	6 cut(s)	277, 451, 473, 740, 901, 961
Hpy188III	TCNNGA	6 cut(s)	249, 334, 541, 719, 779, 946
Hpy8I	GTNNAC	2 cut(s)	637, 691
HpyAV	CCTTC	3 cut(s)	96, 563, 776
HpyCH4III	ACNGT	5 cut(s)	562, 634, 695, 978, 1032
HpyCH4V	TGCA	6 cut(s)	389, 616, 800, 806, 918, 1001
HpyF3I	CTNAG	4 cut(s)	24, 470, 531, 958
Hsp92II	CATG	5 cut(s)	163, 307, 590, 782, 922
HspAI	GCGC	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	433, 519
Lsp1109I	GCAGC	3 cut(s)	790, 812, 1013
LweI	GCATC	3 cut(s)	96, 544, 972
MaeI	CTAG	2 cut(s)	249, 465
MaeIII	GTNAC	2 cut(s)	204, 483
MalI	GATC	2 cut(s)	435, 521
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	2 cut(s)	433, 519
MboII	GAAGA	8 cut(s)	133, 136, 139, 290, 368, 517, 635, 836
MluCI	AATT	7 cut(s)	137, 148, 177, 422, 524, 834, 1064
MlyI	GAGTC	2 cut(s)	372, 950
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	4 cut(s)	84, 564, 923, 1168
MslI	CAYNNNNRTG	4 cut(s)	84, 783, 917, 1051
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	2 cut(s)	118, 664
MspR9I	CCNGG	4 cut(s)	61, 189, 210, 665
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	3 cut(s)	61, 189, 210
MvnI	CGCG	1 cut(s)	197
NciI	CCSGG	1 cut(s)	665
NdeII	GATC	2 cut(s)	433, 519
NlaIII	CATG	5 cut(s)	163, 307, 590, 782, 922
NlaIV	GGNNCC	2 cut(s)	77, 581
NmuCI	GTSAC	2 cut(s)	204, 483
NsbI	TGCGCA	1 cut(s)	266
NspI	RCATGY	1 cut(s)	922
PagI	TCATGA	1 cut(s)	778
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	373, 446
PkrI	GCNGC	6 cut(s)	199, 220, 802, 805, 970, 1003
PleI	GAGTC	2 cut(s)	371, 950
PpsI	GAGTC	2 cut(s)	371, 950
Psp6I	CCWGG	3 cut(s)	59, 187, 208
PspEI	GGTNACC	1 cut(s)	204
PspGI	CCWGG	3 cut(s)	59, 187, 208
PspN4I	GGNNCC	2 cut(s)	77, 581
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	2 cut(s)	391, 808
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	4 cut(s)	381, 581, 745, 1136
RsaNI	GTAC	4 cut(s)	380, 580, 744, 1135
RseI	CAYNNNNRTG	4 cut(s)	84, 783, 917, 1051
SaqAI	TTAA	4 cut(s)	84, 564, 923, 1168
SatI	GCNGC	6 cut(s)	198, 219, 801, 804, 969, 1002
Sau3AI	GATC	2 cut(s)	433, 519
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	372, 950
ScrFI	CCNGG	4 cut(s)	61, 189, 210, 665
SfaNI	GCATC	3 cut(s)	96, 544, 972
SfcI	CTRYAG	2 cut(s)	387, 804
SmiMI	CAYNNNNRTG	4 cut(s)	84, 783, 917, 1051
Sse9I	AATT	7 cut(s)	137, 148, 177, 422, 524, 834, 1064
SsiI	CCGC	6 cut(s)	36, 197, 200, 218, 221, 968
SspMI	CTAG	2 cut(s)	249, 465
StyD4I	CCNGG	4 cut(s)	59, 187, 208, 663
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	5 cut(s)	562, 634, 695, 978, 1032
TaqI	TCGA	3 cut(s)	333, 366, 542
TasI	AATT	7 cut(s)	137, 148, 177, 422, 524, 834, 1064
TatI	WGTACW	1 cut(s)	1134
TauI	GCSGC	3 cut(s)	200, 221, 971
TfiI	GAWTC	2 cut(s)	373, 446
Tru1I	TTAA	4 cut(s)	84, 564, 923, 1168
Tru9I	TTAA	4 cut(s)	84, 564, 923, 1168
TscAI	CASTG	3 cut(s)	72, 983, 1120
TseFI	GTSAC	2 cut(s)	204, 483
TseI	GCWGC	3 cut(s)	800, 803, 1001
Tsp45I	GTSAC	2 cut(s)	204, 483
TspDTI	ATGAA	6 cut(s)	110, 148, 312, 767, 795, 901
TspRI	CASTG	3 cut(s)	72, 983, 1120
XapI	RAATTY	2 cut(s)	137, 177
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	922
XspI	CTAG	2 cut(s)	249, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.