Rroxscaffold_2G00093430

Nudix hydrolase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
14777555 .. 14784857
7303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093430.1

Sequence Viewer

Length: 1875 bp
ATGCAGAGGTTCAGAGCCACCTCCAAGTTTTTGCCGTACCTTTCAGGGAAGAACATTTCTGCACATTATTCTTCTGGTGTAGTGCTTGCAAAAAGGCCTGGACTTGGAATTACAGTTTCATCCTCCTCCTGGTTTCAGTTTCCCAAAGACCCAAAAGATAAAAATTCATTATTGAATCAAGTCATGTCAGTTTCAACAAGTTCATGTGCTGTTGCAAAGCAATGCTTGATGGCCGAAAGTGGAGTTGAGCAGATTGAATTGCTCAATGCACATGATGATATACATGGGGGAGTTGTTGTAGACATGAAAGACCAGCCCATGGATTCTGAGGTCTTTGGTTCTTTGCTCAAAGCTTCACTGTCAGAATGGAGGCAAAAGGAAAAGAAGGGTGTTTGGATCAAATTGCCAATTGAACTCTCAAATCTTGTTCATGCTGCAGTTCAGGAAGGATTTACTTATCACCATGCTGAATCAGATTACCTAATGCTTAAACGTTGGCTGCCTGAAACTGTTGATACCCTTCCTGCGAATGCCTCTCATCGAGTGGGCATTGGTGCTTTCATCATGAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGATCAATGGCAGATTCAAAGATACAGGTGTCTGGAAGATGCCAACTGGGGCTGTTAATGAAGGAGAGGATATTTGTGCAGCAGCAGTTAGGGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTTGTGGAAATATTAGCGTTCAGGCAAAGCCACAAGTCATTCTTTCAAAAATCAGATTTATTTTTTGTTTGCATGTTAAAACCGCAAACCTTTGACATACAGGAGCAGAATCAAGAGATTGCAGCAGCCCAGTGGATGCCATTTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAACTCTTTGATTATGTAGCAGAAATATGTTTGGCAAAAACAGATGAGCATTATACTGAAGATAAAAATCCTTTGAATCAAGTCATGTCGGTTTCGACAAGTTTATCCTCTGTTGAAGAACAAGTAATCACACCTGAAAATGGAGTTGAGCAGATTCAGTTGCTTGCTGCGGTTGAGGATTCATATGAGGGAGTAGTTGTGGACATGAACGATCATCAGCCCTTGGATTCTGAAGTTTTTACTTCTTTGCTCAGAGCTTCAATGTCACAATGGAAGCAAAAGGGGAAGAGGGGCATTTGGATCAAATTGCCTATTAAACTTTCGAATCTTGTTGATGCTACAGTTAAGGAAGGATTTCGGTACCACCATGCCGAACCAGATTACCTAATGCTCGTGCACTGGATTCCTGAAACGGTTGATACTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCATGAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGGTCAGTGGCTTTTTTAGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTGAATGAAGGTGAGGATATTTTTGCAGCTGCTGTTAGAGAAGTCAAAGAAGAGACTGGAATTGAGACAGAATTTGTGGAAATTTTAGCATTTAGTCAAAGCCATGAGGAATTCTTTCGGAAATCAGATTTGTTTTTCGTTTGCATGTTAGAACCACATTCCTTTGACATCCAGAGGCAGAACCTAGAGATTGCAGCAGCCCAGTGGATGCCGATTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAGCTGTTTAATGATGTAGCACAAATATGTTTGGCAAAATCAGATAAGGACTATACCGGTTTTACTCCTCTGGGAACAACTACATCCTCCGGAAAAGCAAACTACTTGTACTTGAACAATCACGATATGGTTAAATTACTGAATTCTAGTACTGATCAGCACTAG

Protein Analysis

624

Amino Acids

70.3

Weight (kDa)

5.22

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nudix_hydro PF18290 88 - 167 9.4e-31 Nudix hydrolase domain
NUDIX PF00293 180 - 300 7e-24 NUDIX domain
Nudix_hydro PF18290 356 - 436 3.1e-30 Nudix hydrolase domain
NUDIX PF00293 449 - 569 1.6e-22 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1263
AccB1I GGYRCC 1 cut(s) 1263
AccB7I CCANNNNNTGG 1 cut(s) 319
AccI GTMKAC 1 cut(s) 300
AccIII TCCGGA 1 cut(s) 1799
AciI CCGC 2 cut(s) 806, 1073
AclI AACGTT 1 cut(s) 493
AclWI GGATC 2 cut(s) 404, 1211
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 5 cut(s) 163, 1529, 1539, 1568, 1852
AcuI CTGAAG 2 cut(s) 981, 1155
AfaI GTAC 4 cut(s) 38, 1265, 1820, 1861
AfiI CCNNNNNNNGG 4 cut(s) 104, 129, 319, 1043
AgeI ACCGGT 1 cut(s) 1766
AjnI CCWGG 2 cut(s) 97, 128
AluBI AGCT 6 cut(s) 353, 881, 1160, 1487, 1688, 1714
AluI AGCT 6 cut(s) 353, 881, 1160, 1487, 1688, 1714
Alw21I GWGCWC 1 cut(s) 1302
Alw26I GTCTC 4 cut(s) 698, 710, 1505, 1517
Alw44I GTGCAC 1 cut(s) 1298
AlwI GGATC 2 cut(s) 404, 1211
AlwNI CAGNNNCTG 1 cut(s) 1490
Aor13HI TCCGGA 1 cut(s) 1799
AoxI GGCC 2 cut(s) 95, 231
ApaLI GTGCAC 1 cut(s) 1298
ApoI RAATTY 5 cut(s) 163, 1529, 1539, 1568, 1852
AsiGI ACCGGT 1 cut(s) 1766
Asp700I GAANNNNTTC 2 cut(s) 1257, 1572
Asp718I GGTACC 1 cut(s) 1263
AsuC2I CCSGG 1 cut(s) 1349
AsuHPI GGTGA 2 cut(s) 452, 1481
AsuII TTCGAA 1 cut(s) 1226
BaeGI GKGCMC 1 cut(s) 1302
BaeI ACNNNNGTAYC 4 cut(s) 612, 645, 1419, 1452
BanI GGYRCC 1 cut(s) 1263
BauI CACGAG 1 cut(s) 1295
Bbv12I GWGCWC 1 cut(s) 1302
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 2 cut(s) 99, 130
BclI TGATCA 1 cut(s) 1864
BcnI CCSGG 1 cut(s) 1349
BcoDI GTCTC 4 cut(s) 698, 710, 1505, 1517
BfaI CTAG 3 cut(s) 1643, 1857, 1873
BfmI CTRYAG 2 cut(s) 435, 1242
BmcAI AGTACT 1 cut(s) 1861
Bme1390I CCNGG 3 cut(s) 99, 130, 1349
BmiI GGNNCC 1 cut(s) 1265
BmrFI CCNGG 3 cut(s) 99, 130, 1349
BmrI ACTGGG 3 cut(s) 654, 847, 1654
BmsI GCATC 4 cut(s) 627, 849, 1228, 1656
BmuI ACTGGG 3 cut(s) 654, 847, 1654
BpmI CTGGAG 1 cut(s) 1473
Bpu14I TTCGAA 1 cut(s) 1226
BpuMI CCSGG 1 cut(s) 1349
BsaBI GATNNNNATC 1 cut(s) 969
BsaJI CCNNGG 2 cut(s) 318, 1125
BsaWI WCCGGW 2 cut(s) 1766, 1799
BsaXI ACNNNNNCTCC 6 cut(s) 282, 312, 1086, 1116, 1315, 1345
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 129, 319, 1043
Bse118I RCCGGY 1 cut(s) 1766
Bse1I ACTGG 6 cut(s) 649, 853, 1307, 1456, 1519, 1660
Bse3DI GCAATG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 969
BseAI TCCGGA 1 cut(s) 1799
BseBI CCWGG 2 cut(s) 99, 130
BseDI CCNNGG 2 cut(s) 318, 1125
BseGI GGATG 5 cut(s) 119, 864, 1626, 1671, 1793
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 4 cut(s) 104, 129, 319, 1043
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 318, 1168
BseNI ACTGG 6 cut(s) 649, 853, 1307, 1456, 1519, 1660
BseRI GAGGAG 2 cut(s) 115, 1767
BseSI GKGCMC 1 cut(s) 1302
BsgI GTGCAG 2 cut(s) 45, 696
BshFI GGCC 2 cut(s) 97, 233
BshNI GGYRCC 1 cut(s) 1263
BshTI ACCGGT 1 cut(s) 1766
BsiHKAI GWGCWC 1 cut(s) 1302
BsiSI CCGG 3 cut(s) 1348, 1767, 1800
BslI CCNNNNNNNGG 4 cut(s) 104, 129, 319, 1043
BsmAI GTCTC 4 cut(s) 698, 710, 1505, 1517
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 2 cut(s) 97, 233
Bsp119I TTCGAA 1 cut(s) 1226
Bsp1286I GDGCHC 1 cut(s) 1302
Bsp13I TCCGGA 1 cut(s) 1799
Bsp143I GATC 5 cut(s) 396, 600, 1114, 1203, 1864
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 2 cut(s) 806, 1073
BspANI GGCC 2 cut(s) 97, 233
BspCNI CTCAG 2 cut(s) 319, 1167
BspEI TCCGGA 1 cut(s) 1799
BspHI TCATGA 2 cut(s) 564, 1371
BspLI GGNNCC 1 cut(s) 1265
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 2 cut(s) 404, 1211
BspT104I TTCGAA 1 cut(s) 1226
BspT107I GGYRCC 1 cut(s) 1263
BsrDI GCAATG 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 1766
BsrI ACTGG 6 cut(s) 649, 853, 1307, 1456, 1519, 1660
BssAI RCCGGY 1 cut(s) 1766
BssECI CCNNGG 2 cut(s) 318, 1125
BssMI GATC 5 cut(s) 396, 600, 1114, 1203, 1864
BssSI CACGAG 1 cut(s) 1295
BssT1I CCWWGG 2 cut(s) 318, 1125
Bst2BI CACGAG 1 cut(s) 1295
Bst2UI CCWGG 2 cut(s) 99, 130
Bst4CI ACNGT 7 cut(s) 115, 360, 511, 572, 1246, 1318, 1379
Bst6I CTCTTC 4 cut(s) 696, 1184, 1332, 1503
BstBI TTCGAA 1 cut(s) 1226
BstC8I GCNNGC 2 cut(s) 87, 1068
BstDEI CTNAG 2 cut(s) 327, 1154
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 5 cut(s) 119, 864, 1626, 1671, 1793
BstKTI GATC 5 cut(s) 399, 603, 1117, 1206, 1867
BstMAI GTCTC 4 cut(s) 698, 710, 1505, 1517
BstMBI GATC 5 cut(s) 396, 600, 1114, 1203, 1864
BstNI CCWGG 2 cut(s) 99, 130
BstNSI RCATGY 2 cut(s) 799, 1606
BstSCI CCNGG 3 cut(s) 97, 128, 1347
BstSFI CTRYAG 2 cut(s) 435, 1242
BstSLI GKGCMC 1 cut(s) 1302
BsuRI GGCC 2 cut(s) 97, 233
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 5 cut(s) 119, 864, 1626, 1671, 1793
BtsIMutI CAGTG 5 cut(s) 356, 860, 1300, 1417, 1667
Cac8I GCNNGC 2 cut(s) 87, 1068
CaiI CAGNNNCTG 1 cut(s) 1490
CciI TCATGA 2 cut(s) 564, 1371
Cfr10I RCCGGY 1 cut(s) 1766
Csp6I GTAC 4 cut(s) 37, 1264, 1819, 1860
CspAI ACCGGT 1 cut(s) 1766
CviQI GTAC 4 cut(s) 37, 1264, 1819, 1860
DdeI CTNAG 2 cut(s) 327, 1154
DpnI GATC 5 cut(s) 398, 602, 1116, 1205, 1866
DpnII GATC 5 cut(s) 396, 600, 1114, 1203, 1864
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 4 cut(s) 696, 1184, 1332, 1503
EarI CTCTTC 4 cut(s) 696, 1184, 1332, 1503
Eco130I CCWWGG 2 cut(s) 318, 1125
Eco147I AGGCCT 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 981, 1155
EcoRI GAATTC 2 cut(s) 1568, 1852
EcoRII CCWGG 2 cut(s) 97, 128
EcoT14I CCWWGG 2 cut(s) 318, 1125
ErhI CCWWGG 2 cut(s) 318, 1125
FalI AAGNNNNNCTT 4 cut(s) 209, 241, 749, 781
FauNDI CATATG 1 cut(s) 1087
FbaI TGATCA 1 cut(s) 1864
FblI GTMKAC 1 cut(s) 300
FokI GGATG 5 cut(s) 106, 871, 1613, 1678, 1780
FspBI CTAG 3 cut(s) 1643, 1857, 1873
GsuI CTGGAG 1 cut(s) 1473
HaeIII GGCC 2 cut(s) 97, 233
HapII CCGG 3 cut(s) 1348, 1767, 1800
HindIII AAGCTT 1 cut(s) 351
HpaII CCGG 3 cut(s) 1348, 1767, 1800
HphI GGTGA 2 cut(s) 452, 1481
Hpy166II GTNNAC 3 cut(s) 301, 1105, 1300
Hpy8I GTNNAC 3 cut(s) 301, 1105, 1300
HpyAV CCTTC 6 cut(s) 379, 440, 530, 653, 1247, 1460
HpyCH4III ACNGT 7 cut(s) 115, 360, 511, 572, 1246, 1318, 1379
HpyCH4IV ACGT 1 cut(s) 493
HpyF3I CTNAG 2 cut(s) 327, 1154
HpySE526I ACGT 1 cut(s) 493
Kpn2I TCCGGA 1 cut(s) 1799
KpnI GGTACC 1 cut(s) 1267
Ksp22I TGATCA 1 cut(s) 1864
Kzo9I GATC 5 cut(s) 396, 600, 1114, 1203, 1864
LmnI GCTCC 1 cut(s) 826
LweI GCATC 4 cut(s) 627, 849, 1228, 1656
MaeI CTAG 3 cut(s) 1643, 1857, 1873
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 1 cut(s) 1167
MalI GATC 5 cut(s) 398, 602, 1116, 1205, 1866
MboI GATC 5 cut(s) 396, 600, 1114, 1203, 1864
MboII GAAGA 9 cut(s) 61, 63, 646, 713, 974, 1031, 1201, 1319, 1520
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 1302
MroI TCCGGA 1 cut(s) 1799
MroXI GAANNNNTTC 2 cut(s) 1257, 1572
MseI TTAA 7 cut(s) 489, 654, 800, 1218, 1248, 1719, 1842
MslI CAYNNNNRTG 1 cut(s) 1735
MspA1I CMGCKG 1 cut(s) 1487
MspI CCGG 3 cut(s) 1348, 1767, 1800
MspR9I CCNGG 3 cut(s) 99, 130, 1349
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 2 cut(s) 99, 130
NciI CCSGG 1 cut(s) 1349
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 1087
NdeII GATC 5 cut(s) 396, 600, 1114, 1203, 1864
NlaIV GGNNCC 1 cut(s) 1265
NmuCI GTSAC 1 cut(s) 1167
NspI RCATGY 2 cut(s) 799, 1606
NspV TTCGAA 1 cut(s) 1226
PagI TCATGA 2 cut(s) 564, 1371
PceI AGGCCT 1 cut(s) 97
PctI GAATGC 1 cut(s) 535
PdmI GAANNNNTTC 2 cut(s) 1257, 1572
PflMI CCANNNNNTGG 1 cut(s) 319
PinAI ACCGGT 1 cut(s) 1766
Psp1406I AACGTT 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 97, 128
PspGI CCWGG 2 cut(s) 97, 128
PspN4I GGNNCC 1 cut(s) 1265
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 1490
PvuII CAGCTG 1 cut(s) 1487
RsaI GTAC 4 cut(s) 38, 1265, 1820, 1861
RsaNI GTAC 4 cut(s) 37, 1264, 1819, 1860
RseI CAYNNNNRTG 1 cut(s) 1735
SaqAI TTAA 7 cut(s) 489, 654, 800, 1218, 1248, 1719, 1842
Sau3AI GATC 5 cut(s) 396, 600, 1114, 1203, 1864
ScaI AGTACT 1 cut(s) 1861
ScrFI CCNGG 3 cut(s) 99, 130, 1349
SduI GDGCHC 1 cut(s) 1302
SfaNI GCATC 4 cut(s) 627, 849, 1228, 1656
SfcI CTRYAG 2 cut(s) 435, 1242
SfuI TTCGAA 1 cut(s) 1226
SmiMI CAYNNNNRTG 1 cut(s) 1735
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 2 cut(s) 806, 1073
SspI AATATT 1 cut(s) 735
SspMI CTAG 3 cut(s) 1643, 1857, 1873
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 3 cut(s) 97, 128, 1347
StyI CCWWGG 2 cut(s) 318, 1125
TaaI ACNGT 7 cut(s) 115, 360, 511, 572, 1246, 1318, 1379
TaiI ACGT 1 cut(s) 496
TaqI TCGA 3 cut(s) 541, 998, 1226
TatI WGTACW 2 cut(s) 1818, 1859
Tru1I TTAA 7 cut(s) 489, 654, 800, 1218, 1248, 1719, 1842
Tru9I TTAA 7 cut(s) 489, 654, 800, 1218, 1248, 1719, 1842
TscAI CASTG 5 cut(s) 363, 860, 1307, 1417, 1667
TseFI GTSAC 1 cut(s) 1167
Tsp45I GTSAC 1 cut(s) 1167
TspRI CASTG 5 cut(s) 363, 860, 1307, 1417, 1667
Van91I CCANNNNNTGG 1 cut(s) 319
VneI GTGCAC 1 cut(s) 1298
XapI RAATTY 5 cut(s) 163, 1529, 1539, 1568, 1852
XceI RCATGY 2 cut(s) 799, 1606
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 2 cut(s) 1257, 1572
XspI CTAG 3 cut(s) 1643, 1857, 1873
ZrmI AGTACT 1 cut(s) 1861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.