Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

76674933 .. 76677081

Gene Structure 2149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG536900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCGGTTTCAACAAGTTTATCCTTTGTTGAAGAACAAGTAATCACACCTGAAAATGAAGTTGAGCAGTTTCAGTTGCTTGCTGCGGTTGAGGATTCATATGAGGGAGTAGTTGTGGACATGAACGATCATCAGCCCTTGGATTCTGAAGTTTTTACTTCTTTGCTCAGAGCTTCAATGTCACAATGGAAGCAAAAGGGGAAGAGGGGCATTTGGATCAAATTGCCTATTAAACTTTCGAATCTTGTTGATGCTGCAGTTAAGCAAGGATTTCGGTACCACCATGCCGAACCAGATTACCTAATGCTCGTGCACTGGATTCCTGAAACGGTTGATACTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCATGAACAGTAAAAGAGAGGTGCTTGTGGTTCAGGAGGTCAGTGGCTTTTTTAGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTGAATGGAGGTGAGGATATTTTTGCAGCTGCTGTTAGAGAAGTCAAAGAAGAGACTGGAATTGAGACAGAATTTGTGGAAATTTTAGCATTTAGTCAAAGCCATGAGGAATTCTTTCGAAAATCAGATTTGTTTTTCGTTTGCATGTTAGAACCACATTCCTTTGACATCCAGAAGCAGAACCTAGAGATTGCAGCAGCCCAGTGGATGCCGATTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAGCCGTTTAATGATGTAGCACAAATATGTTTGGCAAAATCAGATAAGGACTATACCGGTTTTACTCCTCTGGGAACAACTACATCCTCCGGAAAAGCAAACTACTTGTACTTGAACAATCACGATATGGTTAAATTACTGACTTCTAGCACTGATCAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

295

Amino Acids

33.27

Weight (kDa)

4.95

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	27 - 107	2.4e-31	Nudix hydrolase domain
NUDIX	PF00293	120 - 244	9.4e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	812
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	3 cut(s)	542, 552, 581
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	2 cut(s)	278, 833
AgeI	ACCGGT	1 cut(s)	779
AgsI	TTSAA	4 cut(s)	12, 32, 177, 838
AluBI	AGCT	3 cut(s)	173, 500, 701
AluI	AGCT	3 cut(s)	173, 500, 701
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	518, 530
Alw44I	GTGCAC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	812
ApaLI	GTGCAC	1 cut(s)	311
ApeKI	GCWGC	7 cut(s)	83, 254, 497, 500, 665, 668, 698
ApoI	RAATTY	3 cut(s)	542, 552, 581
AsiGI	ACCGGT	1 cut(s)	779
Asp700I	GAANNNNTTC	1 cut(s)	585
Asp718I	GGTACC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	494
AsuII	TTCGAA	2 cut(s)	239, 589
BaeGI	GKGCMC	1 cut(s)	315
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BanI	GGYRCC	1 cut(s)	276
BauI	CACGAG	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	7 cut(s)	70, 241, 487, 509, 677, 680, 710
BceAI	ACGGC	1 cut(s)	712
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	518, 530
BfaI	CTAG	3 cut(s)	656, 870, 886
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	7 cut(s)	84, 255, 498, 501, 666, 669, 699
BlsI	GCNGC	7 cut(s)	85, 256, 499, 502, 667, 670, 700
Bme1390I	CCNGG	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	241, 669
BmuI	ACTGGG	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	486
Bpu14I	TTCGAA	2 cut(s)	239, 589
BpuMI	CCSGG	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	2 cut(s)	779, 812
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 328, 358
Bse118I	RCCGGY	1 cut(s)	779
Bse1I	ACTGG	4 cut(s)	320, 469, 532, 673
BseAI	TCCGGA	1 cut(s)	812
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	639, 684, 806
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	4 cut(s)	320, 469, 532, 673
BseRI	GAGGAG	1 cut(s)	780
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	7 cut(s)	70, 241, 487, 509, 677, 680, 710
BshNI	GGYRCC	1 cut(s)	276
BshTI	ACCGGT	1 cut(s)	779
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	361, 780, 813
BsmAI	GTCTC	2 cut(s)	518, 530
Bsp119I	TTCGAA	2 cut(s)	239, 589
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp13I	TCCGGA	1 cut(s)	812
Bsp143I	GATC	3 cut(s)	127, 216, 877
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	224
BspT104I	TTCGAA	2 cut(s)	239, 589
BspT107I	GGYRCC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	779
BsrI	ACTGG	4 cut(s)	320, 469, 532, 673
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	127, 216, 877
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	331, 392
Bst6I	CTCTTC	3 cut(s)	197, 345, 516
BstBI	TTCGAA	2 cut(s)	239, 589
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	639, 684, 806
BstKTI	GATC	3 cut(s)	130, 219, 880
BstMAI	GTCTC	2 cut(s)	518, 530
BstMBI	GATC	3 cut(s)	127, 216, 877
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	7 cut(s)	70, 241, 487, 509, 677, 680, 710
BtsCI	GGATG	3 cut(s)	639, 684, 806
BtsIMutI	CAGTG	4 cut(s)	313, 430, 680, 873
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	779
Csp6I	GTAC	2 cut(s)	277, 832
CspAI	ACCGGT	1 cut(s)	779
CviAII	CATG	5 cut(s)	121, 284, 385, 575, 616
CviJI	RGCY	8 cut(s)	136, 173, 429, 500, 573, 671, 701, 727
CviKI_1	RGCY	8 cut(s)	136, 173, 429, 500, 573, 671, 701, 727
CviQI	GTAC	2 cut(s)	277, 832
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	3 cut(s)	129, 218, 879
DpnII	GATC	3 cut(s)	127, 216, 877
Eam1104I	CTCTTC	3 cut(s)	197, 345, 516
EarI	CTCTTC	3 cut(s)	197, 345, 516
Eco130I	CCWWGG	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	124, 287, 388, 578, 619
FatI	CATG	5 cut(s)	120, 283, 384, 574, 615
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	7 cut(s)	84, 255, 498, 501, 666, 669, 699
FokI	GGATG	3 cut(s)	626, 691, 793
Fsp4HI	GCNGC	7 cut(s)	84, 255, 498, 501, 666, 669, 699
FspBI	CTAG	3 cut(s)	656, 870, 886
GluI	GCNGC	7 cut(s)	84, 255, 498, 501, 666, 669, 699
GsuI	CTGGAG	1 cut(s)	486
HapII	CCGG	3 cut(s)	361, 780, 813
Hin1II	CATG	5 cut(s)	124, 287, 388, 578, 619
HinfI	GANTC	4 cut(s)	95, 143, 241, 319
HpaII	CCGG	3 cut(s)	361, 780, 813
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	118, 313
Hpy188I	TCNGA	4 cut(s)	148, 170, 598, 766
Hpy188III	TCNNGA	6 cut(s)	323, 385, 416, 643, 813, 845
Hpy8I	GTNNAC	2 cut(s)	118, 313
HpyCH4III	ACNGT	2 cut(s)	331, 392
HpyCH4V	TGCA	6 cut(s)	257, 313, 497, 615, 665, 698
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	5 cut(s)	124, 287, 388, 578, 619
Kpn2I	TCCGGA	1 cut(s)	812
KpnI	GGTACC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	3 cut(s)	127, 216, 877
Lsp1109I	GCAGC	7 cut(s)	70, 241, 487, 509, 677, 680, 710
LweI	GCATC	2 cut(s)	241, 669
MaeI	CTAG	3 cut(s)	656, 870, 886
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	3 cut(s)	129, 218, 879
MboI	GATC	3 cut(s)	127, 216, 877
MboII	GAAGA	4 cut(s)	44, 214, 332, 533
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	6 cut(s)	221, 531, 542, 552, 581, 857
MroI	TCCGGA	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	4 cut(s)	231, 261, 732, 855
MslI	CAYNNNNRTG	1 cut(s)	748
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	3 cut(s)	361, 780, 813
MspR9I	CCNGG	1 cut(s)	362
NciI	CCSGG	1 cut(s)	362
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	3 cut(s)	127, 216, 877
NlaIII	CATG	5 cut(s)	124, 287, 388, 578, 619
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	619
NspV	TTCGAA	2 cut(s)	239, 589
PagI	TCATGA	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	4 cut(s)	95, 143, 241, 319
PinAI	ACCGGT	1 cut(s)	779
PkrI	GCNGC	7 cut(s)	85, 256, 499, 502, 667, 670, 700
PspN4I	GGNNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	503
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	278, 833
RsaNI	GTAC	2 cut(s)	277, 832
RseI	CAYNNNNRTG	1 cut(s)	748
SaqAI	TTAA	4 cut(s)	231, 261, 732, 855
SatI	GCNGC	7 cut(s)	84, 255, 498, 501, 666, 669, 699
Sau3AI	GATC	3 cut(s)	127, 216, 877
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	241, 669
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	2 cut(s)	239, 589
SmiMI	CAYNNNNRTG	1 cut(s)	748
Sse9I	AATT	6 cut(s)	221, 531, 542, 552, 581, 857
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	3 cut(s)	656, 870, 886
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	331, 392
TaqI	TCGA	2 cut(s)	239, 589
TasI	AATT	6 cut(s)	221, 531, 542, 552, 581, 857
TatI	WGTACW	1 cut(s)	831
TfiI	GAWTC	4 cut(s)	95, 143, 241, 319
Tru1I	TTAA	4 cut(s)	231, 261, 732, 855
Tru9I	TTAA	4 cut(s)	231, 261, 732, 855
TscAI	CASTG	4 cut(s)	320, 430, 680, 880
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	7 cut(s)	83, 254, 497, 500, 665, 668, 698
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	4 cut(s)	72, 87, 137, 401
TspRI	CASTG	4 cut(s)	320, 430, 680, 880
VneI	GTGCAC	1 cut(s)	311
XapI	RAATTY	3 cut(s)	542, 552, 581
XceI	RCATGY	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	3 cut(s)	656, 870, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.