Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005929.1

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

34969 .. 36993

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005929.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgtcggtttcaacaagtttatcctttgttgaagaacaagtaatcacacctgaaaatgaagttgagcagtttcagttgcttgctgcggttgaggattcatatgagggagtagttgtggacatgaacgatcatcagcccttggattctaaagtttttacttctttgctcagatcttcaatgtcacaatggaagcaaaaggggaagaggggcatttggatcaaattgcctattaaactttcgaatcttgttgatgctgcagttaaggaaggatttcggtaccaccatgccgaaccagattacctaatgctcgtgcattggattcctgaaatggttgatactcttcctccaaatgcttcacaccgggtgcttatggttcaggaggtcagtggcttttttagagatacaggtgtatggaagttgccaactggagttgtgaatgaaggtgaggatatttttgcagctgctgttagagaagtcaaagaagagactggaattgagacagaatttgtggaaattttagcatttagtcaaagccatgaggaagtctttcgaaaatcagatctgtttttcgtttgcatgttagaaccacattcctttgacatccagaagcagaacctagagattgcagcagcccagtggatgccgattgaggactatgcagctcaaccctttgtcaaacaaaacaagccgtttaatgatgtagcacaaatatgtttggcaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

241

Amino Acids

27.48

Weight (kDa)

4.8

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	2 cut(s)	503, 513
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	12, 32, 177
AluBI	AGCT	2 cut(s)	461, 662
AluI	AGCT	2 cut(s)	461, 662
Alw26I	GTCTC	2 cut(s)	479, 491
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	464
ApeKI	GCWGC	7 cut(s)	83, 254, 458, 461, 626, 629, 659
ApoI	RAATTY	2 cut(s)	503, 513
Asp700I	GAANNNNTTC	2 cut(s)	270, 546
Asp718I	GGTACC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	2 cut(s)	239, 550
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BanI	GGYRCC	1 cut(s)	276
BauI	CACGAG	1 cut(s)	308
BbvI	GCAGC	7 cut(s)	70, 241, 448, 470, 638, 641, 671
BceAI	ACGGC	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	479, 491
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	255
BglII	AGATCT	2 cut(s)	170, 559
BisI	GCNGC	7 cut(s)	84, 255, 459, 462, 627, 630, 660
BlsI	GCNGC	7 cut(s)	85, 256, 460, 463, 628, 631, 661
Bme1390I	CCNGG	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	2 cut(s)	241, 630
BmuI	ACTGGG	1 cut(s)	628
BpmI	CTGGAG	1 cut(s)	447
Bpu14I	TTCGAA	2 cut(s)	239, 550
BpuMI	CCSGG	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	138
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 328, 358
Bse1I	ACTGG	3 cut(s)	430, 493, 634
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	600, 645
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	3 cut(s)	430, 493, 634
BseXI	GCAGC	7 cut(s)	70, 241, 448, 470, 638, 641, 671
BshNI	GGYRCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	479, 491
Bsp119I	TTCGAA	2 cut(s)	239, 550
Bsp143I	GATC	4 cut(s)	127, 170, 216, 559
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	224
BspT104I	TTCGAA	2 cut(s)	239, 550
BspT107I	GGYRCC	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	430, 493, 634
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	127, 170, 216, 559
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	308
Bst6I	CTCTTC	3 cut(s)	197, 345, 477
BstBI	TTCGAA	2 cut(s)	239, 550
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	600, 645
BstKTI	GATC	4 cut(s)	130, 173, 219, 562
BstMAI	GTCTC	2 cut(s)	479, 491
BstMBI	GATC	4 cut(s)	127, 170, 216, 559
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	7 cut(s)	70, 241, 448, 470, 638, 641, 671
BstX2I	RGATCY	2 cut(s)	170, 559
BstYI	RGATCY	2 cut(s)	170, 559
BtsCI	GGATG	2 cut(s)	600, 645
BtsIMutI	CAGTG	2 cut(s)	391, 641
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	4 cut(s)	121, 284, 536, 577
CviJI	RGCY	7 cut(s)	136, 390, 461, 534, 632, 662, 688
CviKI_1	RGCY	7 cut(s)	136, 390, 461, 534, 632, 662, 688
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	4 cut(s)	129, 172, 218, 561
DpnII	GATC	4 cut(s)	127, 170, 216, 559
DraIII	CACNNNGTG	1 cut(s)	364
Eam1104I	CTCTTC	3 cut(s)	197, 345, 477
EarI	CTCTTC	3 cut(s)	197, 345, 477
Eco130I	CCWWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	4 cut(s)	124, 287, 539, 580
FatI	CATG	4 cut(s)	120, 283, 535, 576
FauNDI	CATATG	1 cut(s)	100
Fnu4HI	GCNGC	7 cut(s)	84, 255, 459, 462, 627, 630, 660
FokI	GGATG	2 cut(s)	587, 652
Fsp4HI	GCNGC	7 cut(s)	84, 255, 459, 462, 627, 630, 660
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	7 cut(s)	84, 255, 459, 462, 627, 630, 660
GsuI	CTGGAG	1 cut(s)	447
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	4 cut(s)	124, 287, 539, 580
HinfI	GANTC	4 cut(s)	95, 143, 241, 319
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	170, 559
Hpy188III	TCNNGA	3 cut(s)	323, 377, 604
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	260, 434
HpyCH4V	TGCA	6 cut(s)	257, 313, 458, 576, 626, 659
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	4 cut(s)	124, 287, 539, 580
KpnI	GGTACC	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	127, 170, 216, 559
Lsp1109I	GCAGC	7 cut(s)	70, 241, 448, 470, 638, 641, 671
LweI	GCATC	2 cut(s)	241, 630
MaeI	CTAG	1 cut(s)	617
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	4 cut(s)	129, 172, 218, 561
MboI	GATC	4 cut(s)	127, 170, 216, 559
MboII	GAAGA	5 cut(s)	44, 165, 214, 332, 494
MflI	RGATCY	2 cut(s)	170, 559
MluCI	AATT	4 cut(s)	221, 492, 503, 513
MnlI	CCTC	8 cut(s)	85, 97, 198, 354, 373, 439, 532, 643
MroXI	GAANNNNTTC	2 cut(s)	270, 546
MseI	TTAA	3 cut(s)	231, 261, 693
MslI	CAYNNNNRTG	1 cut(s)	709
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	362
NciI	CCSGG	1 cut(s)	362
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	4 cut(s)	127, 170, 216, 559
NlaIII	CATG	4 cut(s)	124, 287, 539, 580
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	580
NspV	TTCGAA	2 cut(s)	239, 550
PdmI	GAANNNNTTC	2 cut(s)	270, 546
PfeI	GAWTC	4 cut(s)	95, 143, 241, 319
PkrI	GCNGC	7 cut(s)	85, 256, 460, 463, 628, 631, 661
PspN4I	GGNNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	170, 559
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	709
SaqAI	TTAA	3 cut(s)	231, 261, 693
SatI	GCNGC	7 cut(s)	84, 255, 459, 462, 627, 630, 660
Sau3AI	GATC	4 cut(s)	127, 170, 216, 559
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	8 cut(s)	52, 303, 384, 409, 445, 463, 618, 664
SfaNI	GCATC	2 cut(s)	241, 630
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	2 cut(s)	239, 550
SmiMI	CAYNNNNRTG	1 cut(s)	709
Sse9I	AATT	4 cut(s)	221, 492, 503, 513
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	2 cut(s)	239, 550
TasI	AATT	4 cut(s)	221, 492, 503, 513
TfiI	GAWTC	4 cut(s)	95, 143, 241, 319
Tru1I	TTAA	3 cut(s)	231, 261, 693
Tru9I	TTAA	3 cut(s)	231, 261, 693
TscAI	CASTG	2 cut(s)	391, 641
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	7 cut(s)	83, 254, 458, 461, 626, 629, 659
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	4 cut(s)	72, 87, 137, 453
TspRI	CASTG	2 cut(s)	391, 641
XapI	RAATTY	2 cut(s)	503, 513
XceI	RCATGY	1 cut(s)	580
XmnI	GAANNNNTTC	2 cut(s)	270, 546
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.