Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

69712549 .. 69714687

Gene Structure 2139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCAGTTTCAACAAGTTCATCTTTTGTCGAGAAACAAGTGATTGAGCCTGAAGATGGAGTCGAGCAGATTCAGGTACTTCCTGCAGTTGAGGATAAGTATGGTGGAGTTGTTGTGGAATTGAAGGGTGATCAACCCTGGGATTCTGAGGTTTATACTTCTTTGCTCAGATTTTCAATGTCACAATGGAAACAAAAGGGGAAGAAGGGCGTTTGGATCAAATTGCCTACGCAACTCTCGAACCTTGTTGATGCGACAGTTAAGGAAGGATTTAGGTACCACCATGCCGAACCAGATTACCTAATGCTGGTGCATTGGATACCTGAAACAGTTGATCCTCTTCCTCCAAATGCTTCACACCGGGTAGGCATTGGTGCTTTTGTCGTAAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGGCCAATGGCTTTTTCCGAGATACAGGTGTATGGAAGTTGCCAACTGGAGTTGTTGATGAAGGTGAGGATATTTTCGCGGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTTGTGGAAATGTTAGCATTTAGGCACAGCCACAAGGCATTCTTTAGAAAATCGGATTTGTTTTTCGTTTGCATGTTAAAACCACATTCCTTTGACATCCAGAAGCAGGATTTAGAGATTGCGGCAGCACAGTGGATGCCGATTGAGGACTATGCAGCTCAACCTTTCGTCAAAGAAAACAAACTGTTTGATGATGTAGCACAAATATGTTTAACGAAATTGGATAAGGACCATGCTGGTTTTACTTCTCTGGCAACAACTACTTCCTCTGGGAAAACCAGCTACTTGTACTTCAACAACCGCGATATGGGAAACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

288

Amino Acids

32.44

Weight (kDa)

5.17

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	27 - 107	1.7e-28	Nudix hydrolase domain
NUDIX	PF00293	120 - 241	1.7e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AccII	CGCG	2 cut(s)	497, 846
AciI	CCGC	3 cut(s)	497, 665, 844
AclWI	GGATC	2 cut(s)	224, 329
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	3 cut(s)	78, 278, 833
AfiI	CCNNNNNNNGG	4 cut(s)	56, 307, 649, 850
AgsI	TTSAA	4 cut(s)	12, 124, 177, 838
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	2 cut(s)	701, 825
AluI	AGCT	2 cut(s)	701, 825
Alw26I	GTCTC	2 cut(s)	518, 530
AlwI	GGATC	2 cut(s)	224, 329
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	3 cut(s)	500, 668, 698
Asp718I	GGTACC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	772
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	140, 494
AvaII	GGWCC	1 cut(s)	772
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BanI	GGYRCC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	487, 680, 710
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	139
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	518, 530
BfmI	CTRYAG	2 cut(s)	84, 501
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	5 cut(s)	498, 501, 666, 669, 699
BlsI	GCNGC	5 cut(s)	499, 502, 667, 670, 700
Bme1390I	CCNGG	2 cut(s)	139, 362
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	2 cut(s)	139, 362
BmsI	GCATC	2 cut(s)	241, 669
BpmI	CTGGAG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	137, 138
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 307, 649, 850
Bse1I	ACTGG	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	2 cut(s)	639, 684
BseLI	CCNNNNNNNGG	4 cut(s)	56, 307, 649, 850
BseMII	CTCAG	2 cut(s)	138, 181
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	3 cut(s)	487, 680, 710
Bsh1236I	CGCG	2 cut(s)	497, 846
BshFI	GGCC	1 cut(s)	422
BshNI	GGYRCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	4 cut(s)	56, 307, 649, 850
BsmAI	GTCTC	2 cut(s)	518, 530
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	1 cut(s)	422
Bsp143I	GATC	3 cut(s)	130, 216, 334
BspACI	CCGC	3 cut(s)	497, 665, 844
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	2 cut(s)	139, 180
BspFNI	CGCG	2 cut(s)	497, 846
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	2 cut(s)	88, 505
BspPI	GGATC	2 cut(s)	224, 329
BspT107I	GGYRCC	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	3 cut(s)	130, 216, 334
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	5 cut(s)	259, 331, 392, 675, 729
Bst6I	CTCTTC	2 cut(s)	345, 516
BstDEI	CTNAG	2 cut(s)	147, 167
BstF5I	GGATG	2 cut(s)	639, 684
BstFNI	CGCG	2 cut(s)	497, 846
BstKTI	GATC	3 cut(s)	133, 219, 337
BstMAI	GTCTC	2 cut(s)	518, 530
BstMBI	GATC	3 cut(s)	130, 216, 334
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	137, 360
BstSFI	CTRYAG	2 cut(s)	84, 501
BstUI	CGCG	2 cut(s)	497, 846
BstV1I	GCAGC	3 cut(s)	487, 680, 710
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	639, 684
BtsIMutI	CAGTG	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	3 cut(s)	77, 277, 832
CviAII	CATG	3 cut(s)	284, 616, 776
CviJI	RGCY	7 cut(s)	49, 422, 429, 500, 573, 701, 825
CviKI_1	RGCY	7 cut(s)	49, 422, 429, 500, 573, 701, 825
CviQI	GTAC	3 cut(s)	77, 277, 832
DdeI	CTNAG	2 cut(s)	147, 167
DpnI	GATC	3 cut(s)	132, 218, 336
DpnII	GATC	3 cut(s)	130, 216, 334
Eam1104I	CTCTTC	2 cut(s)	345, 516
EarI	CTCTTC	2 cut(s)	345, 516
Eco47I	GGWCC	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	287, 619, 779
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 569, 601
FatI	CATG	3 cut(s)	283, 615, 775
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	5 cut(s)	498, 501, 666, 669, 699
FokI	GGATG	2 cut(s)	626, 691
Fsp4HI	GCNGC	5 cut(s)	498, 501, 666, 669, 699
GluI	GCNGC	5 cut(s)	498, 501, 666, 669, 699
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	3 cut(s)	287, 619, 779
HinfI	GANTC	3 cut(s)	60, 70, 143
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	2 cut(s)	140, 494
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	148, 170, 437, 598
Hpy188III	TCNNGA	4 cut(s)	31, 238, 416, 643
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	4 cut(s)	118, 199, 260, 473
HpyCH4III	ACNGT	5 cut(s)	259, 331, 392, 675, 729
HpyCH4V	TGCA	5 cut(s)	86, 313, 503, 615, 698
HpyF3I	CTNAG	2 cut(s)	147, 167
Hsp92II	CATG	3 cut(s)	287, 619, 779
KpnI	GGTACC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	130, 216, 334
Lsp1109I	GCAGC	3 cut(s)	487, 680, 710
LweI	GCATC	2 cut(s)	241, 669
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	3 cut(s)	132, 218, 336
MboI	GATC	3 cut(s)	130, 216, 334
MboII	GAAGA	4 cut(s)	65, 214, 332, 533
MluCI	AATT	4 cut(s)	119, 221, 531, 761
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	9 cut(s)	85, 142, 348, 354, 394, 412, 478, 682, 820
MseI	TTAA	3 cut(s)	261, 620, 755
MslI	CAYNNNNRTG	1 cut(s)	748
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	2 cut(s)	139, 362
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	2 cut(s)	497, 846
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	130, 216, 334
NlaIII	CATG	3 cut(s)	287, 619, 779
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	619
PasI	CCCWGGG	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PctI	GAATGC	1 cut(s)	581
PfeI	GAWTC	2 cut(s)	70, 143
PkrI	GCNGC	5 cut(s)	499, 502, 667, 670, 700
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	772
PstI	CTGCAG	2 cut(s)	88, 505
RsaI	GTAC	3 cut(s)	78, 278, 833
RsaNI	GTAC	3 cut(s)	77, 277, 832
RseI	CAYNNNNRTG	1 cut(s)	748
SaqAI	TTAA	3 cut(s)	261, 620, 755
SatI	GCNGC	5 cut(s)	498, 501, 666, 669, 699
Sau3AI	GATC	3 cut(s)	130, 216, 334
Sau96I	GGNCC	1 cut(s)	772
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	139, 362
SfaNI	GCATC	2 cut(s)	241, 669
SfcI	CTRYAG	2 cut(s)	84, 501
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	748
Sse9I	AATT	4 cut(s)	119, 221, 531, 761
SsiI	CCGC	3 cut(s)	497, 665, 844
StyD4I	CCNGG	2 cut(s)	137, 360
TaaI	ACNGT	5 cut(s)	259, 331, 392, 675, 729
TaqI	TCGA	3 cut(s)	30, 63, 239
TasI	AATT	4 cut(s)	119, 221, 531, 761
TatI	WGTACW	1 cut(s)	831
TauI	GCSGC	2 cut(s)	500, 668
TfiI	GAWTC	2 cut(s)	70, 143
Tru1I	TTAA	3 cut(s)	261, 620, 755
Tru9I	TTAA	3 cut(s)	261, 620, 755
TscAI	CASTG	1 cut(s)	680
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	3 cut(s)	500, 668, 698
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	9, 492
TspRI	CASTG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	772
XceI	RCATGY	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.