Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Reverse (-)

9844475 .. 9848164

Gene Structure 3690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1127900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTGATGCAGAAGTTGAGAGCCACCACCAAGCTTTTGCCATATCTTTCTTCTGCAGACAAAGGTTCTTCTGCGTCTTCTGTTGTTGCTCATCATCATTCTTTAACAAAAAGGCCTTGCTTTGGAACTCTTTCACCTTCTTCACCATCCTTGCCTGGCTTTCACAAAGATTCAAAAGATAAAGTTCCACACTTGATTCAAGCCATGTCGGTTTCAACGAATTCATCCTCCGTTGCACAACAAGCTGTGCCTGAAAATGAAGTCGAACAGGTTGAGTTGCTTGCTGCAGTTGATAATTCATATGGAGGAGTTGTTGTGGACGTGACCGAACCTATGGATTCTGCGGTTTTCACTTCCTTGCTTCAGGCTTCCATATCGCAATGGAGGCAAAAGGGGAAGAAGGGCGTTTGGATCAAATTGCCTATCGAACGGTCAAATCTTGTTGATGCCGCAGTTAAGGAAGGATTTAGGTACCACCATGCTGAATCAGATTACTTAATGCTTGTACGTTGGATTCCCGAAACTGATGATAGACTCCCTGCAAATGCTTCGCACAGAGTGGGCATTGGCGCTTTTGTCATGAACGGTAACAGAGAGGTGCTTGTGGTTCAGGAGTTAAGTGGCAGATTCAGCAATACAGATGTGTGGAAGATGCCAACTGGGGTTGTCAATGAAGGTGAGGATATCTGCAAAGCTGCTGTTAGAGAGGTTAAAGAAGAGACAGGAATTGATACAGAGTTCGTGGAGGTTTTAGCATTTAGGCAAAGCCACAAGTCATTCTTTCAAAAGTCAGATTTGTTCATTGTTTGCATGTTGACCCCAACATCGTTCGACATCCAATTGCAGAACTTGGAGGTTAAGGCAGCCCAGTGGATGCCATATGCGGACTACGCAGCTCAACCCTTTGTTAAGGAAAACAAACTCTTTGACAATATAGCAAAAATATGCTTGGCAAAATCGGACAGGGACTATGTCGGTTTTACTGCGCTGGCTACAACTACATCCTCTGGAAAAAGTTGCCACCTGTACTATAACAGCCGGGATATGGGAAACCTACTGGCTACCGGTGATCCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

360

Amino Acids

39.67

Weight (kDa)

6.22

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	94 - 172	5.7e-31	Nudix hydrolase domain
NUDIX	PF00293	185 - 305	1.1e-21	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	471
AciI	CCGC	3 cut(s)	344, 450, 884
AclWI	GGATC	2 cut(s)	419, 1064
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	559
AfaI	GTAC	3 cut(s)	473, 507, 1028
AfiI	CCNNNNNNNGG	2 cut(s)	122, 1045
AgeI	ACCGGT	1 cut(s)	1064
AgsI	TTSAA	4 cut(s)	174, 200, 216, 785
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	4 cut(s)	34, 245, 695, 896
AluI	AGCT	4 cut(s)	34, 245, 695, 896
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	2 cut(s)	419, 1064
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	284, 695, 863, 893
ApoI	RAATTY	1 cut(s)	220
AsiGI	ACCGGT	1 cut(s)	1064
Asp700I	GAANNNNTTC	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	572, 988
AsuC2I	CCSGG	1 cut(s)	1040
AsuHPI	GGTGA	4 cut(s)	126, 135, 689, 1079
BanI	GGYRCC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	271, 682, 875, 905
BccI	CCATC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BciT130I	CCWGG	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	1040
BcoDI	GTCTC	1 cut(s)	713
BfmI	CTRYAG	2 cut(s)	54, 285
BfoI	RGCGCY	1 cut(s)	573
BisI	GCNGC	5 cut(s)	285, 450, 696, 864, 894
BlsI	GCNGC	5 cut(s)	286, 451, 697, 865, 895
Bme1390I	CCNGG	2 cut(s)	156, 1040
BmgBI	CACGTC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	2 cut(s)	156, 1040
BmrI	ACTGGG	2 cut(s)	669, 862
BmsI	GCATC	3 cut(s)	436, 642, 864
BmuI	ACTGGG	2 cut(s)	669, 862
BpiI	GAAGAC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	1040
BsaWI	WCCGGW	1 cut(s)	1064
BsaXI	ACNNNNNCTCC	4 cut(s)	297, 300, 327, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 1045
Bse118I	RCCGGY	1 cut(s)	1064
Bse1I	ACTGG	3 cut(s)	664, 868, 1062
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	5 cut(s)	146, 224, 834, 879, 1001
BseLI	CCNNNNNNNGG	2 cut(s)	122, 1045
BseMI	GCAATG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	664, 868, 1062
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	4 cut(s)	271, 682, 875, 905
BshFI	GGCC	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	471
BshTI	ACCGGT	1 cut(s)	1064
BsiSI	CCGG	2 cut(s)	1039, 1065
BslFI	GGGAC	1 cut(s)	980
BslI	CCNNNNNNNGG	2 cut(s)	122, 1045
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	980
BsnI	GGCC	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	411, 1069
BspACI	CCGC	3 cut(s)	344, 450, 884
BspANI	GGCC	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	2 cut(s)	58, 289
BspPI	GGATC	2 cut(s)	419, 1064
BspT107I	GGYRCC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	1064
BsrI	ACTGG	3 cut(s)	664, 868, 1062
BssAI	RCCGGY	1 cut(s)	1064
BssMI	GATC	2 cut(s)	411, 1069
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	432, 587
Bst6I	CTCTTC	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	282, 990
BstDEI	CTNAG	1 cut(s)	1074
BstF5I	GGATG	5 cut(s)	146, 224, 834, 879, 1001
BstH2I	RGCGCY	1 cut(s)	573
BstHHI	GCGC	2 cut(s)	572, 988
BstKTI	GATC	2 cut(s)	414, 1072
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	2 cut(s)	411, 1069
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 385, 630, 890
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	2 cut(s)	154, 1038
BstSFI	CTRYAG	2 cut(s)	54, 285
BstV1I	GCAGC	4 cut(s)	271, 682, 875, 905
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	5 cut(s)	146, 224, 834, 879, 1001
BtsIMutI	CAGTG	1 cut(s)	875
Cac8I	GCNNGC	2 cut(s)	282, 990
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	2 cut(s)	572, 988
Cfr10I	RCCGGY	1 cut(s)	1064
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	472, 506, 1027
CspAI	ACCGGT	1 cut(s)	1064
CviAII	CATG	4 cut(s)	205, 479, 580, 811
CviQI	GTAC	3 cut(s)	472, 506, 1027
DdeI	CTNAG	1 cut(s)	1074
DpnI	GATC	2 cut(s)	413, 1071
DpnII	GATC	2 cut(s)	411, 1069
DraIII	CACNNNGTG	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Eco147I	AGGCCT	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	685
FaeI	CATG	4 cut(s)	208, 482, 583, 814
FalI	AAGNNNNNCTT	2 cut(s)	764, 796
FaqI	GGGAC	1 cut(s)	980
FatI	CATG	4 cut(s)	204, 478, 579, 810
FauNDI	CATATG	2 cut(s)	301, 880
Fnu4HI	GCNGC	5 cut(s)	285, 450, 696, 864, 894
FokI	GGATG	5 cut(s)	133, 211, 821, 886, 988
Fsp4HI	GCNGC	5 cut(s)	285, 450, 696, 864, 894
GlaI	GCGC	2 cut(s)	571, 987
GluI	GCNGC	5 cut(s)	285, 450, 696, 864, 894
HaeII	RGCGCY	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	2 cut(s)	1039, 1065
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	2 cut(s)	572, 988
Hin1II	CATG	4 cut(s)	208, 482, 583, 814
Hin6I	GCGC	2 cut(s)	570, 986
HinP1I	GCGC	2 cut(s)	570, 986
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	7 cut(s)	170, 196, 338, 485, 514, 534, 627
HpaII	CCGG	2 cut(s)	1039, 1065
HphI	GGTGA	4 cut(s)	126, 135, 689, 1079
Hpy166II	GTNNAC	2 cut(s)	319, 816
Hpy188I	TCNGA	3 cut(s)	490, 793, 961
Hpy188III	TCNNGA	4 cut(s)	518, 580, 611, 1008
Hpy8I	GTNNAC	2 cut(s)	319, 816
HpyAV	CCTTC	4 cut(s)	147, 394, 455, 668
HpyCH4III	ACNGT	2 cut(s)	432, 587
HpyCH4IV	ACGT	2 cut(s)	321, 508
HpyCH4V	TGCA	8 cut(s)	10, 56, 236, 287, 542, 690, 810, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 385, 630, 890
HpyF3I	CTNAG	1 cut(s)	1074
HpySE526I	ACGT	2 cut(s)	321, 508
Hsp92II	CATG	4 cut(s)	208, 482, 583, 814
HspAI	GCGC	2 cut(s)	570, 986
KpnI	GGTACC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	411, 1069
Lsp1109I	GCAGC	4 cut(s)	271, 682, 875, 905
LweI	GCATC	3 cut(s)	436, 642, 864
MaeII	ACGT	2 cut(s)	321, 508
MaeIII	GTNAC	2 cut(s)	322, 587
MalI	GATC	2 cut(s)	413, 1071
MboI	GATC	2 cut(s)	411, 1069
MboII	GAAGA	7 cut(s)	42, 60, 69, 132, 409, 661, 728
MfeI	CAATTG	1 cut(s)	839
MluCI	AATT	5 cut(s)	220, 295, 416, 726, 839
MlyI	GAGTC	1 cut(s)	528
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	9 cut(s)	238, 299, 378, 589, 673, 700, 739, 847, 1015
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	7 cut(s)	104, 456, 497, 617, 711, 858, 909
MspI	CCGG	2 cut(s)	1039, 1065
MspR9I	CCNGG	2 cut(s)	156, 1040
MunI	CAATTG	1 cut(s)	839
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	242, 385, 630, 890
NciI	CCSGG	1 cut(s)	1040
NdeI	CATATG	2 cut(s)	301, 880
NdeII	GATC	2 cut(s)	411, 1069
NlaIII	CATG	4 cut(s)	208, 482, 583, 814
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	814
PagI	TCATGA	1 cut(s)	579
PceI	AGGCCT	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	6 cut(s)	170, 196, 338, 485, 514, 627
PflFI	GACNNNGTC	1 cut(s)	971
PinAI	ACCGGT	1 cut(s)	1064
PkrI	GCNGC	5 cut(s)	286, 451, 697, 865, 895
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	473
PstI	CTGCAG	2 cut(s)	58, 289
PsyI	GACNNNGTC	1 cut(s)	971
RsaI	GTAC	3 cut(s)	473, 507, 1028
RsaNI	GTAC	3 cut(s)	472, 506, 1027
SaqAI	TTAA	7 cut(s)	104, 456, 497, 617, 711, 858, 909
SatI	GCNGC	5 cut(s)	285, 450, 696, 864, 894
Sau3AI	GATC	2 cut(s)	411, 1069
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	2 cut(s)	156, 1040
SfaNI	GCATC	3 cut(s)	436, 642, 864
SfcI	CTRYAG	2 cut(s)	54, 285
Sse9I	AATT	5 cut(s)	220, 295, 416, 726, 839
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	3 cut(s)	344, 450, 884
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	154, 1038
TaaI	ACNGT	2 cut(s)	432, 587
TaiI	ACGT	2 cut(s)	324, 511
TaqI	TCGA	3 cut(s)	264, 426, 831
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	5 cut(s)	220, 295, 416, 726, 839
TatI	WGTACW	1 cut(s)	1026
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	6 cut(s)	170, 196, 338, 485, 514, 627
Tru1I	TTAA	7 cut(s)	104, 456, 497, 617, 711, 858, 909
Tru9I	TTAA	7 cut(s)	104, 456, 497, 617, 711, 858, 909
TscAI	CASTG	1 cut(s)	875
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	4 cut(s)	284, 695, 863, 893
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	6 cut(s)	213, 273, 288, 596, 687, 790
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	875
Tth111I	GACNNNGTC	1 cut(s)	971
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.