zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14225 |
| fragaria_vesca | FvH4_7g11860 FvH4_7g28230 FvH4_7g28250 |
| malus_domestica | MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1 |
| prunus_persica | Prupe.2G145200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841 |
| rosa_laevigata | RLG00000026168 RLG00000026679 RLG00000028477 |
| rosa_multiflora | Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00282940 Rroxscaffold_4G00304760 |
| rosa_rugosa | Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100 |
| rosa_samantha | Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100 |
| rosa_wichuraiana | Rw1G019570 Rw1G035490 Rw1G041120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 306 |
| AatII | GACGTC | 1 cut(s) | 327 |
| AccII | CGCG | 1 cut(s) | 263 |
| AciI | CCGC | 3 cut(s) | 147, 195, 315 |
| AcoI | YGGCCR | 2 cut(s) | 120, 247 |
| AcuI | CTGAAG | 3 cut(s) | 28, 171, 352 |
| AcyI | GRCGYC | 1 cut(s) | 324 |
| AfaI | GTAC | 1 cut(s) | 180 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 277 |
| AgsI | TTSAA | 1 cut(s) | 130 |
| AjiI | CACGTC | 1 cut(s) | 51 |
| AluBI | AGCT | 1 cut(s) | 364 |
| AluI | AGCT | 1 cut(s) | 364 |
| Alw26I | GTCTC | 1 cut(s) | 270 |
| AoxI | GGCC | 2 cut(s) | 120, 247 |
| AspLEI | GCGC | 1 cut(s) | 166 |
| AsuC2I | CCSGG | 1 cut(s) | 278 |
| AsuHPI | GGTGA | 2 cut(s) | 260, 368 |
| BalI | TGGCCA | 2 cut(s) | 122, 249 |
| BccI | CCATC | 1 cut(s) | 304 |
| BceAI | ACGGC | 1 cut(s) | 177 |
| BcnI | CCSGG | 1 cut(s) | 278 |
| BcoDI | GTCTC | 1 cut(s) | 270 |
| BfaI | CTAG | 1 cut(s) | 227 |
| BfmI | CTRYAG | 1 cut(s) | 238 |
| BisI | GCNGC | 2 cut(s) | 147, 315 |
| BlsI | GCNGC | 2 cut(s) | 148, 316 |
| Bme1390I | CCNGG | 1 cut(s) | 278 |
| BmgBI | CACGTC | 1 cut(s) | 51 |
| BmrFI | CCNGG | 1 cut(s) | 278 |
| BpuMI | CCSGG | 1 cut(s) | 278 |
| BsaHI | GRCGYC | 1 cut(s) | 324 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 277 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 277 |
| Bsh1236I | CGCG | 1 cut(s) | 263 |
| BshFI | GGCC | 2 cut(s) | 122, 249 |
| BsiSI | CCGG | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BsmAI | GTCTC | 1 cut(s) | 270 |
| BsmBI | CGTCTC | 1 cut(s) | 270 |
| BsmI | GAATGC | 1 cut(s) | 286 |
| BsnI | GGCC | 2 cut(s) | 122, 249 |
| BspACI | CCGC | 3 cut(s) | 147, 195, 315 |
| BspANI | GGCC | 2 cut(s) | 122, 249 |
| BspFNI | CGCG | 1 cut(s) | 263 |
| BspQI | GCTCTTC | 2 cut(s) | 276, 371 |
| BssNI | GRCGYC | 1 cut(s) | 324 |
| Bst4CI | ACNGT | 3 cut(s) | 178, 239, 272 |
| Bst6I | CTCTTC | 3 cut(s) | 147, 276, 371 |
| BstACI | GRCGYC | 1 cut(s) | 324 |
| BstC8I | GCNNGC | 1 cut(s) | 205 |
| BstDEI | CTNAG | 2 cut(s) | 75, 328 |
| BstFNI | CGCG | 1 cut(s) | 263 |
| BstHHI | GCGC | 1 cut(s) | 166 |
| BstMAI | GTCTC | 1 cut(s) | 270 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 45, 170 |
| BstSCI | CCNGG | 1 cut(s) | 276 |
| BstSFI | CTRYAG | 1 cut(s) | 238 |
| BstUI | CGCG | 1 cut(s) | 263 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 118 |
| BsuRI | GGCC | 2 cut(s) | 122, 249 |
| BtrI | CACGTC | 1 cut(s) | 51 |
| BtsIMutI | CAGTG | 1 cut(s) | 235 |
| Cac8I | GCNNGC | 1 cut(s) | 205 |
| CfoI | GCGC | 1 cut(s) | 166 |
| CseI | GACGC | 1 cut(s) | 252 |
| Csp6I | GTAC | 1 cut(s) | 179 |
| CviAII | CATG | 1 cut(s) | 291 |
| CviJI | RGCY | 5 cut(s) | 39, 122, 146, 249, 364 |
| CviKI_1 | RGCY | 5 cut(s) | 39, 122, 146, 249, 364 |
| CviQI | GTAC | 1 cut(s) | 179 |
| DdeI | CTNAG | 2 cut(s) | 75, 328 |
| EaeI | YGGCCR | 2 cut(s) | 120, 247 |
| Eam1104I | CTCTTC | 3 cut(s) | 147, 276, 371 |
| EarI | CTCTTC | 3 cut(s) | 147, 276, 371 |
| Eco57I | CTGAAG | 3 cut(s) | 28, 171, 352 |
| EcoT22I | ATGCAT | 1 cut(s) | 26 |
| Esp3I | CGTCTC | 1 cut(s) | 270 |
| FaeI | CATG | 1 cut(s) | 294 |
| FaiI | YATR | 3 cut(s) | 22, 292, 306 |
| FatI | CATG | 1 cut(s) | 290 |
| Fnu4HI | GCNGC | 2 cut(s) | 147, 315 |
| Fsp4HI | GCNGC | 2 cut(s) | 147, 315 |
| FspBI | CTAG | 1 cut(s) | 227 |
| GlaI | GCGC | 1 cut(s) | 165 |
| GluI | GCNGC | 2 cut(s) | 147, 315 |
| HaeIII | GGCC | 2 cut(s) | 122, 249 |
| HapII | CCGG | 1 cut(s) | 278 |
| HgaI | GACGC | 1 cut(s) | 252 |
| HhaI | GCGC | 1 cut(s) | 166 |
| Hin1I | GRCGYC | 1 cut(s) | 324 |
| Hin1II | CATG | 1 cut(s) | 294 |
| Hin6I | GCGC | 1 cut(s) | 164 |
| HinP1I | GCGC | 1 cut(s) | 164 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HpaII | CCGG | 1 cut(s) | 278 |
| HphI | GGTGA | 2 cut(s) | 260, 368 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188I | TCNGA | 2 cut(s) | 301, 371 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| Hpy99I | CGWCG | 1 cut(s) | 178 |
| HpyAV | CCTTC | 2 cut(s) | 24, 208 |
| HpyCH4III | ACNGT | 3 cut(s) | 178, 239, 272 |
| HpyCH4IV | ACGT | 3 cut(s) | 50, 132, 324 |
| HpyCH4V | TGCA | 2 cut(s) | 24, 207 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 45, 170 |
| HpyF3I | CTNAG | 2 cut(s) | 75, 328 |
| HpySE526I | ACGT | 3 cut(s) | 50, 132, 324 |
| Hsp92I | GRCGYC | 1 cut(s) | 324 |
| Hsp92II | CATG | 1 cut(s) | 294 |
| HspAI | GCGC | 1 cut(s) | 164 |
| LguI | GCTCTTC | 2 cut(s) | 276, 371 |
| LpnPI | CCDG | 3 cut(s) | 124, 291, 357 |
| MaeI | CTAG | 1 cut(s) | 227 |
| MaeII | ACGT | 3 cut(s) | 50, 132, 324 |
| MaeIII | GTNAC | 3 cut(s) | 51, 157, 272 |
| MboII | GAAGA | 7 cut(s) | 34, 73, 164, 223, 250, 293, 358 |
| MlsI | TGGCCA | 2 cut(s) | 122, 249 |
| MluNI | TGGCCA | 2 cut(s) | 122, 249 |
| MlyI | GAGTC | 1 cut(s) | 113 |
| MnlI | CCTC | 3 cut(s) | 77, 148, 163 |
| Mox20I | TGGCCA | 2 cut(s) | 122, 249 |
| Mph1103I | ATGCAT | 1 cut(s) | 26 |
| MscI | TGGCCA | 2 cut(s) | 122, 249 |
| MseI | TTAA | 1 cut(s) | 95 |
| Msp20I | TGGCCA | 2 cut(s) | 122, 249 |
| MspA1I | CMGCKG | 1 cut(s) | 149 |
| MspI | CCGG | 1 cut(s) | 278 |
| MspR9I | CCNGG | 1 cut(s) | 278 |
| Mva1269I | GAATGC | 1 cut(s) | 286 |
| MvnI | CGCG | 1 cut(s) | 263 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 45, 170 |
| NciI | CCSGG | 1 cut(s) | 278 |
| NlaIII | CATG | 1 cut(s) | 294 |
| NmuCI | GTSAC | 2 cut(s) | 51, 157 |
| NsiI | ATGCAT | 1 cut(s) | 26 |
| PciSI | GCTCTTC | 2 cut(s) | 276, 371 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 56 |
| PctI | GAATGC | 1 cut(s) | 286 |
| PkrI | GCNGC | 2 cut(s) | 148, 316 |
| PleI | GAGTC | 1 cut(s) | 112 |
| PpsI | GAGTC | 1 cut(s) | 112 |
| PsiI | TTATAA | 1 cut(s) | 306 |
| RsaI | GTAC | 1 cut(s) | 180 |
| RsaNI | GTAC | 1 cut(s) | 179 |
| SapI | GCTCTTC | 2 cut(s) | 276, 371 |
| SaqAI | TTAA | 1 cut(s) | 95 |
| SatI | GCNGC | 2 cut(s) | 147, 315 |
| SchI | GAGTC | 1 cut(s) | 113 |
| ScrFI | CCNGG | 1 cut(s) | 278 |
| SetI | ASST | 8 cut(s) | 16, 53, 69, 135, 159, 219, 327, 366 |
| SfcI | CTRYAG | 1 cut(s) | 238 |
| SsiI | CCGC | 3 cut(s) | 147, 195, 315 |
| SspMI | CTAG | 1 cut(s) | 227 |
| StyD4I | CCNGG | 1 cut(s) | 276 |
| TaaI | ACNGT | 3 cut(s) | 178, 239, 272 |
| TaiI | ACGT | 3 cut(s) | 53, 135, 327 |
| TauI | GCSGC | 2 cut(s) | 149, 317 |
| Tru1I | TTAA | 1 cut(s) | 95 |
| Tru9I | TTAA | 1 cut(s) | 95 |
| TscAI | CASTG | 1 cut(s) | 242 |
| TseFI | GTSAC | 2 cut(s) | 51, 157 |
| Tsp45I | GTSAC | 2 cut(s) | 51, 157 |
| TspDTI | ATGAA | 1 cut(s) | 279 |
| TspRI | CASTG | 1 cut(s) | 242 |
| XspI | CTAG | 1 cut(s) | 227 |
| ZraI | GACGTC | 1 cut(s) | 325 |
| Zsp2I | ATGCAT | 1 cut(s) | 26 |