Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017237.1

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

33593 .. 34033

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017237.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggactgtccccctccactctgtgcaagaggttgcggtttctttgggactttggcaaacaagaatatgtgctcaaagtgctacactgattatctgaaagaacagcttcttgctaagcctactgcagagccggccgtggtggtgccttcagtggagaaaaacctagacgtcgctgtttctgctagcgagtcgtcgtcaaccactacaactagtgatcagccatgtggtgtgacaaagaattggtgccagagctatagctgcaagaagaaacttggtccagtgcaagtggcgttaaaatgccgctgtggtggagtgttttgtccagagcacaggttagctgaaaagcactcatgtagtgtggattacaagaggcctggaggagagctcttggccaagcaaaacccagtttgcaagggtgacaagttaaagcagagggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

146

Amino Acids

15.79

Weight (kDa)

8.88

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccB1I	GGYRCC	2 cut(s)	142, 243
AciI	CCGC	2 cut(s)	36, 301
AcoI	YGGCCR	2 cut(s)	132, 390
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	23
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	5 cut(s)	106, 252, 258, 338, 385
AluI	AGCT	5 cut(s)	106, 252, 258, 338, 385
Alw21I	GWGCWC	3 cut(s)	74, 330, 387
AoxI	GGCC	3 cut(s)	132, 371, 390
ApeKI	GCWGC	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	2 cut(s)	142, 243
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	3 cut(s)	74, 330, 387
BbvI	GCAGC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	214
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	3 cut(s)	164, 183, 210
BfmI	CTRYAG	2 cut(s)	123, 253
BisI	GCNGC	2 cut(s)	259, 301
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	2 cut(s)	260, 302
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	144, 245
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	398
BmtI	GCTAGC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	369, 401
BpmI	CTGGAG	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	135
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	278, 404
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	278, 404
BseRI	GAGGAG	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	134, 373, 392
BshNI	GGYRCC	2 cut(s)	142, 243
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	3 cut(s)	74, 330, 387
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	3 cut(s)	134, 373, 392
Bsp1286I	GDGCHC	3 cut(s)	74, 330, 387
Bsp143I	GATC	1 cut(s)	214
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	2 cut(s)	36, 301
BspANI	GGCC	3 cut(s)	134, 373, 392
BspLI	GGNNCC	2 cut(s)	144, 245
BspMAI	CTGCAG	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	186
BspT107I	GGYRCC	2 cut(s)	142, 243
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	278, 404
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	132, 184
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 131, 179, 258
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	2 cut(s)	123, 253
BstV1I	GCAGC	1 cut(s)	245
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	134, 373, 392
BtgI	CCRYGG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	84, 156, 285
Cac8I	GCNNGC	2 cut(s)	132, 184
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	2 cut(s)	222, 351
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	23
EaeI	YGGCCR	2 cut(s)	132, 390
EagI	CGGCCG	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	385
EclXI	CGGCCG	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	275
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	2 cut(s)	225, 354
FaiI	YATR	4 cut(s)	68, 223, 255, 352
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	221, 350
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	259, 301
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	259, 301
FspBI	CTAG	3 cut(s)	164, 183, 210
GluI	GCNGC	2 cut(s)	259, 301
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	134, 373, 392
HapII	CCGG	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	225, 354
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	2 cut(s)	173, 196
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	5 cut(s)	26, 125, 261, 283, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 131, 179, 258
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	225, 354
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	144, 260, 291, 316, 336, 360, 387, 417
Lsp1109I	GCAGC	1 cut(s)	245
MaeI	CTAG	3 cut(s)	164, 183, 210
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	229, 416
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	277
MhlI	GDGCHC	3 cut(s)	74, 330, 387
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	1 cut(s)	238
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	5 cut(s)	23, 24, 363, 371, 426
Mox20I	TGGCCA	1 cut(s)	392
MroNI	GCCGGC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	2 cut(s)	293, 425
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	78, 131, 179, 258
NaeI	GCCGGC	1 cut(s)	132
NdeII	GATC	1 cut(s)	214
NgoMIV	GCCGGC	1 cut(s)	130
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	225, 354
NlaIV	GGNNCC	2 cut(s)	144, 245
NmuCI	GTSAC	2 cut(s)	229, 416
PceI	AGGCCT	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	260, 302
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	144, 245
PspPI	GGNCC	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	293, 425
SatI	GCNGC	2 cut(s)	259, 301
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	3 cut(s)	74, 330, 387
SetI	ASST	9 cut(s)	34, 108, 165, 171, 254, 260, 335, 340, 387
SfcI	CTRYAG	2 cut(s)	123, 253
SinI	GGWCC	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	1 cut(s)	238
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	2 cut(s)	36, 301
SspMI	CTAG	3 cut(s)	164, 183, 210
SstI	GAGCTC	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	171
TasI	AATT	1 cut(s)	238
TauI	GCSGC	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	293, 425
Tru9I	TTAA	2 cut(s)	293, 425
TscAI	CASTG	3 cut(s)	91, 156, 285
TseFI	GTSAC	2 cut(s)	229, 416
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	2 cut(s)	229, 416
TspRI	CASTG	3 cut(s)	91, 156, 285
VpaK11BI	GGWCC	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	3 cut(s)	164, 183, 210
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.