Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Forward (+)

209194 .. 213264

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggagtctccaagcaacatggactgtccccctccactctgcgcaaatggttgcggtttctttgggacttcggcaaacaagaatatgtgctcaaagtgctacacggagtatctgaaagaaaagcttcttgctaagcctactgcagcgcgggctgtggtggtggcttcggtggagaaaaccctagacgtcgctgtttctgctagcgagtcgtcttcaagtactgcaactaatgatcagcgcccttgtggtgtgacaaagaataggtgccagagctgcgattgcaacaagaaacttaagccggtgcaaatgacgttaaagtgccgccgtggtggagtgttttgtgcagagcataggttggctgaatcccacacatgtagtgtgaattacaagaaggctggacaagagcttttgaccaagcaaaacccagttggcaagggtgacaaatatttcacattaggtaatggcaaacaaggcacccaaaatcagtgtcgggcggaaattttgatggagcaaaaaggcggagaattgaatgatgggattcttgaacagcgttcgcttctcacgcgctttttggtggttgattgtgagtctcaatttgcatttcattgtggggttttgaaggtgcatggtgttcttccccaattgctgctgcattggagccctcgagttttgaacgcagccaagatcaggaggtgtgataatcaagctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

237

Amino Acids

25.89

Weight (kDa)

8.99

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
Acc16I	TGCGCA	1 cut(s)	43
AccB1I	GGYRCC	2 cut(s)	264, 473
AccII	CGCG	2 cut(s)	148, 565
AciI	CCGC	5 cut(s)	54, 148, 322, 494, 519
AcsI	RAATTY	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	687
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	216, 529, 545, 619, 673
AluBI	AGCT	4 cut(s)	124, 273, 406, 707
AluI	AGCT	4 cut(s)	124, 273, 406, 707
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	12, 594
Ama87I	CYCGRG	1 cut(s)	663
ApeKI	GCWGC	6 cut(s)	143, 273, 646, 649, 677, 707
ApoI	RAATTY	1 cut(s)	498
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	4 cut(s)	44, 148, 240, 567
AsuHPI	GGTGA	1 cut(s)	449
AsuNHI	GCTAGC	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	663
BanI	GGYRCC	2 cut(s)	264, 473
BanII	GRGCYC	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	6 cut(s)	155, 260, 633, 636, 689, 694
BccI	CCATC	2 cut(s)	499, 527
BceAI	ACGGC	1 cut(s)	309
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	12, 594
BfaI	CTAG	2 cut(s)	182, 201
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	241
BfrI	CTTAAG	1 cut(s)	293
BisI	GCNGC	7 cut(s)	144, 274, 322, 647, 650, 678, 708
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	7 cut(s)	145, 275, 323, 648, 651, 679, 709
BmcAI	AGTACT	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	663
BmiI	GGNNCC	3 cut(s)	266, 475, 659
BmrI	ACTGGG	1 cut(s)	419
BmtI	GCTAGC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	687
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	687
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	6 cut(s)	155, 260, 633, 636, 689, 694
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	2 cut(s)	148, 565
BshNI	GGYRCC	2 cut(s)	264, 473
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	12, 79
BslI	CCNNNNNNNGG	1 cut(s)	687
BsmAI	GTCTC	2 cut(s)	12, 594
BsmFI	GGGAC	2 cut(s)	12, 79
BsoBI	CYCGRG	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	92, 662
Bsp143I	GATC	2 cut(s)	232, 684
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	5 cut(s)	54, 148, 322, 494, 519
BspFNI	CGCG	2 cut(s)	148, 565
BspLI	GGNNCC	3 cut(s)	266, 475, 659
BspMAI	CTGCAG	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	204
BspT107I	GGYRCC	2 cut(s)	264, 473
BspTI	CTTAAG	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	2 cut(s)	232, 684
BssNI	GRCGYC	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	150, 202
BstDEI	CTNAG	2 cut(s)	132, 711
BstDSI	CCRYGG	1 cut(s)	325
BstFNI	CGCG	2 cut(s)	148, 565
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	4 cut(s)	44, 148, 240, 567
BstKTI	GATC	2 cut(s)	235, 687
BstMAI	GTCTC	2 cut(s)	12, 594
BstMBI	GATC	2 cut(s)	232, 684
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 149, 197, 273, 279, 471, 562
BstNSI	RCATGY	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	2 cut(s)	148, 565
BstV1I	GCAGC	6 cut(s)	155, 260, 633, 636, 689, 694
BstV2I	GAAGAC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	150, 202
CfoI	GCGC	4 cut(s)	44, 148, 240, 567
Cfr10I	RCCGGY	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	3 cut(s)	19, 372, 626
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	132, 711
DpnI	GATC	2 cut(s)	234, 686
DpnII	GATC	2 cut(s)	232, 684
EciI	GGCGGA	2 cut(s)	509, 534
Eco24I	GRGCYC	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	662
FaeI	CATG	3 cut(s)	22, 375, 629
FaiI	YATR	5 cut(s)	20, 86, 351, 373, 627
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	2 cut(s)	12, 79
FatI	CATG	3 cut(s)	18, 371, 625
FauI	CCCGC	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	7 cut(s)	144, 274, 322, 647, 650, 678, 708
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	7 cut(s)	144, 274, 322, 647, 650, 678, 708
FspBI	CTAG	2 cut(s)	182, 201
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	4 cut(s)	43, 147, 239, 566
GluI	GCNGC	7 cut(s)	144, 274, 322, 647, 650, 678, 708
HaeII	RGCGCY	1 cut(s)	241
HapII	CCGG	1 cut(s)	299
HhaI	GCGC	4 cut(s)	44, 148, 240, 567
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	22, 375, 629
Hin6I	GCGC	4 cut(s)	42, 146, 238, 565
HinP1I	GCGC	4 cut(s)	42, 146, 238, 565
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	5 cut(s)	5, 206, 362, 538, 587
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	542, 688
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	385, 613
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	2 cut(s)	186, 311
HpyCH4V	TGCA	8 cut(s)	143, 224, 282, 304, 344, 599, 625, 652
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 149, 197, 273, 279, 471, 562
HpyF3I	CTNAG	2 cut(s)	132, 711
HpySE526I	ACGT	2 cut(s)	186, 311
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	22, 375, 629
HspAI	GCGC	4 cut(s)	42, 146, 238, 565
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	232, 684
LmnI	GCTCC	2 cut(s)	508, 657
LpnPI	CCDG	5 cut(s)	281, 312, 381, 438, 673
Lsp1109I	GCAGC	6 cut(s)	155, 260, 633, 636, 689, 694
MaeI	CTAG	2 cut(s)	182, 201
MaeII	ACGT	2 cut(s)	186, 311
MaeIII	GTNAC	2 cut(s)	250, 437
MalI	GATC	2 cut(s)	234, 686
MboI	GATC	2 cut(s)	232, 684
MboII	GAAGA	2 cut(s)	204, 626
MfeI	CAATTG	1 cut(s)	641
MhlI	GDGCHC	2 cut(s)	92, 662
MluCI	AATT	5 cut(s)	382, 498, 524, 593, 641
MlyI	GAGTC	3 cut(s)	14, 215, 596
MnlI	CCTC	3 cut(s)	42, 672, 684
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	2 cut(s)	294, 314
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	641
MvnI	CGCG	2 cut(s)	148, 565
MwoI	GCNNNNNNNGC	7 cut(s)	96, 149, 197, 273, 279, 471, 562
NdeII	GATC	2 cut(s)	232, 684
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	22, 375, 629
NlaIV	GGNNCC	3 cut(s)	266, 475, 659
NmuCI	GTSAC	2 cut(s)	250, 437
NsbI	TGCGCA	1 cut(s)	43
NspI	RCATGY	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	663
PciI	ACATGT	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	362, 538
PkrI	GCNGC	7 cut(s)	145, 275, 323, 648, 651, 679, 709
PleI	GAGTC	3 cut(s)	13, 214, 595
PpsI	GAGTC	3 cut(s)	13, 214, 595
PscI	ACATGT	1 cut(s)	371
PspN4I	GGNNCC	3 cut(s)	266, 475, 659
PspXI	VCTCGAGB	1 cut(s)	663
PstI	CTGCAG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	294, 314
SatI	GCNGC	7 cut(s)	144, 274, 322, 647, 650, 678, 708
Sau3AI	GATC	2 cut(s)	232, 684
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	3 cut(s)	14, 215, 596
SduI	GDGCHC	2 cut(s)	92, 662
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	663
SlaI	CTCGAG	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	293, 663
SmoI	CTYRAG	2 cut(s)	293, 663
Sse9I	AATT	5 cut(s)	382, 498, 524, 593, 641
SsiI	CCGC	5 cut(s)	54, 148, 322, 494, 519
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	2 cut(s)	182, 201
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	2 cut(s)	189, 314
TaqI	TCGA	1 cut(s)	664
TasI	AATT	5 cut(s)	382, 498, 524, 593, 641
TatI	WGTACW	1 cut(s)	218
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	2 cut(s)	362, 538
Tru1I	TTAA	2 cut(s)	294, 314
Tru9I	TTAA	2 cut(s)	294, 314
TscAI	CASTG	1 cut(s)	491
TseFI	GTSAC	2 cut(s)	250, 437
TseI	GCWGC	6 cut(s)	143, 273, 646, 649, 677, 707
Tsp45I	GTSAC	2 cut(s)	250, 437
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	1 cut(s)	375
XhoI	CTCGAG	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	2 cut(s)	182, 201
ZraI	GACGTC	1 cut(s)	187
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.