Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Forward (+)

42703609 .. 42704073

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATCCTCCACTTTGTGCAAAGGGTTGCGGATTTTACGGTTCTCTGGAAAATAAGAACATGTGCTCAAAATGCTATGTTGATTATCTAAAACAAGAACTGATCGCCCAGTCAGTCATGGCATTTGAAGTACTTAAGAATTCAGTTACTACTACACCTACTCCTCTACCAAACTCATCGTCTCTACTTGATGACCATCCTAGCCCGACGGTGACGGTTTCTGGTACCAACGGTTTGAATACTACGGGATCAACTACAACTACTACTACAAGAATCAGGTGCCCCTGCTGTAATAAAAAGTTGGGACTGCTGGGATTTCACTGCTGCTGTGGTGATGTGTTTTGTGGAGAGCATCGCTACCCCGAAAAACACTCGTGCGGTGTGGATTTGAAGACAGCTGGAAGGGAGGTTTTGGCCAAGCAAAACCCGCTTTGCAAGGGTGATAAGATGCAGCATAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

154

Amino Acids

16.71

Weight (kDa)

8.41

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	5 - 26	8.1e-10	A20-like zinc finger
zf-AN1	PF01428	95 - 127	1.7e-07	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	2 cut(s)	224, 279
AciI	CCGC	3 cut(s)	30, 378, 428
AclWI	GGATC	2 cut(s)	12, 256
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	139, 459
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	2 cut(s)	132, 226
AflII	CTTAAG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	128, 238, 391
AluBI	AGCT	1 cut(s)	398
AluI	AGCT	1 cut(s)	398
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	12, 256
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	324, 451
ApoI	RAATTY	2 cut(s)	139, 459
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
Asp718I	GGTACC	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	223, 344, 452
BaeGI	GKGCMC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	224, 279
BauI	CACGAG	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	201
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	325, 452
BlsI	GCNGC	2 cut(s)	326, 453
BmcAI	AGTACT	1 cut(s)	132
BmiI	GGNNCC	3 cut(s)	6, 226, 281
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	361, 438
BmuI	ACTGGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	195
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	311
BseYI	CCCAGC	1 cut(s)	310
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	2 cut(s)	224, 279
BsiHKAI	GWGCWC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	68, 284
Bsp143I	GATC	3 cut(s)	4, 102, 248
BspACI	CCGC	3 cut(s)	30, 378, 428
BspANI	GGCC	1 cut(s)	416
BspLI	GGNNCC	3 cut(s)	6, 226, 281
BspPI	GGATC	2 cut(s)	12, 256
BspT107I	GGYRCC	2 cut(s)	224, 279
BspTI	CTTAAG	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	4, 102, 248
BssSI	CACGAG	1 cut(s)	373
Bst2BI	CACGAG	1 cut(s)	373
Bst4CI	ACNGT	4 cut(s)	41, 211, 217, 233
BstAFI	CTTAAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	3 cut(s)	7, 105, 251
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	4, 102, 248
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 427
BstNSI	RCATGY	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	416
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	131, 225
CviAII	CATG	2 cut(s)	61, 118
CviJI	RGCY	3 cut(s)	204, 398, 416
CviKI_1	RGCY	3 cut(s)	204, 398, 416
CviQI	GTAC	2 cut(s)	131, 225
DpnI	GATC	3 cut(s)	6, 104, 250
DpnII	GATC	3 cut(s)	4, 102, 248
DraIII	CACNNNGTG	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	2 cut(s)	64, 121
FaiI	YATR	4 cut(s)	62, 78, 119, 456
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	60, 117
FauI	CCCGC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	325, 452
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	325, 452
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	2 cut(s)	325, 452
GsaI	CCCAGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	64, 121
HinfI	GANTC	1 cut(s)	273
HphI	GGTGA	3 cut(s)	223, 344, 452
Hpy188III	TCNNGA	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	4 cut(s)	41, 211, 217, 233
HpyCH4V	TGCA	3 cut(s)	20, 435, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 427
Hsp92II	CATG	2 cut(s)	64, 121
KpnI	GGTACC	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	4, 102, 248
LpnPI	CCDG	7 cut(s)	32, 122, 207, 262, 296, 298, 384
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	2 cut(s)	361, 438
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	145, 211
MalI	GATC	3 cut(s)	6, 104, 250
MboI	GATC	3 cut(s)	4, 102, 248
MboII	GAAGA	1 cut(s)	403
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	68, 284
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	2 cut(s)	139, 459
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	3 cut(s)	18, 174, 400
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	2 cut(s)	135, 463
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	72, 427
NdeII	GATC	3 cut(s)	4, 102, 248
NlaIII	CATG	2 cut(s)	64, 121
NlaIV	GGNNCC	3 cut(s)	6, 226, 281
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	64
PciI	ACATGT	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	326, 453
PscI	ACATGT	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	6, 226, 281
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	132, 226
RsaNI	GTAC	2 cut(s)	131, 225
SaqAI	TTAA	2 cut(s)	135, 463
SatI	GCNGC	2 cut(s)	325, 452
Sau3AI	GATC	3 cut(s)	4, 102, 248
ScaI	AGTACT	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	68, 284
SetI	ASST	4 cut(s)	160, 281, 400, 411
SfaNI	GCATC	2 cut(s)	361, 438
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	139, 459
SsiI	CCGC	3 cut(s)	30, 378, 428
SspMI	CTAG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	41, 211, 217, 233
TasI	AATT	2 cut(s)	139, 459
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	135, 463
Tru9I	TTAA	2 cut(s)	135, 463
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	324, 451
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	134
XapI	RAATTY	2 cut(s)	139, 459
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.