Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Forward (+)

20206841 .. 20207290

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGCCTCCAATGTGCGCAAAGGGCTGTGGCTTTTATGGCTGTGTCGAAAACAAGAACATGTGCTCAAAGTGCTACAAAGATCATGTAAAACAAGAGAATCTCAATGCTCAGTCGACCACGGTGGCTTCATCAGTGGAAAAAACTGATCTGGGTTCCATCGCTAGAGGAATTTCCTTGCTTTCTTTTCAAGATTCAGATGATTCAGTTTCTAATACTAATACTAGTGATATTGATAATAATAGTGGATCAAAGAAAAACAGGTGTGAAAGTTGCAACAGAAAGGTTGGAGTGTTGGGGTTTGAATGCCGTTGTGGTGGAGTGTTTTGCGGAAAGCATAGGTATCCAGAAACACACTCGTGCAATTTGGATCTCAAGAAGGCTGGAAGAGATGTTTTGGCCAAGCAAAACCCTCTTTGCAAGGGTGACAAGCTGCAGTGCAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

150

Amino Acids

16.27

Weight (kDa)

8.55

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	2 cut(s)	256, 378
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	171
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	191, 305
AhlI	ACTAGT	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
Alw21I	GWGCWC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	256, 378
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	401
BauI	CACGAG	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	354
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	165, 225
BfmI	CTRYAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	6, 157
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	420
BshFI	GGCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	82, 148, 248, 370
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	6, 157
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	2 cut(s)	256, 378
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	4 cut(s)	82, 148, 248, 370
BssSI	CACGAG	1 cut(s)	358
Bst2BI	CACGAG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	4 cut(s)	85, 151, 251, 373
BstMBI	GATC	4 cut(s)	82, 148, 248, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 39, 72
BstNSI	RCATGY	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	2 cut(s)	141, 443
CfoI	GCGC	1 cut(s)	20
CviAII	CATG	2 cut(s)	61, 86
CviJI	RGCY	8 cut(s)	7, 27, 33, 42, 128, 383, 401, 433
CviKI_1	RGCY	8 cut(s)	7, 27, 33, 42, 128, 383, 401, 433
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	4 cut(s)	84, 150, 250, 372
DpnII	GATC	4 cut(s)	82, 148, 248, 370
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
FaeI	CATG	2 cut(s)	64, 89
FaiI	YATR	4 cut(s)	39, 62, 87, 339
FatI	CATG	2 cut(s)	60, 85
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	2 cut(s)	165, 225
FspI	TGCGCA	1 cut(s)	19
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	64, 89
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	3 cut(s)	100, 194, 203
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	3 cut(s)	191, 347, 376
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	5 cut(s)	276, 363, 420, 436, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 39, 72
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	64, 89
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	82, 148, 248, 370
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	137, 247, 360, 369, 427
Lsp1109I	GCAGC	1 cut(s)	420
MaeI	CTAG	2 cut(s)	165, 225
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	4 cut(s)	84, 150, 250, 372
MboI	GATC	4 cut(s)	82, 148, 248, 370
MboII	GAAGA	1 cut(s)	399
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	68
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	2 cut(s)	171, 364
MluNI	TGGCCA	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	18, 161, 423
Mox20I	TGGCCA	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	358
Msp20I	TGGCCA	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	311
MwoI	GCNNNNNNNGC	3 cut(s)	24, 39, 72
NdeII	GATC	4 cut(s)	82, 148, 248, 370
NlaIII	CATG	2 cut(s)	64, 89
NlaIV	GGNNCC	2 cut(s)	6, 157
NmuCI	GTSAC	1 cut(s)	425
NsbI	TGCGCA	1 cut(s)	19
NspI	RCATGY	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	358
PciI	ACATGT	1 cut(s)	60
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	100, 194, 203
PkrI	GCNGC	1 cut(s)	435
PscI	ACATGT	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	6, 157
PstI	CTGCAG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	358
SalI	GTCGAC	1 cut(s)	115
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	4 cut(s)	82, 148, 248, 370
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	4 cut(s)	266, 288, 344, 435
SfcI	CTRYAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	2 cut(s)	171, 364
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	2 cut(s)	165, 225
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	48, 116
TasI	AATT	2 cut(s)	171, 364
TfiI	GAWTC	3 cut(s)	100, 194, 203
TscAI	CASTG	2 cut(s)	141, 443
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	141, 443
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	2 cut(s)	165, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.