FvH4_7g28250

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002517
Physical Location & Seq
Reverse (-)
20967062 .. 20967422
361 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28250.t1

Sequence Viewer

Length: 327 bp
ATGGAGTCGCCAAGCAACAACAACTGTCCTCGACTCTGTGCAAGGGGATGCGGTTTCTATGGAAGTTTTGCAACCAACAGTATGTGTTCCAAGTGCTACCGTGATTATCAGAAAGAAGAAGAGCTTCTTGCCAAGTTTATTGCAGCGCCGAGCGCGGTGGCTCCGGTGGACAAAACCCTAGACGTCGACTCTGTATCTGCTAACAAGTCGTCGTCGACTAGTACAACTAGTGATGATCAGCCATCTGGTGTGACAAATAAAAAGAACTGTTGCCAGAATGAGAGCTGCGGTAAAAGTGACAAAACTTGCAAAACCTCACTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

109

Amino Acids

11.57

Weight (kDa)

8.06

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 11 - 34 2e-09 A20-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccI GTMKAC 2 cut(s) 186, 215
AccII CGCG 1 cut(s) 155
AciI CCGC 3 cut(s) 51, 155, 288
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 223
AhlI ACTAGT 2 cut(s) 218, 227
AluBI AGCT 2 cut(s) 124, 285
AluI AGCT 2 cut(s) 124, 285
ApeKI GCWGC 2 cut(s) 143, 285
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 2 cut(s) 148, 155
BbvI GCAGC 2 cut(s) 155, 272
BccI CCATC 1 cut(s) 250
BclI TGATCA 1 cut(s) 235
BcuI ACTAGT 2 cut(s) 218, 227
BfaI CTAG 3 cut(s) 179, 219, 228
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 2 cut(s) 144, 286
BlsI GCNGC 2 cut(s) 145, 287
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 163
BseGI GGATG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 155, 272
Bsh1236I CGCG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 164
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 3 cut(s) 51, 155, 288
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 114
BssMI GATC 1 cut(s) 235
BssNI GRCGYC 1 cut(s) 183
Bst4CI ACNGT 4 cut(s) 26, 80, 101, 269
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 53
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 2 cut(s) 148, 155
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 155, 272
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 317
CfoI GCGC 2 cut(s) 148, 155
Csp6I GTAC 1 cut(s) 222
CviJI RGCY 4 cut(s) 124, 161, 241, 285
CviKI_1 RGCY 4 cut(s) 124, 161, 241, 285
CviQI GTAC 1 cut(s) 222
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
FaiI YATR 2 cut(s) 60, 83
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 111, 143
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 2 cut(s) 186, 215
Fnu4HI GCNGC 2 cut(s) 144, 286
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 144, 286
FspBI CTAG 3 cut(s) 179, 219, 228
GlaI GCGC 2 cut(s) 147, 154
GluI GCNGC 2 cut(s) 144, 286
HaeII RGCGCY 1 cut(s) 149
HapII CCGG 1 cut(s) 164
HhaI GCGC 2 cut(s) 148, 155
Hin1I GRCGYC 1 cut(s) 183
Hin6I GCGC 2 cut(s) 146, 153
HinP1I GCGC 2 cut(s) 146, 153
HincII GTYRAC 2 cut(s) 187, 216
HindII GTYRAC 2 cut(s) 187, 216
HinfI GANTC 3 cut(s) 5, 33, 188
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 3 cut(s) 169, 187, 216
Hpy188I TCNGA 1 cut(s) 111
Hpy8I GTNNAC 3 cut(s) 169, 187, 216
Hpy99I CGWCG 3 cut(s) 188, 214, 217
HpyCH4III ACNGT 4 cut(s) 26, 80, 101, 269
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 41, 71, 143, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 183
HspAI GCGC 2 cut(s) 146, 153
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 235
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 3 cut(s) 177, 231, 287
Lsp1109I GCAGC 2 cut(s) 155, 272
LweI GCATC 1 cut(s) 38
MaeI CTAG 3 cut(s) 179, 219, 228
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 250, 296
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 128, 131
MlyI GAGTC 3 cut(s) 14, 27, 182
MnlI CCTC 2 cut(s) 39, 325
MroXI GAANNNNTTC 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 322
MspI CCGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 162
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 250, 296
PciSI GCTCTTC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 123
PkrI GCNGC 2 cut(s) 145, 287
PleI GAGTC 3 cut(s) 13, 27, 182
PpsI GAGTC 3 cut(s) 13, 27, 182
PspN4I GGNNCC 1 cut(s) 162
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 322
SalI GTCGAC 2 cut(s) 185, 214
SapI GCTCTTC 1 cut(s) 114
SatI GCNGC 2 cut(s) 144, 286
Sau3AI GATC 1 cut(s) 235
SchI GAGTC 3 cut(s) 14, 27, 182
SetI ASST 4 cut(s) 126, 186, 287, 317
SfaNI GCATC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 322
SpeI ACTAGT 2 cut(s) 218, 227
SsiI CCGC 3 cut(s) 51, 155, 288
SspMI CTAG 3 cut(s) 179, 219, 228
TaaI ACNGT 4 cut(s) 26, 80, 101, 269
TaiI ACGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 31, 186, 215
TatI WGTACW 1 cut(s) 221
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 2 cut(s) 250, 296
TseI GCWGC 2 cut(s) 143, 285
Tsp45I GTSAC 2 cut(s) 250, 296
TspRI CASTG 1 cut(s) 324
XmiI GTMKAC 2 cut(s) 186, 215
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 3 cut(s) 179, 219, 228
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.