Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

53892337 .. 53892904

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG417200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGTTGCCAAGAAACATGGACTGTCCCCATCCACTCTGTGCAAGAGGTTGCGGTTTCTTTGGGACTTTGGCAAACAAGAATATGTGCTCAAAGTGCTACACTGATTATCTGAAAGAACAGCTTCTTGCTAAGCATACTGCAGAGCCGGCCGTGGTGCCTTCAGTGGAGAAAAACCTAGACGTCGCTGTTTCTGCTAGCGAGTCGTCGTCAACCACTACAACTAGTGATCAGCCATGTGGTGTGACAAAGAATTGGTGCCAGAGCTATAGCTGCATGAAGAAAGTTGGTCCAGTGCAAGTGGCGTTAAAATGCCGCTGTAGTGGAGTGTTTTGTCCAGAGCACAGGTTAGCTGAAAAGCACTCATGTAGTGTGGATTACAAGAGGCCTGGAGGAGAGCTCTTGGCCAAGCAAAACCCAGTTTGCAAGGGTGACAAGTTAAAGCAGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

151

Amino Acids

16.53

Weight (kDa)

8.79

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	13 - 34	3.5e-09	A20-like zinc finger
zf-AN1	PF01428	87 - 128	9.6e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	157, 258
AciI	CCGC	2 cut(s)	54, 316
AcoI	YGGCCR	2 cut(s)	150, 405
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	5 cut(s)	124, 267, 273, 353, 400
AluI	AGCT	5 cut(s)	124, 267, 273, 353, 400
Alw21I	GWGCWC	3 cut(s)	92, 345, 402
AoxI	GGCC	3 cut(s)	150, 386, 405
ApeKI	GCWGC	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	2 cut(s)	157, 258
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	3 cut(s)	92, 345, 402
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	39
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	1 cut(s)	229
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	3 cut(s)	179, 198, 225
BfmI	CTRYAG	3 cut(s)	141, 268, 319
BisI	GCNGC	2 cut(s)	274, 316
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	2 cut(s)	275, 317
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	159, 260
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	413
BmtI	GCTAGC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	413
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpmI	CTGGAG	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	293, 419
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	31
BseNI	ACTGG	2 cut(s)	293, 419
BseRI	GAGGAG	1 cut(s)	408
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	152, 388, 407
BshNI	GGYRCC	2 cut(s)	157, 258
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	3 cut(s)	92, 345, 402
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	12, 79
BsmFI	GGGAC	2 cut(s)	12, 79
BsnI	GGCC	3 cut(s)	152, 388, 407
Bsp1286I	GDGCHC	3 cut(s)	92, 345, 402
Bsp143I	GATC	1 cut(s)	229
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	54, 316
BspANI	GGCC	3 cut(s)	152, 388, 407
BspLI	GGNNCC	2 cut(s)	159, 260
BspMAI	CTGCAG	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	201
BspT107I	GGYRCC	2 cut(s)	157, 258
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	293, 419
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	150, 199
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 149, 194, 273
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	3 cut(s)	141, 268, 319
BstV1I	GCAGC	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	152, 388, 407
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	3 cut(s)	102, 171, 300
Cac8I	GCNNGC	2 cut(s)	150, 199
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	290
CviAII	CATG	4 cut(s)	19, 237, 277, 366
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraIII	CACNNNGTG	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	150, 405
EagI	CGGCCG	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	400
EclXI	CGGCCG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	290
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	4 cut(s)	22, 240, 280, 369
FaiI	YATR	7 cut(s)	20, 86, 138, 238, 270, 278, 367
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	2 cut(s)	12, 79
FatI	CATG	4 cut(s)	18, 236, 276, 365
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	274, 316
FokI	GGATG	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	2 cut(s)	274, 316
FspBI	CTAG	3 cut(s)	179, 198, 225
GluI	GCNGC	2 cut(s)	274, 316
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	152, 388, 407
HapII	CCGG	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	22, 240, 280, 369
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	2 cut(s)	188, 211
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	44, 143, 276, 298, 426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 149, 194, 273
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	22, 240, 280, 369
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	8 cut(s)	162, 275, 306, 331, 351, 375, 402, 432
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	3 cut(s)	179, 198, 225
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	244, 431
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	92, 345, 402
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	1 cut(s)	253
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	4 cut(s)	41, 378, 386, 441
Mox20I	TGGCCA	1 cut(s)	407
MroNI	GCCGGC	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	2 cut(s)	308, 440
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	96, 149, 194, 273
NaeI	GCCGGC	1 cut(s)	150
NdeII	GATC	1 cut(s)	229
NgoMIV	GCCGGC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	197
NlaIII	CATG	4 cut(s)	22, 240, 280, 369
NlaIV	GGNNCC	2 cut(s)	159, 260
NmuCI	GTSAC	2 cut(s)	244, 431
PceI	AGGCCT	1 cut(s)	388
PdiI	GCCGGC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	275, 317
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	159, 260
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	308, 440
SatI	GCNGC	2 cut(s)	274, 316
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	3 cut(s)	92, 345, 402
SetI	ASST	9 cut(s)	52, 126, 180, 186, 269, 275, 350, 355, 402
SfcI	CTRYAG	3 cut(s)	141, 268, 319
SinI	GGWCC	1 cut(s)	290
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	1 cut(s)	253
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	2 cut(s)	54, 316
SspMI	CTAG	3 cut(s)	179, 198, 225
SstI	GAGCTC	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	186
TasI	AATT	1 cut(s)	253
TauI	GCSGC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	308, 440
Tru9I	TTAA	2 cut(s)	308, 440
TscAI	CASTG	3 cut(s)	109, 171, 300
TseFI	GTSAC	2 cut(s)	244, 431
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	2 cut(s)	244, 431
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	109, 171, 300
VpaK11BI	GGWCC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	3 cut(s)	179, 198, 225
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.