Rh1BG364700

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002517
Physical Location & Seq
Forward (+)
49369222 .. 49370074
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG364700.1

Sequence Viewer

Length: 438 bp
ATGGACTGTCCTTCACCACTGTGTGTAAAAGGTTGCGGTTTCTTTGGGACTTCGGCAAACAAGAATATGTGCTCAAAGTGCTACACAGAGTATCTGAAAGAACAGCTTCTTGCTAAGCCTACTGCAGCGCCGGCCATGGTGGCTTCAGTGAAAAAAACCCTAGACGTCACTGTTTCTGCAAGCGAGTCGTTGTCAATTACTACAACTACTGATCAGCCATGTGGTGCGACAAAGAATAAGTGCCAGAACGAGAGCTGCAAGAAGAACCTTAACCTGGTGGAAATGATGACGTTAAAATGCCGCTGTGGTGGAGTGTTTTGTACGAAGCATAAGTATCCTTACCACTCATGTAGTGTGAATTACAAGAAACCTGGACGAGAGCTTTTGGCCAAGCAAAACCCAATTTGCCAGGCTGACAAGTTAAAGTACGGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

145

Amino Acids

15.84

Weight (kDa)

9.1

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 7 - 28 1.7e-10 A20-like zinc finger
zf-AN1 PF01428 81 - 121 8.1e-06 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
AciI CCGC 2 cut(s) 36, 301
AcoI YGGCCR 2 cut(s) 132, 387
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 2 cut(s) 322, 428
AfiI CCNNNNNNNGG 1 cut(s) 274
AjnI CCWGG 3 cut(s) 273, 370, 408
AleI CACNNNNGTG 1 cut(s) 19
AluBI AGCT 3 cut(s) 106, 255, 382
AluI AGCT 3 cut(s) 106, 255, 382
Alw21I GWGCWC 1 cut(s) 74
AoxI GGCC 2 cut(s) 132, 387
ApeKI GCWGC 2 cut(s) 125, 255
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 6
BalI TGGCCA 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 137, 242
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 3 cut(s) 275, 372, 410
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 1 cut(s) 211
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 131
BfuI GTATCC 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 3 cut(s) 126, 256, 301
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 3 cut(s) 127, 257, 302
Bme1390I CCNGG 3 cut(s) 275, 372, 410
BmrFI CCNGG 3 cut(s) 275, 372, 410
Bpu1102I GCTNAGC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 130
BseBI CCWGG 3 cut(s) 275, 372, 410
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 137, 242
BshFI GGCC 2 cut(s) 134, 389
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 2 cut(s) 134, 389
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 211
Bsp1720I GCTNAGC 1 cut(s) 114
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 2 cut(s) 36, 301
BspANI GGCC 2 cut(s) 134, 389
BspMAI CTGCAG 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 3 cut(s) 275, 372, 410
Bst4CI ACNGT 3 cut(s) 8, 21, 172
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 132, 181
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 78, 131, 140
BstNI CCWGG 3 cut(s) 275, 372, 410
BstSCI CCNGG 3 cut(s) 273, 370, 408
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 137, 242
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 2 cut(s) 134, 389
BtgI CCRYGG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 17, 153, 168
Cac8I GCNNGC 2 cut(s) 132, 181
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 130
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 321, 427
CviAII CATG 3 cut(s) 136, 219, 348
CviJI RGCY 9 cut(s) 106, 118, 134, 143, 217, 255, 382, 389, 413
CviKI_1 RGCY 9 cut(s) 106, 118, 134, 143, 217, 255, 382, 389, 413
CviQI GTAC 2 cut(s) 321, 427
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DraIII CACNNNGTG 1 cut(s) 23
EaeI YGGCCR 2 cut(s) 132, 387
Eco130I CCWWGG 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 273, 370, 408
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 3 cut(s) 139, 222, 351
FaiI YATR 5 cut(s) 68, 137, 220, 330, 349
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 135, 218, 347
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 126, 256, 301
Fsp4HI GCNGC 3 cut(s) 126, 256, 301
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 129
GluI GCNGC 3 cut(s) 126, 256, 301
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 134, 389
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 139, 222, 351
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 3 cut(s) 8, 21, 172
HpyCH4IV ACGT 2 cut(s) 165, 290
HpyCH4V TGCA 3 cut(s) 125, 179, 258
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 131, 140
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 165, 290
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 139, 222, 351
HspAI GCGC 1 cut(s) 128
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 8 cut(s) 144, 257, 260, 287, 357, 384, 395, 422
Lsp1109I GCAGC 2 cut(s) 137, 242
MabI ACCWGGT 1 cut(s) 273
MaeI CTAG 1 cut(s) 161
MaeII ACGT 2 cut(s) 165, 290
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 74
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 3 cut(s) 195, 358, 402
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 1 cut(s) 194
Mox20I TGGCCA 1 cut(s) 389
MroNI GCCGGC 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 389
MseI TTAA 3 cut(s) 270, 293, 422
MslI CAYNNNNRTG 1 cut(s) 19
Msp20I TGGCCA 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 3 cut(s) 275, 372, 410
MvaI CCWGG 3 cut(s) 275, 372, 410
MwoI GCNNNNNNNGC 3 cut(s) 78, 131, 140
NaeI GCCGGC 1 cut(s) 132
NcoI CCATGG 1 cut(s) 135
NdeII GATC 1 cut(s) 211
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 139, 222, 351
NmuCI GTSAC 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 19
PdiI GCCGGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 3 cut(s) 127, 257, 302
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 3 cut(s) 273, 370, 408
PspGI CCWGG 3 cut(s) 273, 370, 408
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 2 cut(s) 322, 428
RsaNI GTAC 2 cut(s) 321, 427
RseI CAYNNNNRTG 1 cut(s) 19
SaqAI TTAA 3 cut(s) 270, 293, 422
SatI GCNGC 3 cut(s) 126, 256, 301
Sau3AI GATC 1 cut(s) 211
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 275, 372, 410
SduI GDGCHC 1 cut(s) 74
SetI ASST 9 cut(s) 34, 108, 168, 257, 270, 276, 293, 373, 384
SexAI ACCWGGT 1 cut(s) 273
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 19
Sse9I AATT 3 cut(s) 195, 358, 402
SsiI CCGC 2 cut(s) 36, 301
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 273, 370, 408
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 3 cut(s) 8, 21, 172
TaiI ACGT 2 cut(s) 168, 293
TasI AATT 3 cut(s) 195, 358, 402
TauI GCSGC 1 cut(s) 303
Tru1I TTAA 3 cut(s) 270, 293, 422
Tru9I TTAA 3 cut(s) 270, 293, 422
TscAI CASTG 3 cut(s) 24, 153, 175
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 125, 255
Tsp45I GTSAC 1 cut(s) 166
TspRI CASTG 3 cut(s) 24, 153, 175
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 161
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.