Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

20435219 .. 20435689

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1204600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGCCTCCGATGTGTGCAAGCGGATGTGGGTTCTACGGCACTGTGGAAAACAAGAACATGTGCTCGAAATGCTATAAAGATCATCTAAAACACGAAACTATGAATGCAGCCTCAGCCGACGTGACTTCAAAGGAAAAACTCAATCTGGGTTCCTTCATTAGTGGAATTTCTTCCTCGTCTTATTTTCGAACTTCATCAGATACTTCACTGGTCTCTGAAGATCATAACTTTGGGAATAATAATATGGGAACATCAAGTGTCGGTGTGATAAAAAAAAATAGGTGCCAAAGCTGCAGCAGAAAGGTTGGAGTGTTGGGATTTCAGTGCCGCTGTGGTGGTGTGTTTTGTGGAACGCATAGGTACCCAGAAGAACATTCATGTGATGTGGATCTCAAGCAGGCTGGGAGAGATGTTTTAGCCAAGAAAAACCCGCTCTGCAAGGGTGACAAGTTAGAATGGAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

157

Amino Acids

17.08

Weight (kDa)

8.63

Isoelectric Point (pI)

25.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	5 - 27	7.2e-11	A20-like zinc finger
zf-AN1	PF01428	96 - 129	2.5e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	363
AccB1I	GGYRCC	2 cut(s)	285, 363
AccBSI	CCGCTC	1 cut(s)	436
AciI	CCGC	3 cut(s)	24, 331, 434
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	132
AjiI	CACGTC	1 cut(s)	124
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	110, 294, 297
ApoI	RAATTY	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	172
Asp718I	GGTACC	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	458
AsuII	TTCGAA	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	285, 363
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	122, 281, 309
BceAI	ACGGC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	295
BisI	GCNGC	4 cut(s)	111, 295, 298, 331
BlsI	GCNGC	4 cut(s)	112, 296, 299, 332
BmgBI	CACGTC	1 cut(s)	124
BmiI	GGNNCC	4 cut(s)	6, 154, 287, 365
Bpu10I	CCTNAGC	1 cut(s)	115
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	390
BseGI	GGATG	1 cut(s)	32
BseJI	GATNNNNATC	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	122, 281, 309
BseYI	CCCAGC	1 cut(s)	404
BshNI	GGYRCC	2 cut(s)	285, 363
BsiHKAI	GWGCWC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	82, 223, 391
BspACI	CCGC	3 cut(s)	24, 331, 434
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	4 cut(s)	6, 154, 287, 365
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	190
BspT107I	GGYRCC	2 cut(s)	285, 363
BspTNI	GGTCTC	1 cut(s)	220
BsrBI	CCGCTC	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	82, 223, 391
Bst4CI	ACNGT	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	22, 402
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	32
BstKTI	GATC	3 cut(s)	85, 226, 394
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	3 cut(s)	82, 223, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 116, 294
BstNSI	RCATGY	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	122, 281, 309
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	42, 209, 332
Cac8I	GCNNGC	2 cut(s)	22, 402
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	61, 381
CviJI	RGCY	6 cut(s)	7, 113, 119, 294, 404, 422
CviKI_1	RGCY	6 cut(s)	7, 113, 119, 294, 404, 422
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	3 cut(s)	84, 225, 393
DpnII	GATC	3 cut(s)	82, 223, 391
Eco31I	GGTCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	240
FaeI	CATG	2 cut(s)	64, 384
FaiI	YATR	7 cut(s)	62, 78, 104, 228, 248, 360, 382
FatI	CATG	2 cut(s)	60, 380
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	111, 295, 298, 331
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	111, 295, 298, 331
GluI	GCNGC	4 cut(s)	111, 295, 298, 331
GsaI	CCCAGC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	64, 384
HphI	GGTGA	1 cut(s)	458
Hpy188I	TCNGA	3 cut(s)	12, 202, 220
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	20, 110, 297, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 116, 294
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	64, 384
KpnI	GGTACC	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	82, 223, 391
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	134, 197, 381, 386, 390
Lsp1109I	GCAGC	3 cut(s)	122, 281, 309
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	124, 446
MalI	GATC	3 cut(s)	84, 225, 393
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	3 cut(s)	82, 223, 391
MboII	GAAGA	3 cut(s)	165, 233, 383
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	18, 124, 187, 456
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	1 cut(s)	469
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	3 cut(s)	72, 116, 294
NdeII	GATC	3 cut(s)	82, 223, 391
NlaIII	CATG	2 cut(s)	64, 384
NlaIV	GGNNCC	4 cut(s)	6, 154, 287, 365
NmuCI	GTSAC	2 cut(s)	124, 446
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	190
PciI	ACATGT	1 cut(s)	60
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	112, 296, 299, 332
PscI	ACATGT	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	4 cut(s)	6, 154, 287, 365
PstI	CTGCAG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	469
SatI	GCNGC	4 cut(s)	111, 295, 298, 331
Sau3AI	GATC	3 cut(s)	82, 223, 391
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	5 cut(s)	126, 287, 296, 309, 365
SfcI	CTRYAG	1 cut(s)	295
SfuI	TTCGAA	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	3 cut(s)	24, 331, 434
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	68, 190
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	469
Tru9I	TTAA	1 cut(s)	469
TscAI	CASTG	3 cut(s)	49, 216, 332
TseFI	GTSAC	2 cut(s)	124, 446
TseI	GCWGC	3 cut(s)	110, 294, 297
Tsp45I	GTSAC	2 cut(s)	124, 446
TspDTI	ATGAA	4 cut(s)	119, 148, 186, 369
TspRI	CASTG	3 cut(s)	49, 216, 332
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.