Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

20957498 .. 20958059

Gene Structure 562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGTCGCCAAGCAACAACAACTGTCCTCCACGCTGTGCAAGGGGATGCGGTTTCTATGGAAATTTTGCAACCAACAGTATGTGTTCCAAGTGCTACCGTGATTATCAGAAAGAAGAAGAGCTTCTTGCCAAGTTTATTGCAGCGCCAAGCGCGGTGGCTCCGGTGGAGAAAACCCTAGACGTCGAATCTGTATCTGCTAACGAGTCGCCGTCGTCGACTAGTGATGATCAGCCATCTGGTGTGACAAAGAAAAGGAACTGTTGCCAGAATGAGAGCTGCAAGAAGAAGCTTACACTGGTGCAAGTGATGTCGGGAAAATGCCGCTGTGGGGGAGTGTTTTGTGACAAGCATAGGCTTCCTGAAGAGCACTCATGTAGTGTGAATTTCAAGGAGACTGGAAAAGAGGTTTTGGCCCAGCAGAACCCAGTTTGCGTTGCTGACAAGTTAGAGAATAGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

155

Amino Acids

16.88

Weight (kDa)

7.92

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	12 - 34	8.3e-09	A20-like zinc finger
zf-AN1	PF01428	89 - 127	4.5e-11	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	218
AccII	CGCG	1 cut(s)	155
AciI	CCGC	3 cut(s)	51, 155, 325
AcsI	RAATTY	2 cut(s)	64, 385
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	391
AhlI	ACTAGT	1 cut(s)	221
AluBI	AGCT	3 cut(s)	124, 279, 292
AluI	AGCT	3 cut(s)	124, 279, 292
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	143, 279
ApoI	RAATTY	2 cut(s)	64, 385
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	148, 155
AspS9I	GGNCC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	155, 266
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	3 cut(s)	179, 222, 463
BfoI	RGCGCY	1 cut(s)	149
BisI	GCNGC	3 cut(s)	144, 280, 325
BlsI	GCNGC	3 cut(s)	145, 281, 326
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	3 cut(s)	303, 403, 428
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseNI	ACTGG	3 cut(s)	303, 403, 428
BseXI	GCAGC	2 cut(s)	155, 266
BseYI	CCCAGC	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	3 cut(s)	51, 155, 325
BspANI	GGCC	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	162
BspQI	GCTCTTC	2 cut(s)	114, 360
BsrI	ACTGG	3 cut(s)	303, 403, 428
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	183
Bst4CI	ACNGT	4 cut(s)	26, 80, 101, 263
Bst6I	CTCTTC	2 cut(s)	114, 360
BstACI	GRCGYC	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	148, 155
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	155, 266
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	296
CfoI	GCGC	2 cut(s)	148, 155
Cfr13I	GGNCC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	1 cut(s)	375
CviJI	RGCY	7 cut(s)	124, 161, 235, 279, 292, 358, 416
CviKI_1	RGCY	7 cut(s)	124, 161, 235, 279, 292, 358, 416
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraIII	CACNNNGTG	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	114, 360
EarI	CTCTTC	2 cut(s)	114, 360
Eco57I	CTGAAG	1 cut(s)	384
FaeI	CATG	1 cut(s)	378
FaiI	YATR	4 cut(s)	60, 83, 354, 376
FalI	AAGNNNNNCTT	4 cut(s)	108, 140, 111, 143
FatI	CATG	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	3 cut(s)	144, 280, 325
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	144, 280, 325
FspBI	CTAG	3 cut(s)	179, 222, 463
GlaI	GCGC	2 cut(s)	147, 154
GluI	GCNGC	3 cut(s)	144, 280, 325
GsaI	CCCAGC	1 cut(s)	421
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	2 cut(s)	148, 155
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	378
Hin6I	GCGC	2 cut(s)	146, 153
HinP1I	GCGC	2 cut(s)	146, 153
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	5, 188, 206
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	315, 362
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	3 cut(s)	188, 217, 220
HpyCH4III	ACNGT	4 cut(s)	26, 80, 101, 263
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	41, 71, 143, 282, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	378
HspAI	GCGC	2 cut(s)	146, 153
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LguI	GCTCTTC	2 cut(s)	114, 360
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	8 cut(s)	177, 225, 281, 284, 375, 384, 431, 441
Lsp1109I	GCAGC	2 cut(s)	155, 266
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	3 cut(s)	179, 222, 463
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	244, 344
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	4 cut(s)	128, 131, 298, 377
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	2 cut(s)	64, 385
MlyI	GAGTC	2 cut(s)	14, 215
MnlI	CCTC	2 cut(s)	39, 400
MroXI	GAANNNNTTC	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	378
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	244, 344
PciSI	GCTCTTC	2 cut(s)	114, 360
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	145, 281, 326
PleI	GAGTC	2 cut(s)	13, 214
PpsI	GAGTC	2 cut(s)	13, 214
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	415
SalI	GTCGAC	1 cut(s)	217
SapI	GCTCTTC	2 cut(s)	114, 360
SatI	GCNGC	3 cut(s)	144, 280, 325
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	14, 215
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	5 cut(s)	126, 186, 281, 294, 411
SfaNI	GCATC	1 cut(s)	38
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	2 cut(s)	64, 385
SsiI	CCGC	3 cut(s)	51, 155, 325
SspMI	CTAG	3 cut(s)	179, 222, 463
TaaI	ACNGT	4 cut(s)	26, 80, 101, 263
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	186, 218
TasI	AATT	2 cut(s)	64, 385
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	2 cut(s)	244, 344
TseI	GCWGC	2 cut(s)	143, 279
Tsp45I	GTSAC	2 cut(s)	244, 344
TspRI	CASTG	1 cut(s)	303
XapI	RAATTY	2 cut(s)	64, 385
XmiI	GTMKAC	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	3 cut(s)	179, 222, 463
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.