Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Forward (+)

10837763 .. 10838292

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGTCGGAAACCAACATGGACCCTCCACTTTGTGCAAAAGGTTGCGGGTTCTATGGCCTTGTGGCAAAGAAGAACATGTGCTCGATGTGCTATGTTGACGATCTAAAACAAGAACTGATTGCCCAGTCACTCAAGGTATATGAAGAACTCAACAACTCAGTTACTAATAGTTTGAATAGTACTGGATCAACTGCAACTGCAAGAACAAGGTGCTCCTGCTGCAATAAAAAGTTGGGACTGCTGGGCTTTGACTGCAAATGTGGTCTTGTGTTTTGTGGACAGCATCGCTACCCGGAAAAACACTCTTGCTGTGTGGATTTCAAGGCTGCCGGAAGGGAGGTTTTGGCCATGCAAAACCCGCTTTGCAAGGCTGATAAGATGGAGTCGAGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

133

Amino Acids

14.48

Weight (kDa)

8.41

Isoelectric Point (pI)

24.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	11 - 32	2e-08	A20-like zinc finger
zf-AN1	PF01428	72 - 104	1.3e-07	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	48, 362
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	178, 325
Alw21I	GWGCWC	2 cut(s)	86, 218
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	2 cut(s)	58, 348
ApeKI	GCWGC	2 cut(s)	222, 329
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	86, 218
BbvI	GCAGC	2 cut(s)	209, 316
BccI	CCATC	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	296
BisI	GCNGC	2 cut(s)	223, 330
BlsI	GCNGC	2 cut(s)	224, 331
BmcAI	AGTACT	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	127, 190
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	2 cut(s)	127, 190
BseXI	GCAGC	2 cut(s)	209, 316
BseYI	CCCAGC	1 cut(s)	244
BshFI	GGCC	2 cut(s)	60, 350
BsiHKAI	GWGCWC	2 cut(s)	86, 218
BsiSI	CCGG	2 cut(s)	296, 333
BslFI	GGGAC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	60, 350
Bsp1286I	GDGCHC	2 cut(s)	86, 218
Bsp143I	GATC	2 cut(s)	103, 188
BspACI	CCGC	2 cut(s)	48, 362
BspANI	GGCC	2 cut(s)	60, 350
BspCNI	CTCAG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	127, 190
BssMI	GATC	2 cut(s)	103, 188
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	160
BstKTI	GATC	2 cut(s)	106, 191
BstMBI	GATC	2 cut(s)	103, 188
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 222, 255, 361
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	209, 316
BsuRI	GGCC	2 cut(s)	60, 350
BtgZI	GCGATG	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	3 cut(s)	19, 79, 352
CviJI	RGCY	5 cut(s)	60, 249, 329, 350, 374
CviKI_1	RGCY	5 cut(s)	60, 249, 329, 350, 374
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	2 cut(s)	105, 190
DpnII	GATC	2 cut(s)	103, 188
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	22
FaeI	CATG	3 cut(s)	22, 82, 355
FaiI	YATR	8 cut(s)	20, 57, 80, 96, 142, 144, 353, 397
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	3 cut(s)	18, 78, 351
FauI	CCCGC	2 cut(s)	41, 369
Fnu4HI	GCNGC	2 cut(s)	223, 330
Fsp4HI	GCNGC	2 cut(s)	223, 330
GluI	GCNGC	2 cut(s)	223, 330
GsaI	CCCAGC	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	60, 350
HapII	CCGG	2 cut(s)	296, 333
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	22, 82, 355
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	2 cut(s)	296, 333
Hpy166II	GTNNAC	2 cut(s)	100, 281
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	390
Hpy8I	GTNNAC	2 cut(s)	100, 281
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	330
HpyCH4V	TGCA	7 cut(s)	38, 197, 203, 225, 258, 355, 369
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 222, 255, 361
HpyF3I	CTNAG	1 cut(s)	160
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	22, 82, 355
Kzo9I	GATC	2 cut(s)	103, 188
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	6 cut(s)	140, 171, 230, 232, 309, 346
Lsp1109I	GCAGC	2 cut(s)	209, 316
LweI	GCATC	1 cut(s)	295
MaeIII	GTNAC	2 cut(s)	129, 163
MalI	GATC	2 cut(s)	105, 190
MboI	GATC	2 cut(s)	103, 188
MboII	GAAGA	2 cut(s)	85, 158
MhlI	GDGCHC	2 cut(s)	86, 218
MlsI	TGGCCA	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	2 cut(s)	36, 334
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	2 cut(s)	296, 333
MspR9I	CCNGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	4 cut(s)	90, 222, 255, 361
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	103, 188
NlaIII	CATG	3 cut(s)	22, 82, 355
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	82
PciI	ACATGT	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	224, 331
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SatI	GCNGC	2 cut(s)	223, 330
Sau3AI	GATC	2 cut(s)	103, 188
Sau96I	GGNCC	1 cut(s)	22
ScaI	AGTACT	1 cut(s)	184
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	86, 218
SetI	ASST	4 cut(s)	46, 141, 215, 345
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	2 cut(s)	48, 362
StyD4I	CCNGG	1 cut(s)	294
TaqI	TCGA	2 cut(s)	86, 389
TatI	WGTACW	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	2 cut(s)	222, 329
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	22
XceI	RCATGY	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.