Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Forward (+)

43342007 .. 43342504

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGTCGCAAAACAACATGGATCCTCCACTTTGTGCAAAGGGTTGCGGATTTTTTGGCTCTCTGGAAAATAAGAACATGTGCTCAAAATGCTATGTTGATTATCTAAAACAAGAACTGATCGCCCAGTCAGTCATGGCATTTGAAGTACTTAAGAATTCAGTTACTACTACTCCTACTCCTCTACCAAACTCATCATCTCTACTTGATGACCATCCTAGCCCGACGGTGACGGTTTCTGGTACCAACAGTTTGAATAGTACTGGATCAACTACAACTACAACTACAAGAATCAGGTGCCCCTGCTGTAACAAAAAGTTGGGACTGCTGGGATTTCACTGCTGCTGTGGTGGTGTGTTTTGTGGAGAGCATCGCTACCCCGAAAAACACTCGTGCGGTGTGGATTTGAAGACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

139

Amino Acids

14.89

Weight (kDa)

7.97

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	11 - 32	8.6e-10	A20-like zinc finger
zf-AN1	PF01428	101 - 133	3.8e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	2 cut(s)	242, 297
AciI	CCGC	2 cut(s)	48, 396
AclWI	GGATC	3 cut(s)	17, 30, 274
AcsI	RAATTY	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	3 cut(s)	150, 244, 262
AflII	CTTAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	146, 256, 409
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw21I	GWGCWC	1 cut(s)	86
AlwI	GGATC	3 cut(s)	17, 30, 274
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	157
Asp718I	GGTACC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	242, 297
BauI	CACGAG	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
BmcAI	AGTACT	2 cut(s)	150, 262
BmiI	GGNNCC	3 cut(s)	24, 244, 299
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 163, 187, 193
Bse1I	ACTGG	2 cut(s)	127, 268
Bse8I	GATNNNNATC	1 cut(s)	213
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	127, 268
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	328
BshNI	GGYRCC	2 cut(s)	242, 297
BsiHKAI	GWGCWC	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	86, 302
Bsp143I	GATC	3 cut(s)	22, 120, 266
BspACI	CCGC	2 cut(s)	48, 396
BspLI	GGNNCC	3 cut(s)	24, 244, 299
BspPI	GGATC	3 cut(s)	17, 30, 274
BspT107I	GGYRCC	2 cut(s)	242, 297
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	127, 268
BssMI	GATC	3 cut(s)	22, 120, 266
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	391
Bst4CI	ACNGT	3 cut(s)	229, 235, 251
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	25, 123, 269
BstMBI	GATC	3 cut(s)	22, 120, 266
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	149, 243, 261
CviAII	CATG	3 cut(s)	19, 79, 136
CviJI	RGCY	3 cut(s)	60, 222, 416
CviKI_1	RGCY	3 cut(s)	60, 222, 416
CviQI	GTAC	3 cut(s)	149, 243, 261
DpnI	GATC	3 cut(s)	24, 122, 268
DpnII	GATC	3 cut(s)	22, 120, 266
DraIII	CACNNNGTG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	157
FaeI	CATG	3 cut(s)	22, 82, 139
FaiI	YATR	4 cut(s)	20, 80, 96, 137
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	3 cut(s)	18, 78, 135
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	343
GsaI	CCCAGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	22, 82, 139
HinfI	GANTC	1 cut(s)	291
HphI	GGTGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	65
Hpy99I	CGWCG	2 cut(s)	10, 229
HpyCH4III	ACNGT	3 cut(s)	229, 235, 251
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	22, 82, 139
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	22, 120, 266
LpnPI	CCDG	7 cut(s)	50, 140, 225, 249, 280, 314, 316
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	163, 229, 308
MalI	GATC	3 cut(s)	24, 122, 268
MboI	GATC	3 cut(s)	22, 120, 266
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	86, 302
MluCI	AATT	1 cut(s)	157
MnlI	CCTC	2 cut(s)	36, 192
MseI	TTAA	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeII	GATC	3 cut(s)	22, 120, 266
NlaIII	CATG	3 cut(s)	22, 82, 139
NlaIV	GGNNCC	3 cut(s)	24, 244, 299
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	82
PciI	ACATGT	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	344
PscI	ACATGT	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	24, 244, 299
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	3 cut(s)	150, 244, 262
RsaNI	GTAC	3 cut(s)	149, 243, 261
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	3 cut(s)	22, 120, 266
ScaI	AGTACT	2 cut(s)	150, 262
SduI	GDGCHC	2 cut(s)	86, 302
SetI	ASST	2 cut(s)	299, 418
SfaNI	GCATC	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	2 cut(s)	48, 396
SspMI	CTAG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	229, 235, 251
TasI	AATT	1 cut(s)	157
TatI	WGTACW	2 cut(s)	148, 260
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	229
TspRI	CASTG	1 cut(s)	344
Vha464I	CTTAAG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	82
XspI	CTAG	1 cut(s)	219
ZrmI	AGTACT	2 cut(s)	150, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.