RchiOBHm_Chr3g0459841

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002517
Physical Location & Seq
Forward (+)
8164634 .. 8165095
462 bp
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UTR
Exon/CDS
Intron
PRQ42639

Sequence Viewer

Length: 462 bp
ATGGAGTCTCCAAGCAACATGGACTGTCCCCCTCCACTCTGCGCAAATGGTTGCGGTTTCTTTGGGACTTCGGCAAACAAGAATATGTGCTCAAAGTGCTACACGAAGTATCTGAAAGAAAAGCTTCTTGCTAAGCCTACTGCAGCGCGGGCTGTGGTGGTGGCTTCAGTGGAGAAAACCCTAGACGTCGCTGTTTCTGCTAGCGAGTCGTCTTCAAGTACTGCAACTAATGATCAGCGCACTTGTGGTGTGACAAAGAATAGGTGCCAGAGCTGCGATTGCAACAAGAAACTTAAGCCGGTGCAAATGACGTTAAAGTGCCGCCGTGGTGGAGTGCTTTGTGCAGAGCATAGGTTGGCTGAATCCCACACATGTAGTGTGAATTACAAGAAGGCTGGACAAGAGCTTTTGACCAAGCAAAACCCAGTTTGCAAGGGTGACAAGTTAGAATCGAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

153

Amino Acids

16.52

Weight (kDa)

9.14

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 13 - 34 6.2e-11 A20-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
Acc16I TGCGCA 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 264
AccII CGCG 1 cut(s) 148
AciI CCGC 3 cut(s) 54, 148, 322
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 220
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 371
AgsI TTSAA 1 cut(s) 216
AluBI AGCT 3 cut(s) 124, 273, 406
AluI AGCT 3 cut(s) 124, 273, 406
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 143, 273
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 3 cut(s) 44, 148, 240
AsuHPI GGTGA 1 cut(s) 449
AsuNHI GCTAGC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 155, 260
BceAI ACGGC 1 cut(s) 309
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 182, 201
BfmI CTRYAG 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 3 cut(s) 144, 274, 322
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 3 cut(s) 145, 275, 323
BmcAI AGTACT 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 266
BmrI ACTGGG 1 cut(s) 419
BmtI GCTAGC 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 204
Bpu1102I GCTNAGC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 425
BseXI GCAGC 2 cut(s) 155, 260
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 2 cut(s) 12, 79
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 12, 79
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 232
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 3 cut(s) 54, 148, 322
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 266
BspMAI CTGCAG 1 cut(s) 145
BspOI GCTAGC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 264
BspTI CTTAAG 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 1 cut(s) 232
BssNI GRCGYC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 186
BstAFI CTTAAG 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 150, 202
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 148
BstHHI GCGC 3 cut(s) 44, 148, 240
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 5 cut(s) 96, 149, 197, 273, 279
BstNSI RCATGY 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 141
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 155, 260
BstV2I GAAGAC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 150, 202
CfoI GCGC 3 cut(s) 44, 148, 240
Cfr10I RCCGGY 1 cut(s) 298
Csp6I GTAC 1 cut(s) 219
CviAII CATG 2 cut(s) 19, 372
CviJI RGCY 9 cut(s) 124, 136, 152, 164, 273, 298, 359, 395, 406
CviKI_1 RGCY 9 cut(s) 124, 136, 152, 164, 273, 298, 359, 395, 406
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 2 cut(s) 22, 375
FaiI YATR 4 cut(s) 20, 86, 351, 373
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 2 cut(s) 12, 79
FatI CATG 2 cut(s) 18, 371
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 144, 274, 322
Fsp4HI GCNGC 3 cut(s) 144, 274, 322
FspBI CTAG 2 cut(s) 182, 201
FspI TGCGCA 1 cut(s) 43
GlaI GCGC 3 cut(s) 43, 147, 239
GluI GCNGC 3 cut(s) 144, 274, 322
HapII CCGG 1 cut(s) 299
HhaI GCGC 3 cut(s) 44, 148, 240
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 2 cut(s) 22, 375
Hin6I GCGC 3 cut(s) 42, 146, 238
HinP1I GCGC 3 cut(s) 42, 146, 238
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 4 cut(s) 5, 206, 362, 449
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 449
Hpy188I TCNGA 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 2 cut(s) 186, 311
HpyCH4V TGCA 6 cut(s) 143, 224, 282, 304, 344, 432
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 149, 197, 273, 279
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 186, 311
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 2 cut(s) 22, 375
HspAI GCGC 3 cut(s) 42, 146, 238
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 4 cut(s) 281, 312, 381, 438
Lsp1109I GCAGC 2 cut(s) 155, 260
MaeI CTAG 2 cut(s) 182, 201
MaeII ACGT 2 cut(s) 186, 311
MaeIII GTNAC 2 cut(s) 250, 437
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 1 cut(s) 382
MlyI GAGTC 2 cut(s) 14, 215
MnlI CCTC 2 cut(s) 42, 447
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 2 cut(s) 294, 314
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 5 cut(s) 96, 149, 197, 273, 279
NdeII GATC 1 cut(s) 232
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 2 cut(s) 22, 375
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 2 cut(s) 250, 437
NsbI TGCGCA 1 cut(s) 43
NspI RCATGY 1 cut(s) 375
PciI ACATGT 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 362, 449
PkrI GCNGC 3 cut(s) 145, 275, 323
PleI GAGTC 2 cut(s) 13, 214
PpsI GAGTC 2 cut(s) 13, 214
PscI ACATGT 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 266
PstI CTGCAG 1 cut(s) 145
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 294, 314
SatI GCNGC 3 cut(s) 144, 274, 322
Sau3AI GATC 1 cut(s) 232
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 2 cut(s) 14, 215
SduI GDGCHC 1 cut(s) 92
SetI ASST 7 cut(s) 126, 189, 266, 275, 314, 356, 408
SfcI CTRYAG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 382
SsiI CCGC 3 cut(s) 54, 148, 322
SspMI CTAG 2 cut(s) 182, 201
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 2 cut(s) 189, 314
TaqI TCGA 1 cut(s) 452
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 2 cut(s) 362, 449
Tru1I TTAA 2 cut(s) 294, 314
Tru9I TTAA 2 cut(s) 294, 314
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 2 cut(s) 250, 437
TseI GCWGC 2 cut(s) 143, 273
Tsp45I GTSAC 2 cut(s) 250, 437
TspRI CASTG 1 cut(s) 174
Vha464I CTTAAG 1 cut(s) 293
XceI RCATGY 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 2 cut(s) 182, 201
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.