Rw1G041120

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002517
Physical Location & Seq
Forward (+)
68094253 .. 68094713
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G041120.1

Sequence Viewer

Length: 390 bp
ATGGAGTTGCCAAGAAACATGGACTGTCCCCCTCCACTCTGTGCAAGAGGTTGCGGTTTCTTTGGGACTTTGGCAAACAAGAATATGTGCTCAAAGTTGGAGAAAAACCTAGACGTCGCTGTTTCTGCTAGCGAGTCGTCGTCAACCACTACAACTAGTGATCAGCCATGTGGTGTGACGACAAAGAATTGGTGCCAGAGCTATAGCTGCAAGAAGAAAGTTGGTCCAGTGCAAGTGGCGTTAAAATGCCGCTGTGGTGGAGTGTTTTGTCCAGAGCATAGGTTAGCTGAAAAGCACTCATGTAGTGTGGATTACAAGAGGCCTGGAGGAGAGCTCTTGGCCAAGCAAAACCCAGTTTGCAAGGGTGACAAGTTAAAGCAGAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

129

Amino Acids

14.02

Weight (kDa)

9.05

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 13 - 32 4.9e-07 A20-like zinc finger
zf-AN1 PF01428 65 - 106 6.3e-10 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 192
AciI CCGC 2 cut(s) 54, 250
AcoI YGGCCR 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 41
AhlI ACTAGT 1 cut(s) 155
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 4 cut(s) 201, 207, 287, 334
AluI AGCT 4 cut(s) 201, 207, 287, 334
Alw21I GWGCWC 2 cut(s) 92, 336
AoxI GGCC 2 cut(s) 320, 339
ApeKI GCWGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 377
AsuNHI GCTAGC 1 cut(s) 128
AvaII GGWCC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 341
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 92, 336
BbvI GCAGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 160
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 3 cut(s) 110, 129, 156
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 2 cut(s) 208, 250
BlsI GCNGC 2 cut(s) 209, 251
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 347
BmtI GCTAGC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BpmI CTGGAG 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 227, 353
BseBI CCWGG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 227, 353
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 2 cut(s) 322, 341
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 92, 336
BslFI GGGAC 2 cut(s) 12, 79
BsmFI GGGAC 2 cut(s) 12, 79
BsnI GGCC 2 cut(s) 322, 341
Bsp1286I GDGCHC 2 cut(s) 92, 336
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 54, 250
BspANI GGCC 2 cut(s) 322, 341
BspLI GGNNCC 1 cut(s) 194
BspOI GCTAGC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 192
BsrI ACTGG 2 cut(s) 227, 353
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 125, 207
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 194
BsuRI GGCC 2 cut(s) 322, 341
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 3 cut(s) 19, 168, 300
CviJI RGCY 7 cut(s) 166, 201, 207, 287, 322, 334, 341
CviKI_1 RGCY 7 cut(s) 166, 201, 207, 287, 322, 334, 341
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraIII CACNNNGTG 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 3 cut(s) 22, 171, 303
FaiI YATR 6 cut(s) 20, 86, 169, 204, 279, 301
FaqI GGGAC 2 cut(s) 12, 79
FatI CATG 3 cut(s) 18, 167, 299
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 208, 250
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 208, 250
FspBI CTAG 3 cut(s) 110, 129, 156
GluI GCNGC 2 cut(s) 208, 250
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 2 cut(s) 322, 341
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 3 cut(s) 22, 171, 303
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 144
Hpy99I CGWCG 2 cut(s) 119, 142
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 4 cut(s) 44, 210, 232, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 207
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 3 cut(s) 22, 171, 303
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 209, 240, 285, 309, 336, 366
Lsp1109I GCAGC 1 cut(s) 194
MaeI CTAG 3 cut(s) 110, 129, 156
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 175, 365
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 226
MhlI GDGCHC 2 cut(s) 92, 336
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 5 cut(s) 41, 42, 312, 320, 375
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 2 cut(s) 242, 374
Msp20I TGGCCA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 125, 207
NdeII GATC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 128
NlaIII CATG 3 cut(s) 22, 171, 303
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 175, 365
PceI AGGCCT 1 cut(s) 322
PkrI GCNGC 2 cut(s) 209, 251
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 242, 374
SatI GCNGC 2 cut(s) 208, 250
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 2 cut(s) 92, 336
SetI ASST 8 cut(s) 52, 111, 117, 203, 209, 284, 289, 336
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 1 cut(s) 224
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 1 cut(s) 187
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 2 cut(s) 54, 250
SspMI CTAG 3 cut(s) 110, 129, 156
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 117
TasI AATT 1 cut(s) 187
TauI GCSGC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 242, 374
Tru9I TTAA 2 cut(s) 242, 374
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 2 cut(s) 175, 365
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 2 cut(s) 175, 365
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 3 cut(s) 110, 129, 156
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.