Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

67408356 .. 67408817

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60562

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAGTTGCCAAGAAGCATGGACTGTCCCCCTCCACTCTGTGCAAGAGGTTGCGGTTTCTTTGGGACTTTGGCAAACAAGAATATGTGCTCAAAGTGCTACACTGATTATCTGAAAGAACAGCTTCTTGCTAAGCCTACTGCAGAGCCGGCCGTGGTGGTGCCTTCAGTGGAGAAAAACCTAGACGTCGCTGTTTCTGCTAGCGAGTCGTCGTCAACCACTACAACTAGTGATCAGCCATGTGGTGTGACGACAAAGAATTGGTGCCAGAGCTATAGCTGCAAGAAGAAACTTGGTCCAGTGCAAGTGGCGTTAAAATGCCGCTGTGGTGGAGTGTTTTGTCCAGAGCACAGGTTAGCTGAAAAGCACTCATGTAGTGTGGATTACAAGAGGCCTGGAGGAGAGCTCTTGGCTAAGCAAAACCCAGTTTGCAAGGGTGACAAGTTAAAGCAGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

153

Amino Acids

16.61

Weight (kDa)

8.88

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	13 - 34	3.6e-09	A20-like zinc finger
zf-AN1	PF01428	89 - 130	1.5e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccB1I	GGYRCC	2 cut(s)	160, 264
AciI	CCGC	2 cut(s)	54, 322
AcoI	YGGCCR	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	5 cut(s)	124, 273, 279, 359, 406
AluI	AGCT	5 cut(s)	124, 273, 279, 359, 406
Alw21I	GWGCWC	3 cut(s)	92, 351, 408
AoxI	GGCC	2 cut(s)	150, 392
ApeKI	GCWGC	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	449
AsuNHI	GCTAGC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	160, 264
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	3 cut(s)	92, 351, 408
BbvI	GCAGC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	396
BclI	TGATCA	1 cut(s)	232
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	3 cut(s)	182, 201, 228
BfmI	CTRYAG	2 cut(s)	141, 274
BisI	GCNGC	2 cut(s)	280, 322
BlpI	GCTNAGC	2 cut(s)	132, 414
BlsI	GCNGC	2 cut(s)	281, 323
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	162, 266
BmrFI	CCNGG	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	419
BmtI	GCTAGC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	419
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
BpmI	CTGGAG	1 cut(s)	417
Bpu1102I	GCTNAGC	2 cut(s)	132, 414
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	299, 425
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	299, 425
BseRI	GAGGAG	1 cut(s)	414
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	152, 394
BshNI	GGYRCC	2 cut(s)	160, 264
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	3 cut(s)	92, 351, 408
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	12, 79
BsmFI	GGGAC	2 cut(s)	12, 79
BsnI	GGCC	2 cut(s)	152, 394
Bsp1286I	GDGCHC	3 cut(s)	92, 351, 408
Bsp143I	GATC	1 cut(s)	232
Bsp1720I	GCTNAGC	2 cut(s)	132, 414
BspACI	CCGC	2 cut(s)	54, 322
BspANI	GGCC	2 cut(s)	152, 394
BspLI	GGNNCC	2 cut(s)	162, 266
BspMAI	CTGCAG	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	204
BspT107I	GGYRCC	2 cut(s)	160, 264
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	299, 425
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	150, 202
BstDEI	CTNAG	2 cut(s)	132, 414
BstDSI	CCRYGG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 149, 197, 279
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	2 cut(s)	141, 274
BstV1I	GCAGC	1 cut(s)	266
BstZI	CGGCCG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	152, 394
BtgI	CCRYGG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	102, 174, 306
Cac8I	GCNNGC	2 cut(s)	150, 202
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	296
CviAII	CATG	3 cut(s)	19, 240, 372
DdeI	CTNAG	2 cut(s)	132, 414
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraIII	CACNNNGTG	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	150
EagI	CGGCCG	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	406
EclXI	CGGCCG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	296
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	3 cut(s)	22, 243, 375
FaiI	YATR	5 cut(s)	20, 86, 241, 276, 373
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	2 cut(s)	12, 79
FatI	CATG	3 cut(s)	18, 239, 371
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	280, 322
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	280, 322
FspBI	CTAG	3 cut(s)	182, 201, 228
GluI	GCNGC	2 cut(s)	280, 322
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	152, 394
HapII	CCGG	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	22, 243, 375
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	191, 214
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	5 cut(s)	44, 143, 282, 304, 432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 149, 197, 279
HpyF3I	CTNAG	2 cut(s)	132, 414
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	22, 243, 375
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LpnPI	CCDG	8 cut(s)	162, 281, 312, 337, 357, 381, 408, 438
Lsp1109I	GCAGC	1 cut(s)	266
MaeI	CTAG	3 cut(s)	182, 201, 228
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	247, 437
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	298
MhlI	GDGCHC	3 cut(s)	92, 351, 408
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	41, 42, 384, 392, 447
MroNI	GCCGGC	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	2 cut(s)	314, 446
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	96, 149, 197, 279
NaeI	GCCGGC	1 cut(s)	150
NdeII	GATC	1 cut(s)	232
NgoMIV	GCCGGC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	22, 243, 375
NlaIV	GGNNCC	2 cut(s)	162, 266
NmuCI	GTSAC	2 cut(s)	247, 437
PceI	AGGCCT	1 cut(s)	394
PdiI	GCCGGC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	281, 323
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	162, 266
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	314, 446
SatI	GCNGC	2 cut(s)	280, 322
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	3 cut(s)	92, 351, 408
SetI	ASST	9 cut(s)	52, 126, 183, 189, 275, 281, 356, 361, 408
SfcI	CTRYAG	2 cut(s)	141, 274
SinI	GGWCC	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	1 cut(s)	259
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	2 cut(s)	54, 322
SspMI	CTAG	3 cut(s)	182, 201, 228
SstI	GAGCTC	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	189
TasI	AATT	1 cut(s)	259
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	314, 446
Tru9I	TTAA	2 cut(s)	314, 446
TscAI	CASTG	3 cut(s)	109, 174, 306
TseFI	GTSAC	2 cut(s)	247, 437
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	2 cut(s)	247, 437
TspRI	CASTG	3 cut(s)	109, 174, 306
VpaK11BI	GGWCC	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	3 cut(s)	182, 201, 228
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.