Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

20402693 .. 20403251

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1204500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGTCGCAAAAGAAGATGACAGAGCGTCCCTGCTGCGCAAACGGTTGCGACTTCTACGGCTCTGTGGAGACCAAGAACCTGTGCTCGCGATGCTACAGAGATTACCTGAAACAAGAGTCCCGAGAGAATATGAGGGCAGAGTCCGCCATGGTGGCTTTAATGAATAACCTTGATAGGGGTTCCGTCGCTGGGCGAATAAATCCCTTGCCTTCTTTGAAAGCATCAAACTCGGTTTCTCCCTCTGTCGCTGTTGCTGGTTGCTCCAAGAGTAGTAGTGGATCAACCTCTGTGAAAAATAGGTGCGAAAGCTGCAACAGAAAGGTTGGAGTGCTTGGCTTTAGCTGCCGGTGTGGTGGTGTGTTCTGTGGGACGCATCGCTACCCAGAAAAACACTGTTGCCATGTAGATTTCAAGATGGCTGGACGAGACGTTTTGGCCAAGCAAAACCCACTTTGCAAGGGTGACAAGCTAGAATGCAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

163

Amino Acids

17.72

Weight (kDa)

9.08

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	13 - 34	1.9e-10	A20-like zinc finger
zf-AN1	PF01428	102 - 136	4.5e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	40
AccII	CGCG	1 cut(s)	91
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	178, 192
AgsI	TTSAA	2 cut(s)	220, 415
AhdI	GACNNNNNGTC	1 cut(s)	27
AluBI	AGCT	3 cut(s)	312, 345, 472
AluI	AGCT	3 cut(s)	312, 345, 472
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	2 cut(s)	65, 423
AlwI	GGATC	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	3 cut(s)	36, 312, 345
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	3 cut(s)	23, 299, 332
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BcoDI	GTCTC	2 cut(s)	65, 423
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	97
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	3 cut(s)	37, 313, 346
BlsI	GCNGC	3 cut(s)	38, 314, 347
BmeRI	GACNNNNNGTC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	3 cut(s)	83, 233, 385
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 192
Bse118I	RCCGGY	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	178, 192
BseXI	GCAGC	3 cut(s)	23, 299, 332
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	3 cut(s)	15, 106, 385
BslI	CCNNNNNNNGG	2 cut(s)	178, 192
BsmAI	GTCTC	2 cut(s)	65, 423
BsmBI	CGTCTC	1 cut(s)	423
BsmFI	GGGAC	3 cut(s)	15, 106, 385
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	440
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	281
Bsp19I	CCATGG	1 cut(s)	150
Bsp68I	TCGCGA	1 cut(s)	91
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	440
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	47, 398
BstC8I	GCNNGC	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	284
BstMAI	GTCTC	2 cut(s)	65, 423
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 146, 155, 312, 345
BstSFI	CTRYAG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	23, 299, 332
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	2 cut(s)	106, 362
BtsIMutI	CAGTG	1 cut(s)	394
BtuMI	TCGCGA	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	348
CseI	GACGC	2 cut(s)	17, 382
CviAII	CATG	2 cut(s)	151, 404
CviJI	RGCY	8 cut(s)	63, 158, 312, 339, 345, 422, 440, 472
CviKI_1	RGCY	8 cut(s)	63, 158, 312, 339, 345, 422, 440, 472
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
DriI	GACNNNNNGTC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	438
Eam1105I	GACNNNNNGTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	2 cut(s)	154, 407
FaiI	YATR	3 cut(s)	134, 152, 405
FaqI	GGGAC	3 cut(s)	15, 106, 385
FatI	CATG	2 cut(s)	150, 403
Fnu4HI	GCNGC	3 cut(s)	37, 313, 346
Fsp4HI	GCNGC	3 cut(s)	37, 313, 346
FspBI	CTAG	1 cut(s)	473
FspI	TGCGCA	1 cut(s)	40
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	3 cut(s)	37, 313, 346
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	2 cut(s)	17, 382
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	154, 407
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	5, 119, 143
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	1 cut(s)	476
Hpy188III	TCNNGA	3 cut(s)	90, 123, 415
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	2 cut(s)	47, 398
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	315, 459, 480
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 146, 155, 312, 345
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	154, 407
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	9 cut(s)	46, 95, 122, 177, 243, 362, 399, 408, 466
Lsp1109I	GCAGC	3 cut(s)	23, 299, 332
LweI	GCATC	3 cut(s)	83, 233, 385
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	440
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	3 cut(s)	14, 128, 152
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	3 cut(s)	129, 253, 298
Mox20I	TGGCCA	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	482
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	5 cut(s)	93, 146, 155, 312, 345
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	154, 407
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	464
NruI	TCGCGA	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	40
PctI	GAATGC	1 cut(s)	482
PkrI	GCNGC	3 cut(s)	38, 314, 347
PleI	GAGTC	3 cut(s)	13, 127, 151
PpsI	GAGTC	3 cut(s)	13, 127, 151
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	184
RruI	TCGCGA	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	3 cut(s)	37, 313, 346
Sau3AI	GATC	1 cut(s)	281
SchI	GAGTC	3 cut(s)	14, 128, 152
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	3 cut(s)	83, 233, 385
SfcI	CTRYAG	1 cut(s)	97
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	47, 398
TaiI	ACGT	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	3 cut(s)	36, 312, 345
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	401
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.