Rh1AG399800

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002517
Physical Location & Seq
Reverse (-)
62696791 .. 62697643
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG399800.1

Sequence Viewer

Length: 441 bp
ATGGACTGTCCTTCACCACCACTGTGTGTCAAAGGTTGTGGTTTCTTTGGGACTTCGGCAAACAAGAATATGTGCTCAAAGTGCTACACAGAGTATCTGAAAGAACAGCTTCTTGCTAAGCCTACTGCAGCGCCGGCCGTGGTGGCTTCAGTGAAAAAAACCCTAGACGTCACTGTTTCTGCTAGCGAGTCGTTGTCAACTGCTACAACTACTGATCAGCCATGTGGTGCGACAAAGAATAAGTGCCAGAACGAGAGCTGCAACAAGAAACTTAACCTGGTGGAAATGATGACGTTAAAATGTCGCTGTGGTGGAATGTTTTGTACGAAGCATAAGTATCCTTACCACTCATGTAGTGTGAATTACAAGAAACCTGGACGAGAGCTTTTGGCCAAGCAAAACCCAATTTGCCAGGCTGACAAGTTAAAGTATAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

146

Amino Acids

15.99

Weight (kDa)

9.17

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 8 - 29 1.8e-10 A20-like zinc finger
zf-AN1 PF01428 82 - 122 6.5e-06 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 135, 390
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 26
AfaI GTAC 1 cut(s) 325
AjnI CCWGG 3 cut(s) 276, 373, 411
AleI CACNNNNGTG 1 cut(s) 22
AluBI AGCT 3 cut(s) 109, 258, 385
AluI AGCT 3 cut(s) 109, 258, 385
Alw21I GWGCWC 1 cut(s) 77
AoxI GGCC 2 cut(s) 135, 390
ApeKI GCWGC 2 cut(s) 128, 258
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 6
AsuNHI GCTAGC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 140, 245
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 3 cut(s) 278, 375, 413
BciVI GTATCC 1 cut(s) 348
BclI TGATCA 1 cut(s) 214
BfaI CTAG 2 cut(s) 164, 183
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 134
BfuI GTATCC 1 cut(s) 348
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 2 cut(s) 129, 259
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 2 cut(s) 130, 260
Bme1390I CCNGG 3 cut(s) 278, 375, 413
BmrFI CCNGG 3 cut(s) 278, 375, 413
BmtI GCTAGC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 133
BseBI CCWGG 3 cut(s) 278, 375, 413
BseDI CCNNGG 1 cut(s) 138
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 2 cut(s) 140, 245
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 137, 392
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 2 cut(s) 137, 392
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 214
Bsp1720I GCTNAGC 1 cut(s) 117
BspANI GGCC 2 cut(s) 137, 392
BspMAI CTGCAG 1 cut(s) 130
BspOI GCTAGC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 214
BssNI GRCGYC 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 278, 375, 413
Bst4CI ACNGT 3 cut(s) 8, 24, 175
BstACI GRCGYC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 135, 184
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 81, 134, 143
BstNI CCWGG 3 cut(s) 278, 375, 413
BstSCI CCNGG 3 cut(s) 276, 373, 411
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 140, 245
BstZI CGGCCG 1 cut(s) 135
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 2 cut(s) 137, 392
BtgI CCRYGG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 20, 156, 171
Cac8I GCNNGC 2 cut(s) 135, 184
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 133
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 2 cut(s) 222, 351
CviJI RGCY 9 cut(s) 109, 121, 137, 146, 220, 258, 385, 392, 416
CviKI_1 RGCY 9 cut(s) 109, 121, 137, 146, 220, 258, 385, 392, 416
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
DraIII CACNNNGTG 1 cut(s) 26
EaeI YGGCCR 2 cut(s) 135, 390
EagI CGGCCG 1 cut(s) 135
EclXI CGGCCG 1 cut(s) 135
Eco52I CGGCCG 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 3 cut(s) 276, 373, 411
FaeI CATG 2 cut(s) 225, 354
FaiI YATR 5 cut(s) 71, 223, 333, 352, 432
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 1 cut(s) 64
FatI CATG 2 cut(s) 221, 350
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 129, 259
Fsp4HI GCNGC 2 cut(s) 129, 259
FspBI CTAG 2 cut(s) 164, 183
GlaI GCGC 1 cut(s) 132
GluI GCNGC 2 cut(s) 129, 259
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 2 cut(s) 137, 392
HapII CCGG 1 cut(s) 134
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 225, 354
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 3 cut(s) 8, 24, 175
HpyCH4IV ACGT 2 cut(s) 168, 293
HpyCH4V TGCA 2 cut(s) 128, 261
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 134, 143
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 168, 293
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 225, 354
HspAI GCGC 1 cut(s) 131
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 8 cut(s) 147, 260, 263, 290, 360, 387, 398, 425
Lsp1109I GCAGC 2 cut(s) 140, 245
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 2 cut(s) 164, 183
MaeII ACGT 2 cut(s) 168, 293
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 77
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 2 cut(s) 361, 405
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 1 cut(s) 197
Mox20I TGGCCA 1 cut(s) 392
MroNI GCCGGC 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 108
MscI TGGCCA 1 cut(s) 392
MseI TTAA 3 cut(s) 273, 296, 425
MslI CAYNNNNRTG 1 cut(s) 22
Msp20I TGGCCA 1 cut(s) 392
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 3 cut(s) 278, 375, 413
MvaI CCWGG 3 cut(s) 278, 375, 413
MwoI GCNNNNNNNGC 3 cut(s) 81, 134, 143
NaeI GCCGGC 1 cut(s) 135
NdeII GATC 1 cut(s) 214
NgoMIV GCCGGC 1 cut(s) 133
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 2 cut(s) 225, 354
NmuCI GTSAC 1 cut(s) 169
OliI CACNNNNGTG 1 cut(s) 22
PdiI GCCGGC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 108
PkrI GCNGC 2 cut(s) 130, 260
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp6I CCWGG 3 cut(s) 276, 373, 411
PspGI CCWGG 3 cut(s) 276, 373, 411
PstI CTGCAG 1 cut(s) 130
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 22
SaqAI TTAA 3 cut(s) 273, 296, 425
SatI GCNGC 2 cut(s) 129, 259
Sau3AI GATC 1 cut(s) 214
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 278, 375, 413
SduI GDGCHC 1 cut(s) 77
SetI ASST 8 cut(s) 37, 111, 171, 260, 279, 296, 376, 387
SexAI ACCWGGT 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 22
Sse9I AATT 2 cut(s) 361, 405
SspMI CTAG 2 cut(s) 164, 183
StyD4I CCNGG 3 cut(s) 276, 373, 411
TaaI ACNGT 3 cut(s) 8, 24, 175
TaiI ACGT 2 cut(s) 171, 296
TasI AATT 2 cut(s) 361, 405
Tru1I TTAA 3 cut(s) 273, 296, 425
Tru9I TTAA 3 cut(s) 273, 296, 425
TscAI CASTG 3 cut(s) 27, 156, 178
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 2 cut(s) 128, 258
Tsp45I GTSAC 1 cut(s) 169
TspRI CASTG 3 cut(s) 27, 156, 178
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 2 cut(s) 164, 183
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.