Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

32452126 .. 32452578

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1258500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATTCACGAAACGACACCAACATGGAGCCTCCACTCTGTGCAAAAGGCTGCGGCTTCTTTGGCTCTGTGACGAATATGAACATGTGCTCAAATTGCTACAGACAATACCTGAAAGAAGAGCAGTTTGCTAAGCCTGCAGCCATGGTAGGGTTAGCTTCAGTGGACAACACACTCAGTGACTCAAGCTCCGCTACCGCAGCCGTTATTTCTTCTTTGCCTTCGCAATCTTCACAAGGTTCATCAGATTTATCGCAGAAAAAGAGGTGCTTGAGCTGCAAGAAAAGGGTTGGCCCGACAGGGTTCGAATGCCGCTGCGGCGGTGTGTTTTGTGGGAAGCATAGGTACCCTGAAGAACACTCATGCTCTGTGGATTACAAGAAGACTGGGCAAGAACTTTTGACCAAGCAAAACCCTCTTTGCAAGGGTGATAAGCTGCATTGGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

151

Amino Acids

16.41

Weight (kDa)

8.77

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	13 - 35	3.1e-10	A20-like zinc finger
zf-AN1	PF01428	92 - 127	1.4e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	345
AciI	CCGC	6 cut(s)	54, 192, 198, 313, 318, 321
AcuI	CTGAAG	2 cut(s)	144, 372
AdeI	CACNNNGTG	2 cut(s)	41, 179
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	84
AluBI	AGCT	4 cut(s)	158, 189, 276, 436
AluI	AGCT	4 cut(s)	158, 189, 276, 436
Alw21I	GWGCWC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	6 cut(s)	51, 140, 200, 276, 315, 436
Asp718I	GGTACC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	345
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BbsI	GAAGAC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	6 cut(s)	38, 152, 212, 263, 302, 423
BceAI	ACGGC	1 cut(s)	188
BfmI	CTRYAG	2 cut(s)	100, 138
BglI	GCCNNNNNGGC	1 cut(s)	318
BisI	GCNGC	9 cut(s)	52, 55, 141, 201, 277, 313, 316, 319, 437
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	9 cut(s)	53, 56, 142, 202, 278, 314, 317, 320, 438
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	30, 347
BmrI	ACTGGG	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	389
Bpu1102I	GCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	169, 292
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	391
BseXI	GCAGC	6 cut(s)	38, 152, 212, 263, 302, 423
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	6 cut(s)	54, 192, 198, 313, 318, 321
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	30, 347
BspMAI	CTGCAG	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	132, 176
BstDSI	CCRYGG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 96, 137, 200, 276, 318
BstNSI	RCATGY	1 cut(s)	88
BstSFI	CTRYAG	2 cut(s)	100, 138
BstV1I	GCAGC	6 cut(s)	38, 152, 212, 263, 302, 423
BstV2I	GAAGAC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	168, 184
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	4 cut(s)	25, 85, 145, 363
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	132, 176
DraIII	CACNNNGTG	2 cut(s)	41, 179
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	144
Eco57I	CTGAAG	2 cut(s)	144, 372
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	28, 88, 148, 366
FaiI	YATR	6 cut(s)	26, 80, 86, 146, 342, 364
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	4 cut(s)	24, 84, 144, 362
Fnu4HI	GCNGC	9 cut(s)	52, 55, 141, 201, 277, 313, 316, 319, 437
Fsp4HI	GCNGC	9 cut(s)	52, 55, 141, 201, 277, 313, 316, 319, 437
GluI	GCNGC	9 cut(s)	52, 55, 141, 201, 277, 313, 316, 319, 437
HaeIII	GGCC	1 cut(s)	294
Hin1II	CATG	4 cut(s)	28, 88, 148, 366
HinfI	GANTC	2 cut(s)	5, 182
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	231
HpyCH4V	TGCA	5 cut(s)	44, 140, 279, 423, 439
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 96, 137, 200, 276, 318
HpyF3I	CTNAG	2 cut(s)	132, 176
Hsp92II	CATG	4 cut(s)	28, 88, 148, 366
KpnI	GGTACC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	2 cut(s)	28, 194
LpnPI	CCDG	5 cut(s)	125, 150, 285, 363, 372
Lsp1109I	GCAGC	6 cut(s)	38, 152, 212, 263, 302, 423
MaeIII	GTNAC	2 cut(s)	70, 179
MboII	GAAGA	5 cut(s)	131, 204, 222, 365, 394
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	4 cut(s)	42, 258, 426, 438
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	314
MwoI	GCNNNNNNNGC	6 cut(s)	63, 96, 137, 200, 276, 318
NcoI	CCATGG	1 cut(s)	144
NlaIII	CATG	4 cut(s)	28, 88, 148, 366
NlaIV	GGNNCC	2 cut(s)	30, 347
NmuCI	GTSAC	2 cut(s)	70, 179
NspI	RCATGY	1 cut(s)	88
NspV	TTCGAA	1 cut(s)	306
PciI	ACATGT	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	9 cut(s)	53, 56, 142, 202, 278, 314, 317, 320, 438
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PscI	ACATGT	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	30, 347
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	114
SatI	GCNGC	9 cut(s)	52, 55, 141, 201, 277, 313, 316, 319, 437
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	8 cut(s)	114, 160, 191, 241, 269, 278, 347, 438
SfcI	CTRYAG	2 cut(s)	100, 138
SfuI	TTCGAA	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	184, 271
SmoI	CTYRAG	2 cut(s)	184, 271
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	6 cut(s)	54, 192, 198, 313, 318, 321
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	94
TauI	GCSGC	3 cut(s)	57, 315, 321
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	2 cut(s)	168, 184
TseFI	GTSAC	2 cut(s)	70, 179
TseI	GCWGC	6 cut(s)	51, 140, 200, 276, 315, 436
Tsp45I	GTSAC	2 cut(s)	70, 179
TspDTI	ATGAA	2 cut(s)	95, 231
TspRI	CASTG	2 cut(s)	168, 184
XceI	RCATGY	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.