Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

28509183 .. 28509638

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1186300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGTCACGAAAAGACATCAACATGGAGCCTCCACGCTGCGCAAAAGGCTGCGGTTTCTTTGGCTCTGTGACAAACATGAACATGTGCTCAAAGTGCTACAGAGAGTGTCTAAAGGAAGAGCAGTTTGCTAAGCCTGCAGCCATGGTAGGGTTAGCTTCAGTGGACAAACCCCTCATTGTCTCAAACTCCACTGCTACTGCAGCTGTTATTTCTTCTTTGCCTTCACAATCGTCACAAGGTTCTTCGGATTCGTCGGAGAAAAAGAGGTGCTTGAGCTGCAAGAAAAGGGTTGGACCGACGGGGTTTGAGTGCCGCTGCGGCGGTGTGTTCTGTGGGAAGCATAGGTACCCTGAAGAACACTCATGCTGTGTGGATTACAAGAAGACTGGACAAGATCTTTTGACCAAGCAAAACCCTCTTTGCAATGGTGATAAGTTGGATTGGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

152

Amino Acids

16.53

Weight (kDa)

8.79

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	13 - 35	4.2e-11	A20-like zinc finger
zf-AN1	PF01428	93 - 127	1e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	348
AciI	CCGC	4 cut(s)	54, 316, 321, 324
AcuI	CTGAAG	2 cut(s)	144, 375
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	84
AluBI	AGCT	3 cut(s)	158, 206, 279
AluI	AGCT	3 cut(s)	158, 206, 279
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	187
ApeKI	GCWGC	6 cut(s)	39, 51, 140, 203, 279, 318
Asp718I	GGTACC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	348
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	6 cut(s)	26, 38, 152, 215, 266, 305
BcoDI	GTCTC	1 cut(s)	187
BfmI	CTRYAG	3 cut(s)	100, 138, 201
BglI	GCCNNNNNGGC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	8 cut(s)	40, 52, 141, 204, 280, 316, 319, 322
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	8 cut(s)	41, 53, 142, 205, 281, 317, 320, 323
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	30, 350
BpiI	GAAGAC	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	394
BseXI	GCAGC	6 cut(s)	26, 38, 152, 215, 266, 305
BshNI	GGYRCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	397
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	4 cut(s)	54, 316, 321, 324
BspLI	GGNNCC	2 cut(s)	30, 350
BspMAI	CTGCAG	2 cut(s)	142, 205
BspQI	GCTCTTC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 96, 137, 203, 279, 321
BstNSI	RCATGY	1 cut(s)	88
BstSFI	CTRYAG	3 cut(s)	100, 138, 201
BstV1I	GCAGC	6 cut(s)	26, 38, 152, 215, 266, 305
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	168, 192
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	5 cut(s)	25, 79, 85, 145, 366
CviJI	RGCY	8 cut(s)	31, 51, 66, 136, 143, 158, 206, 279
CviKI_1	RGCY	8 cut(s)	31, 51, 66, 136, 143, 158, 206, 279
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	144, 375
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	28, 82, 88, 148, 369
FaiI	YATR	6 cut(s)	26, 80, 86, 146, 345, 367
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	5 cut(s)	24, 78, 84, 144, 365
Fnu4HI	GCNGC	8 cut(s)	40, 52, 141, 204, 280, 316, 319, 322
Fsp4HI	GCNGC	8 cut(s)	40, 52, 141, 204, 280, 316, 319, 322
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	8 cut(s)	40, 52, 141, 204, 280, 316, 319, 322
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	5 cut(s)	28, 82, 88, 148, 369
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	5, 251
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	250, 259
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	259, 304
HpyAV	CCTTC	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	140, 203, 282, 426
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 96, 137, 203, 279, 321
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	5 cut(s)	28, 82, 88, 148, 369
HspAI	GCGC	1 cut(s)	42
KpnI	GGTACC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	150, 366, 375
Lsp1109I	GCAGC	6 cut(s)	26, 38, 152, 215, 266, 305
MaeIII	GTNAC	3 cut(s)	6, 70, 234
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	5 cut(s)	131, 207, 237, 368, 397
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	3 cut(s)	237, 274, 420
MnlI	CCTC	5 cut(s)	42, 185, 261, 429, 441
MslI	CAYNNNNRTG	2 cut(s)	23, 83
MspA1I	CMGCKG	2 cut(s)	206, 318
MwoI	GCNNNNNNNGC	6 cut(s)	48, 96, 137, 203, 279, 321
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	5 cut(s)	28, 82, 88, 148, 369
NlaIV	GGNNCC	2 cut(s)	30, 350
NmuCI	GTSAC	3 cut(s)	6, 70, 234
NsbI	TGCGCA	1 cut(s)	43
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	8 cut(s)	41, 53, 142, 205, 281, 317, 320, 323
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	30, 350
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	2 cut(s)	142, 205
PsuI	RGATCY	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	2 cut(s)	23, 83
SapI	GCTCTTC	1 cut(s)	114
SatI	GCNGC	8 cut(s)	40, 52, 141, 204, 280, 316, 319, 322
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	160, 208, 244, 272, 281, 350
SfcI	CTRYAG	3 cut(s)	100, 138, 201
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	2 cut(s)	23, 83
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SsiI	CCGC	4 cut(s)	54, 316, 321, 324
StyI	CCWWGG	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	313
TauI	GCSGC	2 cut(s)	318, 324
TfiI	GAWTC	1 cut(s)	251
TscAI	CASTG	2 cut(s)	168, 199
TseFI	GTSAC	3 cut(s)	6, 70, 234
TseI	GCWGC	6 cut(s)	39, 51, 140, 203, 279, 318
Tsp45I	GTSAC	3 cut(s)	6, 70, 234
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	168, 199
VpaK11BI	GGWCC	1 cut(s)	296
XceI	RCATGY	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.