Rh3AG096900

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002517
Physical Location & Seq
Forward (+)
8070320 .. 8072119
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG096900.1

Sequence Viewer

Length: 507 bp
ATGGAAAGGCTCTTCAACTCAAGATGCCTTGAGTTTTCTACGGAAGATGCGTTGAGATATGTTTCTGATGCATGTCCCAGCCTTAGGGTTCTGTGTTTGCCTGATGTTAGGAATTCTGAAGGTTTTGATGAAGTTGATGATGAAATATCAAAGCTTGCTTCCCATATCGAATTTCTGTGTGAGGGTTCTCGCGGGCTATGGTGGGCTTCAGTGGAGAAAACCCTGGACGTCGCTGTTTCTGCTAGCGAGTCGTCTTCAAGTACTGCAACTAATGATCAGCGCCCTTGTGGTGTAACAAAGAATAGGTGCCAGAGCTGCGATTGCAACAAGAAACTTAAGCCGGCGCAAATGACGTTAAAATGCCACTGTGGTGGAGTGTTTTGTGCAGAGCATAGGTTGGCTGAATCCCACACATGTAGTGTGAATTACAAAAAGGCTGGACAAGAGCTTTTGACCAAACAAAACCCAGTTTGCAAGGGTGACAGCAAGTTAGAATCGAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

168

Amino Acids

18.6

Weight (kDa)

6.1

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 103 - 143 1.6e-07 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 306
AccII CGCG 1 cut(s) 192
AciI CCGC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 112, 170
AcuI CTGAAG 2 cut(s) 138, 192
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 84
AflII CTTAAG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 2 cut(s) 16, 258
AjnI CCWGG 1 cut(s) 222
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 3 cut(s) 154, 315, 448
AluI AGCT 3 cut(s) 154, 315, 448
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 2 cut(s) 112, 170
AspLEI GCGC 2 cut(s) 282, 346
AsuHPI GGTGA 1 cut(s) 491
AsuNHI GCTAGC 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 83
BanI GGYRCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 224
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 283
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 461
BmsI GCATC 3 cut(s) 14, 37, 58
BmtI GCTAGC 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 4, 50
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 467
Bse21I CCTNAGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 467
BseXI GCAGC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 192
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 308
BspOI GCTAGC 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 306
BspTI CTTAAG 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 1 cut(s) 467
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 156, 194, 244, 342
BstDEI CTNAG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 2 cut(s) 282, 346
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 3 cut(s) 239, 315, 321
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 2 cut(s) 75, 417
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 371
Bsu36I CCTNAGG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 216, 364
Cac8I GCNNGC 4 cut(s) 156, 194, 244, 342
CfoI GCGC 2 cut(s) 282, 346
Cfr10I RCCGGY 1 cut(s) 340
Csp6I GTAC 1 cut(s) 261
CviAII CATG 2 cut(s) 72, 414
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 83
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco57I CTGAAG 2 cut(s) 138, 192
Eco81I CCTNAGG 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 73
FaeI CATG 2 cut(s) 75, 417
FaiI YATR 6 cut(s) 60, 73, 165, 199, 393, 415
FaqI GGGAC 1 cut(s) 60
FatI CATG 2 cut(s) 71, 413
FauI CCCGC 1 cut(s) 185
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 316
FspBI CTAG 1 cut(s) 243
GlaI GCGC 2 cut(s) 281, 345
GluI GCNGC 1 cut(s) 316
GsaI CCCAGC 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 283
HapII CCGG 1 cut(s) 341
HhaI GCGC 2 cut(s) 282, 346
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 75, 417
Hin6I GCGC 2 cut(s) 280, 344
HinP1I GCGC 2 cut(s) 280, 344
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 3 cut(s) 248, 404, 494
HpaII CCGG 1 cut(s) 341
HphI GGTGA 1 cut(s) 491
Hpy188I TCNGA 2 cut(s) 67, 118
Hpy188III TCNNGA 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 2 cut(s) 228, 353
HpyCH4V TGCA 5 cut(s) 71, 266, 324, 386, 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 315, 321
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 2 cut(s) 228, 353
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 75, 417
HspAI GCGC 2 cut(s) 280, 344
KroI GCCGGC 1 cut(s) 340
KroNI GCCGGC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LguI GCTCTTC 1 cut(s) 17
LpnPI CCDG 8 cut(s) 91, 114, 209, 236, 323, 354, 423, 480
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 3 cut(s) 14, 37, 58
MaeI CTAG 1 cut(s) 243
MaeII ACGT 2 cut(s) 228, 353
MaeIII GTNAC 2 cut(s) 292, 479
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 3 cut(s) 4, 56, 246
MluCI AATT 3 cut(s) 112, 170, 424
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 2 cut(s) 175, 492
Mph1103I ATGCAT 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 340
MseI TTAA 2 cut(s) 336, 356
MslI CAYNNNNRTG 1 cut(s) 369
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 239, 315, 321
NaeI GCCGGC 1 cut(s) 342
NdeII GATC 1 cut(s) 274
NgoMIV GCCGGC 1 cut(s) 340
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 75, 417
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 479
NsiI ATGCAT 1 cut(s) 73
NspI RCATGY 2 cut(s) 75, 417
OliI CACNNNNGTG 1 cut(s) 369
PciI ACATGT 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PdiI GCCGGC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 404, 494
PkrI GCNGC 1 cut(s) 317
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 308
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 336, 356
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 1 cut(s) 274
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 224
SetI ASST 8 cut(s) 124, 156, 231, 308, 317, 356, 398, 450
SfaNI GCATC 3 cut(s) 14, 37, 58
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 3 cut(s) 19, 29, 335
SmoI CTYRAG 3 cut(s) 19, 29, 335
Sse9I AATT 3 cut(s) 112, 170, 424
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 2 cut(s) 231, 356
TaqI TCGA 2 cut(s) 168, 497
TasI AATT 3 cut(s) 112, 170, 424
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 2 cut(s) 404, 494
Tru1I TTAA 2 cut(s) 336, 356
Tru9I TTAA 2 cut(s) 336, 356
TscAI CASTG 2 cut(s) 216, 371
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 144, 156
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 2 cut(s) 216, 371
Vha464I CTTAAG 1 cut(s) 335
XapI RAATTY 2 cut(s) 112, 170
XceI RCATGY 2 cut(s) 75, 417
XspI CTAG 1 cut(s) 243
ZraI GACGTC 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.