Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002517

Physical Location & Seq

Genomic Coordinates Reverse (-)

23251450 .. 23251926

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGTTGCAAAACAACATGGATCCTCCACTTTGTGCAAAGGGTTGCGGATTTTACGGCTCTCTGGAAAATAAGAACATGTGCTCAAAATGCTATGTTGATTATCTGAAGCAAGAACTGATCGCCCAGTCAGTCATGGCATTTGAAGTACTTAAGAATTCAGTTACTACTACTCCTCTACCAAACTCATCATCTCTACTTGATGACCATCCTAGCCCGACGCCGACGGTTTCTGGTACCAACGGTTTGAATGGTACTGGATCAACCACAACTACAACTACAAGAATCAGGTGCCCCTGCTGTAACAAAAAGTTGGGACTGCTGGGATTTCACTGCTGCTGTGGTCATGTGTTTTGTGGAGAGCATCGCTACCCCGAAAAACACTCGTGCGGTGTGGATTTGAAGACAGCTGGAAGGGAGGTTTTGGCCAAGCAAAACCCGCTTTGCAAGGGTGATAAGATGCAGCATAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010042 GO:0010043 GO:0010045 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071214 GO:0071470 GO:0071472 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

159

Amino Acids

17.16

Weight (kDa)

8.56

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	11 - 32	8.5e-10	A20-like zinc finger
zf-AN1	PF01428	99 - 131	3e-07	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14225
fragaria_vesca	FvH4_7g11860 FvH4_7g28230 FvH4_7g28250
malus_domestica	MD01G1186300.v1.1 MD02G1204500.v1.1 MD02G1204600.v1.1 MD07G1258500.v1.1
prunus_persica	Prupe.2G145200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350541 RchiOBHm_Chr1g0375211 RchiOBHm_Chr1g0382661 RchiOBHm_Chr3g0459841
rosa_laevigata	RLG00000026168 RLG00000026679 RLG00000028477
rosa_multiflora	Rmu_sc0000240.1_g000039 Rmu_sc0000554.1_g000027 Rmu_sc0006862.1_g000002 Rmu_sc0017237.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282940 Rroxscaffold_4G00304760
rosa_rugosa	Rorug01G0211800 Rorug01G0389100 Rorug01G0435300 Rorug03G0038100
rosa_samantha	Rh1AG399800 Rh1BG195000 Rh1BG364700 Rh1BG417200 Rh1CG430700 Rh1DG223200 Rh1DG395300 Rh1DG449400 Rh3AG096900 Rh3BG099700 Rh3CG101500 Rh3DG101100
rosa_wichuraiana	Rw1G019570 Rw1G035490 Rw1G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	2 cut(s)	236, 291
AciI	CCGC	3 cut(s)	48, 390, 440
AclWI	GGATC	3 cut(s)	17, 30, 268
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	157, 471
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	221
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	3 cut(s)	150, 238, 256
AflII	CTTAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	146, 250, 403
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw21I	GWGCWC	1 cut(s)	86
AlwI	GGATC	3 cut(s)	17, 30, 268
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	2 cut(s)	336, 463
ApoI	RAATTY	2 cut(s)	157, 471
Asp718I	GGTACC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	236, 291
BauI	CACGAG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	2 cut(s)	337, 464
BlsI	GCNGC	2 cut(s)	338, 465
BmcAI	AGTACT	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	24, 238, 293
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	373, 450
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bse1I	ACTGG	2 cut(s)	127, 262
Bse8I	GATNNNNATC	1 cut(s)	207
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	127, 262
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	322
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	2 cut(s)	236, 291
BsiHKAI	GWGCWC	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	86, 296
Bsp143I	GATC	3 cut(s)	22, 120, 260
BspACI	CCGC	3 cut(s)	48, 390, 440
BspANI	GGCC	1 cut(s)	428
BspLI	GGNNCC	3 cut(s)	24, 238, 293
BspPI	GGATC	3 cut(s)	17, 30, 268
BspT107I	GGYRCC	2 cut(s)	236, 291
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	127, 262
BssMI	GATC	3 cut(s)	22, 120, 260
BssNI	GRCGYC	1 cut(s)	221
BssSI	CACGAG	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	229, 245
BstACI	GRCGYC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	25, 123, 263
BstMBI	GATC	3 cut(s)	22, 120, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 439
BstNSI	RCATGY	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	428
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	149, 237, 255
CviAII	CATG	4 cut(s)	19, 79, 136, 347
CviJI	RGCY	4 cut(s)	60, 216, 410, 428
CviKI_1	RGCY	4 cut(s)	60, 216, 410, 428
CviQI	GTAC	3 cut(s)	149, 237, 255
DpnI	GATC	3 cut(s)	24, 122, 262
DpnII	GATC	3 cut(s)	22, 120, 260
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	157
FaeI	CATG	4 cut(s)	22, 82, 139, 350
FaiI	YATR	6 cut(s)	20, 80, 96, 137, 348, 468
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	18, 78, 135, 346
FauI	CCCGC	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	337, 464
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	337, 464
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	337, 464
GsaI	CCCAGC	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	428
HgaI	GACGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	22, 82, 139, 350
HinfI	GANTC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	464
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	1 cut(s)	65
Hpy99I	CGWCG	2 cut(s)	223, 229
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	2 cut(s)	229, 245
HpyCH4V	TGCA	4 cut(s)	10, 38, 447, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 439
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	22, 82, 139, 350
KpnI	GGTACC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	22, 120, 260
LpnPI	CCDG	8 cut(s)	50, 140, 219, 243, 274, 308, 310, 396
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	373, 450
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	163, 302
MalI	GATC	3 cut(s)	24, 122, 262
MboI	GATC	3 cut(s)	22, 120, 260
MboII	GAAGA	1 cut(s)	415
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	86, 296
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	2 cut(s)	157, 471
MluNI	TGGCCA	1 cut(s)	428
MnlI	CCTC	3 cut(s)	36, 186, 412
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	2 cut(s)	153, 475
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	90, 439
NdeII	GATC	3 cut(s)	22, 120, 260
NlaIII	CATG	4 cut(s)	22, 82, 139, 350
NlaIV	GGNNCC	3 cut(s)	24, 238, 293
NspI	RCATGY	1 cut(s)	82
PciI	ACATGT	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	338, 465
PscI	ACATGT	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	24, 238, 293
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	150, 238, 256
RsaNI	GTAC	3 cut(s)	149, 237, 255
SaqAI	TTAA	2 cut(s)	153, 475
SatI	GCNGC	2 cut(s)	337, 464
Sau3AI	GATC	3 cut(s)	22, 120, 260
ScaI	AGTACT	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	86, 296
SetI	ASST	3 cut(s)	293, 412, 423
SfaNI	GCATC	2 cut(s)	373, 450
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	157, 471
SsiI	CCGC	3 cut(s)	48, 390, 440
SspMI	CTAG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	229, 245
TasI	AATT	2 cut(s)	157, 471
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	153, 475
Tru9I	TTAA	2 cut(s)	153, 475
TscAI	CASTG	1 cut(s)	338
TseI	GCWGC	2 cut(s)	336, 463
TspRI	CASTG	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	152
XapI	RAATTY	2 cut(s)	157, 471
XceI	RCATGY	1 cut(s)	82
XspI	CTAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.