RLG00000026679

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002517
Physical Location & Seq
Forward (+)
4823256 .. 4823835
580 bp
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UTR
Exon/CDS
Intron
RLM00000026679

Sequence Viewer

Length: 312 bp
ATGGACTCGCCAAGAAACATGGACTGTCCTCCACCACTGTGTGCAAGAGGTTGCGGTTTCTTTGGGACTTCGGCAAACAGGAATATGTGCTCAAAGTGCTACACAGAGTATCTGAAGGAACAGCTTCTTGCGAAGCCTACTGCAGCGCCGGCCGTGGTGGCTTCAGTGAAAAAAACCCTAGACGTCACTGTTTCTGCTAGCGAGTCGTTGTCAACTACTACAACTACACTGATCAGCCATGTGGCTGAACGAGAGCTTTTGGCCAAGCAAAACCCAATTTGCAAGGGTGACAAGTTAGAGTATAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

104

Amino Acids

11.17

Weight (kDa)

8.57

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 13 - 34 5.6e-11 A20-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 2 cut(s) 150, 261
AcuI CTGAAG 2 cut(s) 134, 147
AcyI GRCGYC 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 41
AleI CACNNNNGTG 1 cut(s) 37
AluBI AGCT 2 cut(s) 124, 256
AluI AGCT 2 cut(s) 124, 256
Alw21I GWGCWC 1 cut(s) 92
AoxI GGCC 2 cut(s) 150, 261
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 197
BalI TGGCCA 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 137
BclI TGATCA 1 cut(s) 231
BfaI CTAG 2 cut(s) 179, 198
BfmI CTRYAG 1 cut(s) 141
BfoI RGCGCY 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmtI GCTAGC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 153
Bse118I RCCGGY 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 153
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 152, 263
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 152, 263
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 152, 263
BspMAI CTGCAG 1 cut(s) 145
BspOI GCTAGC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 183
Bst4CI ACNGT 3 cut(s) 26, 39, 190
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 150, 199
BstDSI CCRYGG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 3 cut(s) 96, 149, 158
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 155
BstZI CGGCCG 1 cut(s) 150
BsuRI GGCC 2 cut(s) 152, 263
BtgI CCRYGG 1 cut(s) 153
BtsIMutI CAGTG 4 cut(s) 35, 171, 186, 227
Cac8I GCNNGC 2 cut(s) 150, 199
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 148
CviAII CATG 2 cut(s) 19, 239
CviJI RGCY 8 cut(s) 124, 136, 152, 161, 237, 245, 256, 263
CviKI_1 RGCY 8 cut(s) 124, 136, 152, 161, 237, 245, 256, 263
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
DraIII CACNNNGTG 1 cut(s) 41
EaeI YGGCCR 2 cut(s) 150, 261
EagI CGGCCG 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 150
Eco52I CGGCCG 1 cut(s) 150
Eco57I CTGAAG 2 cut(s) 134, 147
FaeI CATG 2 cut(s) 22, 242
FaiI YATR 4 cut(s) 20, 86, 240, 303
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 18, 238
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 179, 198
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 2 cut(s) 152, 263
HapII CCGG 1 cut(s) 149
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 22, 242
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 2 cut(s) 5, 203
HpaII CCGG 1 cut(s) 149
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 3 cut(s) 26, 39, 190
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 44, 143, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 149, 158
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 22, 242
HspAI GCGC 1 cut(s) 146
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 2 cut(s) 64, 162
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 2 cut(s) 179, 198
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 184, 287
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 2 cut(s) 39, 41
Mox20I TGGCCA 1 cut(s) 263
MroNI GCCGGC 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 37
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 96, 149, 158
NaeI GCCGGC 1 cut(s) 150
NdeII GATC 1 cut(s) 231
NgoMIV GCCGGC 1 cut(s) 148
NheI GCTAGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 22, 242
NmuCI GTSAC 2 cut(s) 184, 287
OliI CACNNNNGTG 1 cut(s) 37
PdiI GCCGGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PstI CTGCAG 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 37
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 231
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 92
SetI ASST 4 cut(s) 52, 126, 186, 258
SfcI CTRYAG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 37
Sse9I AATT 1 cut(s) 276
SsiI CCGC 1 cut(s) 54
SspMI CTAG 2 cut(s) 179, 198
TaaI ACNGT 3 cut(s) 26, 39, 190
TaiI ACGT 1 cut(s) 186
TasI AATT 1 cut(s) 276
TscAI CASTG 4 cut(s) 42, 171, 193, 234
TseFI GTSAC 2 cut(s) 184, 287
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 184, 287
TspRI CASTG 4 cut(s) 42, 171, 193, 234
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 2 cut(s) 179, 198
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.