Inner membrane component of T3SS, cytoplasmic domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14490 |
| fragaria_vesca | FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 |
| malus_domestica | MD13G1205500.v1.1 MD16G1211500.v1.1 |
| prunus_persica | Prupe.1G033600_v2.0.a1 |
| pyrus_communis | pycom13g17820 pycom16g17730 |
| rosa_chinensis | RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291 |
| rosa_laevigata | RLG00000009886 |
| rosa_multiflora | Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00247360 Rroxscaffold_5G00336920 |
| rosa_rugosa | Rorug03G0334400 |
| rosa_samantha | Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500 |
| rosa_wichuraiana | Rw4G002710 Rw7G031100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 248 |
| AccI | GTMKAC | 1 cut(s) | 290 |
| AciI | CCGC | 1 cut(s) | 881 |
| AclWI | GGATC | 6 cut(s) | 82, 164, 205, 230, 543, 891 |
| AcsI | RAATTY | 4 cut(s) | 220, 307, 446, 640 |
| AcyI | GRCGYC | 2 cut(s) | 245, 358 |
| AfaI | GTAC | 1 cut(s) | 211 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 47 |
| AgsI | TTSAA | 8 cut(s) | 220, 572, 611, 658, 701, 898, 908, 959 |
| AjnI | CCWGG | 1 cut(s) | 70 |
| AluBI | AGCT | 5 cut(s) | 340, 558, 719, 903, 948 |
| AluI | AGCT | 5 cut(s) | 340, 558, 719, 903, 948 |
| Alw26I | GTCTC | 2 cut(s) | 236, 746 |
| AlwI | GGATC | 6 cut(s) | 82, 164, 205, 230, 543, 891 |
| ApoI | RAATTY | 4 cut(s) | 220, 307, 446, 640 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 576 |
| AspS9I | GGNCC | 1 cut(s) | 38 |
| AsuHPI | GGTGA | 2 cut(s) | 296, 316 |
| AsuII | TTCGAA | 1 cut(s) | 224 |
| AvaII | GGWCC | 1 cut(s) | 38 |
| BanII | GRGCYC | 1 cut(s) | 1083 |
| BccI | CCATC | 3 cut(s) | 19, 257, 515 |
| BceAI | ACGGC | 1 cut(s) | 877 |
| BciT130I | CCWGG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 2 cut(s) | 236, 746 |
| BfaI | CTAG | 4 cut(s) | 59, 281, 468, 777 |
| BglII | AGATCT | 2 cut(s) | 190, 988 |
| Bme1390I | CCNGG | 1 cut(s) | 72 |
| Bme18I | GGWCC | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 1 cut(s) | 38 |
| BmiI | GGNNCC | 1 cut(s) | 39 |
| BmrFI | CCNGG | 1 cut(s) | 72 |
| BmsI | GCATC | 2 cut(s) | 43, 157 |
| BpmI | CTGGAG | 1 cut(s) | 1049 |
| Bpu14I | TTCGAA | 1 cut(s) | 224 |
| BsaBI | GATNNNNATC | 1 cut(s) | 987 |
| BsaHI | GRCGYC | 2 cut(s) | 245, 358 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 47 |
| Bse3DI | GCAATG | 1 cut(s) | 633 |
| Bse8I | GATNNNNATC | 1 cut(s) | 987 |
| BseBI | CCWGG | 1 cut(s) | 72 |
| BseGI | GGATG | 1 cut(s) | 445 |
| BseJI | GATNNNNATC | 1 cut(s) | 987 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 47 |
| BseMI | GCAATG | 1 cut(s) | 633 |
| BseMII | CTCAG | 2 cut(s) | 411, 1112 |
| BseRI | GAGGAG | 1 cut(s) | 700 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 47 |
| BsmAI | GTCTC | 2 cut(s) | 236, 746 |
| BsmBI | CGTCTC | 1 cut(s) | 236 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| Bsp119I | TTCGAA | 1 cut(s) | 224 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1083 |
| Bsp143I | GATC | 9 cut(s) | 74, 156, 190, 197, 235, 535, 883, 988, 1123 |
| BspACI | CCGC | 1 cut(s) | 881 |
| BspCNI | CTCAG | 2 cut(s) | 412, 1111 |
| BspLI | GGNNCC | 1 cut(s) | 39 |
| BspPI | GGATC | 6 cut(s) | 82, 164, 205, 230, 543, 891 |
| BspQI | GCTCTTC | 1 cut(s) | 893 |
| BspT104I | TTCGAA | 1 cut(s) | 224 |
| BsrDI | GCAATG | 1 cut(s) | 633 |
| BssMI | GATC | 9 cut(s) | 74, 156, 190, 197, 235, 535, 883, 988, 1123 |
| BssNAI | GTATAC | 1 cut(s) | 291 |
| BssNI | GRCGYC | 2 cut(s) | 245, 358 |
| Bst1107I | GTATAC | 1 cut(s) | 291 |
| Bst2UI | CCWGG | 1 cut(s) | 72 |
| Bst4CI | ACNGT | 1 cut(s) | 209 |
| Bst6I | CTCTTC | 3 cut(s) | 656, 761, 893 |
| BstACI | GRCGYC | 2 cut(s) | 245, 358 |
| BstBI | TTCGAA | 1 cut(s) | 224 |
| BstDEI | CTNAG | 4 cut(s) | 144, 420, 992, 1098 |
| BstF5I | GGATG | 1 cut(s) | 445 |
| BstKTI | GATC | 9 cut(s) | 77, 159, 193, 200, 238, 538, 886, 991, 1126 |
| BstMAI | GTCTC | 2 cut(s) | 236, 746 |
| BstMBI | GATC | 9 cut(s) | 74, 156, 190, 197, 235, 535, 883, 988, 1123 |
| BstNI | CCWGG | 1 cut(s) | 72 |
| BstSCI | CCNGG | 1 cut(s) | 70 |
| BstX2I | RGATCY | 5 cut(s) | 74, 190, 197, 535, 988 |
| BstYI | RGATCY | 5 cut(s) | 74, 190, 197, 535, 988 |
| BstZ17I | GTATAC | 1 cut(s) | 291 |
| BtgZI | GCGATG | 2 cut(s) | 66, 282 |
| BtsCI | GGATG | 1 cut(s) | 445 |
| BtsIMutI | CAGTG | 1 cut(s) | 417 |
| Cfr13I | GGNCC | 1 cut(s) | 38 |
| CseI | GACGC | 2 cut(s) | 137, 347 |
| Csp6I | GTAC | 1 cut(s) | 210 |
| CviAII | CATG | 3 cut(s) | 835, 953, 1084 |
| CviQI | GTAC | 1 cut(s) | 210 |
| DdeI | CTNAG | 4 cut(s) | 144, 420, 992, 1098 |
| DpnI | GATC | 9 cut(s) | 76, 158, 192, 199, 237, 537, 885, 990, 1125 |
| DpnII | GATC | 9 cut(s) | 74, 156, 190, 197, 235, 535, 883, 988, 1123 |
| DraI | TTTAAA | 1 cut(s) | 759 |
| Eam1104I | CTCTTC | 3 cut(s) | 656, 761, 893 |
| EarI | CTCTTC | 3 cut(s) | 656, 761, 893 |
| Eco24I | GRGCYC | 1 cut(s) | 1083 |
| Eco32I | GATATC | 1 cut(s) | 415 |
| Eco47I | GGWCC | 1 cut(s) | 38 |
| EcoRI | GAATTC | 1 cut(s) | 220 |
| EcoRII | CCWGG | 1 cut(s) | 70 |
| EcoRV | GATATC | 1 cut(s) | 415 |
| EcoT38I | GRGCYC | 1 cut(s) | 1083 |
| Esp3I | CGTCTC | 1 cut(s) | 236 |
| FaeI | CATG | 3 cut(s) | 838, 956, 1087 |
| FaiI | YATR | 8 cut(s) | 291, 836, 954, 968, 1073, 1085, 1116, 1154 |
| FatI | CATG | 3 cut(s) | 834, 952, 1083 |
| FblI | GTMKAC | 1 cut(s) | 290 |
| FokI | GGATG | 1 cut(s) | 452 |
| FriOI | GRGCYC | 1 cut(s) | 1083 |
| FspBI | CTAG | 4 cut(s) | 59, 281, 468, 777 |
| GsuI | CTGGAG | 1 cut(s) | 1049 |
| HgaI | GACGC | 2 cut(s) | 137, 347 |
| Hin1I | GRCGYC | 2 cut(s) | 245, 358 |
| Hin1II | CATG | 3 cut(s) | 838, 956, 1087 |
| HindIII | AAGCTT | 3 cut(s) | 338, 556, 717 |
| HinfI | GANTC | 8 cut(s) | 82, 96, 135, 161, 167, 497, 815, 926 |
| HphI | GGTGA | 2 cut(s) | 296, 316 |
| Hpy166II | GTNNAC | 2 cut(s) | 291, 595 |
| Hpy188I | TCNGA | 8 cut(s) | 156, 166, 260, 502, 582, 888, 1101, 1123 |
| Hpy188III | TCNNGA | 7 cut(s) | 59, 233, 239, 329, 930, 1028, 1109 |
| Hpy8I | GTNNAC | 2 cut(s) | 291, 595 |
| Hpy99I | CGWCG | 1 cut(s) | 250 |
| HpyAV | CCTTC | 2 cut(s) | 41, 739 |
| HpyCH4III | ACNGT | 1 cut(s) | 209 |
| HpyCH4IV | ACGT | 1 cut(s) | 245 |
| HpyCH4V | TGCA | 1 cut(s) | 626 |
| HpyF3I | CTNAG | 4 cut(s) | 144, 420, 992, 1098 |
| HpySE526I | ACGT | 1 cut(s) | 245 |
| Hsp92I | GRCGYC | 2 cut(s) | 245, 358 |
| Hsp92II | CATG | 3 cut(s) | 838, 956, 1087 |
| Kzo9I | GATC | 9 cut(s) | 74, 156, 190, 197, 235, 535, 883, 988, 1123 |
| LguI | GCTCTTC | 1 cut(s) | 893 |
| LmnI | GCTCC | 2 cut(s) | 687, 1010 |
| LweI | GCATC | 2 cut(s) | 43, 157 |
| MaeI | CTAG | 4 cut(s) | 59, 281, 468, 777 |
| MaeII | ACGT | 1 cut(s) | 245 |
| MaeIII | GTNAC | 2 cut(s) | 4, 919 |
| MalI | GATC | 9 cut(s) | 76, 158, 192, 199, 237, 537, 885, 990, 1125 |
| MboI | GATC | 9 cut(s) | 74, 156, 190, 197, 235, 535, 883, 988, 1123 |
| MflI | RGATCY | 5 cut(s) | 74, 190, 197, 535, 988 |
| MhlI | GDGCHC | 1 cut(s) | 1083 |
| MmeI | TCCRAC | 2 cut(s) | 228, 790 |
| MroXI | GAANNNNTTC | 1 cut(s) | 576 |
| MseI | TTAA | 6 cut(s) | 123, 599, 603, 735, 758, 944 |
| MspR9I | CCNGG | 1 cut(s) | 72 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| MvaI | CCWGG | 1 cut(s) | 72 |
| NdeII | GATC | 9 cut(s) | 74, 156, 190, 197, 235, 535, 883, 988, 1123 |
| NlaIII | CATG | 3 cut(s) | 838, 956, 1087 |
| NlaIV | GGNNCC | 1 cut(s) | 39 |
| NmeAIII | GCCGAG | 1 cut(s) | 486 |
| NspV | TTCGAA | 1 cut(s) | 224 |
| PacI | TTAATTAA | 1 cut(s) | 603 |
| PciSI | GCTCTTC | 1 cut(s) | 893 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 91, 100, 264 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PdmI | GAANNNNTTC | 1 cut(s) | 576 |
| PfeI | GAWTC | 8 cut(s) | 82, 96, 135, 161, 167, 497, 815, 926 |
| Psp6I | CCWGG | 1 cut(s) | 70 |
| PspGI | CCWGG | 1 cut(s) | 70 |
| PspN4I | GGNNCC | 1 cut(s) | 39 |
| PspPI | GGNCC | 1 cut(s) | 38 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 568, 600 |
| PsuI | RGATCY | 5 cut(s) | 74, 190, 197, 535, 988 |
| RsaI | GTAC | 1 cut(s) | 211 |
| RsaNI | GTAC | 1 cut(s) | 210 |
| SapI | GCTCTTC | 1 cut(s) | 893 |
| SaqAI | TTAA | 6 cut(s) | 123, 599, 603, 735, 758, 944 |
| Sau3AI | GATC | 9 cut(s) | 74, 156, 190, 197, 235, 535, 883, 988, 1123 |
| Sau96I | GGNCC | 1 cut(s) | 38 |
| ScrFI | CCNGG | 1 cut(s) | 72 |
| SduI | GDGCHC | 1 cut(s) | 1083 |
| SfaNI | GCATC | 2 cut(s) | 43, 157 |
| SfuI | TTCGAA | 1 cut(s) | 224 |
| SinI | GGWCC | 1 cut(s) | 38 |
| SsiI | CCGC | 1 cut(s) | 881 |
| SspMI | CTAG | 4 cut(s) | 59, 281, 468, 777 |
| StyD4I | CCNGG | 1 cut(s) | 70 |
| TaaI | ACNGT | 1 cut(s) | 209 |
| TaiI | ACGT | 1 cut(s) | 248 |
| TaqI | TCGA | 5 cut(s) | 94, 159, 224, 492, 847 |
| TfiI | GAWTC | 8 cut(s) | 82, 96, 135, 161, 167, 497, 815, 926 |
| Tru1I | TTAA | 6 cut(s) | 123, 599, 603, 735, 758, 944 |
| Tru9I | TTAA | 6 cut(s) | 123, 599, 603, 735, 758, 944 |
| TscAI | CASTG | 1 cut(s) | 424 |
| TspDTI | ATGAA | 4 cut(s) | 126, 576, 983, 990 |
| TspRI | CASTG | 1 cut(s) | 424 |
| VpaK11BI | GGWCC | 1 cut(s) | 38 |
| XapI | RAATTY | 4 cut(s) | 220, 307, 446, 640 |
| XbaI | TCTAGA | 1 cut(s) | 58 |
| XmiI | GTMKAC | 1 cut(s) | 290 |
| XmnI | GAANNNNTTC | 1 cut(s) | 576 |
| XspI | CTAG | 4 cut(s) | 59, 281, 468, 777 |
| ZraI | GACGTC | 1 cut(s) | 246 |