RLG00000009886

FHA domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
59558237 .. 59563065
4829 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009886

Sequence Viewer

Length: 1407 bp
ATGGAGCCTTTAGCTCTCAAGCTCGAGATGCTCAAAGGCCCCCGTGAGGGAGAGACCCTAGAGTACCGACCCGGATCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCCCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCGACTCCTCCGAATCGGGGCAATGGATGATTCGAGACCTCGACTCCTCCAACGGAACCATCGTAAACGGCACCAAGCTCAAGCCGGACACGCCGTTGGAGCTGAGCGACGGAGACGAGATCAAGATCGGGGAGTACACGTCGATCTCCGTCAAGATCGACGGCCACGAAGGGAGCAGGTTGAGAAGAAGGAATCCGAGGCGTGGCGCGGCGGGGAAGGTGGGGACGGTTGCGGAGAGTCGGGGCCGGAGAGGGAGGGTTAAGAAGGAGAGTGAGGTCGAAGTGAAATTGGAGGTGGAGATTGAGAATGATGAGGAAATTGGTGTAGCAGCACCGGTTGCTGAGAATCAGGGCCGGAGAGGTAGGCCTGCGAAGAAGAAGGAAGAGAATTCTGAATTGGAGAAAGAGGGAGAGGAAATTGAGGTGGTGGAGAAGCCAAAGAGGGGCCGGGGCCGGCCGAGGAAAGCTAGGGTTTTGAAGAGTGAGGATTTGGTGGAGGAGGTTGCTGTGCCGGAAGTGAGTTCAAGAGCAACTCAAAGGTGTAAGGATGCGGAAGCTGTGGTTCCGGATTCGGAGAATTGCAGTGTAGAGTGTGAACAAGTGAAGATTGAACCTAAGAGGCGTGGTGGTGTTAGGAAGAGGAAGAATGTGCAAGAAGTGCCGCGGGTGTGTGAAGAAGGTAATGTTGCGGCGGAGAAAGATTTGGAAGAAATTGGTCCAGTTGGTGTTCATGGCGATAACGATGATAAAGGGGATGTTCCGGAGCAGAAGGATTCGGGGGAAATAGGTCCAGTAGATATCAAGGAGAATGGCGTGTATGATGATGATGCTAAAGGGTTGAATTTGGGGGATGAAGAGGCAGCAATCAGTTTTGATGTGGGAGAGAGTGGCAATGATAATGAGAAGGCAAAAGGGTCCAATTTGGGCCATGAAGAGGCAGCCATTGACTGTAATGTTGGAGAGAGTGGCGATAAGGTTGGAAGTGGTAGTAGGAGCTGTTTTAGTGTTAGTGGTGCTAAGGATGTTGATAAAAAGGGGACTGATTCTGGTGTTAAAGAAGGTTTGAGAAAGGTTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGACGATTGGTTTGATTATGTGGAAGTTTCTTTGCCGAAAGCAGTTAATGATGAGATTGACAAGATTTGTTCCGGAATGAGAGAGAAGGCTAAGCTAGTCCAGGAGTATATAGCAAAACACAAGAAGGAGAAGTGTCAAAGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

51.3

Weight (kDa)

5.16

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 9 - 97 1.9e-08 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 28 - 96 3.6e-18 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 3 cut(s) 105, 365, 820
AccIII TCCGGA 3 cut(s) 721, 916, 1334
AclWI GGATC 2 cut(s) 69, 82
AcoI YGGCCR 3 cut(s) 91, 319, 611
AcsI RAATTY 2 cut(s) 544, 997
AfaI GTAC 2 cut(s) 65, 293
AfiI CCNNNNNNNGG 6 cut(s) 46, 47, 174, 359, 599, 1090
AflIII ACRYGT 1 cut(s) 294
AgeI ACCGGT 1 cut(s) 490
AgsI TTSAA 4 cut(s) 634, 681, 767, 997
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 1362
AjuI GAANNNNNNNTTGG 4 cut(s) 536, 568, 1244, 1276
AluBI AGCT 8 cut(s) 14, 22, 235, 259, 623, 713, 1152, 1357
AluI AGCT 8 cut(s) 14, 22, 235, 259, 623, 713, 1152, 1357
Alw26I GTCTC 3 cut(s) 47, 186, 264
AlwI GGATC 2 cut(s) 69, 82
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 3 cut(s) 721, 916, 1334
ApeKI GCWGC 3 cut(s) 485, 1016, 1094
ApoI RAATTY 2 cut(s) 544, 997
ArsI GACNNNNNNTTYG 2 cut(s) 1256, 1288
AsiGI ACCGGT 1 cut(s) 490
AspLEI GCGC 1 cut(s) 365
AsuC2I CCSGG 3 cut(s) 72, 95, 605
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 4 cut(s) 82, 872, 944, 1071
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 497, 1028, 1106
BccI CCATC 2 cut(s) 128, 224
BceAI ACGGC 3 cut(s) 235, 241, 334
BciT130I CCWGG 1 cut(s) 1364
BcnI CCSGG 3 cut(s) 72, 95, 605
BcoDI GTCTC 3 cut(s) 47, 186, 264
BfaI CTAG 3 cut(s) 59, 624, 1358
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 7 cut(s) 106, 366, 486, 818, 846, 1017, 1095
BlpI GCTNAGC 2 cut(s) 260, 1353
BlsI GCNGC 7 cut(s) 107, 367, 487, 819, 847, 1018, 1096
Bme1390I CCNGG 4 cut(s) 72, 95, 605, 1364
Bme18I GGWCC 4 cut(s) 82, 872, 944, 1071
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 297
BmrFI CCNGG 4 cut(s) 72, 95, 605, 1364
BmsI GCATC 3 cut(s) 18, 694, 973
Bpu10I CCTNAGC 1 cut(s) 1173
Bpu1102I GCTNAGC 2 cut(s) 260, 1353
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 3 cut(s) 72, 95, 605
BsaBI GATNNNNATC 1 cut(s) 281
BsaI GGTCTC 2 cut(s) 47, 186
BsaJI CCNNGG 6 cut(s) 78, 103, 353, 604, 614, 818
BsaWI WCCGGW 4 cut(s) 490, 721, 916, 1334
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 281, 311
Bsc4I CCNNNNNNNGG 6 cut(s) 46, 47, 174, 359, 599, 1090
Bse118I RCCGGY 2 cut(s) 490, 609
Bse1I ACTGG 2 cut(s) 875, 947
Bse3DI GCAATG 2 cut(s) 185, 1054
Bse8I GATNNNNATC 1 cut(s) 281
BseAI TCCGGA 3 cut(s) 721, 916, 1334
BseBI CCWGG 1 cut(s) 1364
BseDI CCNNGG 6 cut(s) 78, 103, 353, 604, 614, 818
BseGI GGATG 5 cut(s) 189, 709, 916, 1012, 1183
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 6 cut(s) 46, 47, 174, 359, 599, 1090
BseMI GCAATG 2 cut(s) 185, 1054
BseMII CTCAG 2 cut(s) 251, 489
BseNI ACTGG 2 cut(s) 875, 947
BseRI GAGGAG 3 cut(s) 154, 193, 668
BseX3I CGGCCG 2 cut(s) 91, 611
BseXI GCAGC 3 cut(s) 497, 1028, 1106
Bsh1236I CGCG 3 cut(s) 105, 365, 820
Bsh1285I CGRYCG 2 cut(s) 94, 614
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 490
BsiEI CGRYCG 2 cut(s) 94, 614
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 394, 1207
BslI CCNNNNNNNGG 6 cut(s) 46, 47, 174, 359, 599, 1090
BsmAI GTCTC 3 cut(s) 47, 186, 264
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 394, 1207
Bso31I GGTCTC 2 cut(s) 47, 186
BsoBI CYCGRG 1 cut(s) 23
Bsp13I TCCGGA 3 cut(s) 721, 916, 1334
Bsp143I GATC 5 cut(s) 74, 276, 282, 300, 312
Bsp1720I GCTNAGC 2 cut(s) 260, 1353
BspCNI CTCAG 2 cut(s) 252, 490
BspEI TCCGGA 3 cut(s) 721, 916, 1334
BspFNI CGCG 3 cut(s) 105, 365, 820
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 2 cut(s) 69, 82
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 47, 186
BsrDI GCAATG 2 cut(s) 185, 1054
BsrFI RCCGGY 2 cut(s) 490, 609
BsrI ACTGG 2 cut(s) 875, 947
BssAI RCCGGY 2 cut(s) 490, 609
BssECI CCNNGG 6 cut(s) 78, 103, 353, 604, 614, 818
BssMI GATC 5 cut(s) 74, 276, 282, 300, 312
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 1364
Bst4CI ACNGT 2 cut(s) 385, 1106
Bst6I CTCTTC 5 cut(s) 534, 629, 788, 1005, 1083
BstAPI GCANNNNNTGC 2 cut(s) 494, 814
BstC8I GCNNGC 2 cut(s) 525, 611
BstDEI CTNAG 5 cut(s) 260, 498, 771, 1173, 1353
BstDSI CCRYGG 2 cut(s) 103, 818
BstF5I GGATG 5 cut(s) 189, 709, 916, 1012, 1183
BstFNI CGCG 3 cut(s) 105, 365, 820
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 5 cut(s) 77, 279, 285, 303, 315
BstMAI GTCTC 3 cut(s) 47, 186, 264
BstMBI GATC 5 cut(s) 74, 276, 282, 300, 312
BstMCI CGRYCG 2 cut(s) 94, 614
BstMWI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 494, 814
BstNI CCWGG 1 cut(s) 1364
BstSCI CCNGG 4 cut(s) 70, 93, 603, 1362
BstUI CGCG 3 cut(s) 105, 365, 820
BstV1I GCAGC 3 cut(s) 497, 1028, 1106
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BstZI CGGCCG 2 cut(s) 91, 611
BtgI CCRYGG 2 cut(s) 103, 818
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 5 cut(s) 189, 709, 916, 1012, 1183
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 1 cut(s) 745
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 525, 611
CfoI GCGC 1 cut(s) 365
Cfr10I RCCGGY 2 cut(s) 490, 609
Cfr42I CCGCGG 2 cut(s) 106, 821
Csp6I GTAC 2 cut(s) 64, 292
CspAI ACCGGT 1 cut(s) 490
CviAII CATG 2 cut(s) 887, 1085
CviQI GTAC 2 cut(s) 64, 292
DdeI CTNAG 5 cut(s) 260, 498, 771, 1173, 1353
DpnI GATC 5 cut(s) 76, 278, 284, 302, 314
DpnII GATC 5 cut(s) 74, 276, 282, 300, 312
EaeI YGGCCR 3 cut(s) 91, 319, 611
EagI CGGCCG 2 cut(s) 91, 611
Eam1104I CTCTTC 5 cut(s) 534, 629, 788, 1005, 1083
EarI CTCTTC 5 cut(s) 534, 629, 788, 1005, 1083
EciI GGCGGA 1 cut(s) 863
EclXI CGGCCG 2 cut(s) 91, 611
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 523
Eco31I GGTCTC 2 cut(s) 47, 186
Eco32I GATATC 1 cut(s) 955
Eco47I GGWCC 4 cut(s) 82, 872, 944, 1071
Eco52I CGGCCG 2 cut(s) 91, 611
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 1362
EcoRV GATATC 1 cut(s) 955
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 2 cut(s) 890, 1088
FaiI YATR 6 cut(s) 888, 975, 1086, 1281, 1371, 1373
FaqI GGGAC 2 cut(s) 394, 1207
FatI CATG 2 cut(s) 886, 1084
FauI CCCGC 2 cut(s) 361, 813
Fnu4HI GCNGC 7 cut(s) 106, 366, 486, 818, 846, 1017, 1095
FokI GGATG 5 cut(s) 196, 716, 923, 1019, 1190
FseI GGCCGGCC 1 cut(s) 613
Fsp4HI GCNGC 7 cut(s) 106, 366, 486, 818, 846, 1017, 1095
FspBI CTAG 3 cut(s) 59, 624, 1358
GlaI GCGC 1 cut(s) 364
GluI GCNGC 7 cut(s) 106, 366, 486, 818, 846, 1017, 1095
HhaI GCGC 1 cut(s) 365
Hin1II CATG 2 cut(s) 890, 1088
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
Hpy166II GTNNAC 3 cut(s) 223, 294, 752
Hpy188I TCNGA 5 cut(s) 86, 169, 354, 550, 730
Hpy188III TCNNGA 8 cut(s) 25, 191, 280, 310, 681, 722, 917, 1335
Hpy8I GTNNAC 3 cut(s) 223, 294, 752
Hpy99I CGWCG 3 cut(s) 269, 301, 320
HpyCH4III ACNGT 2 cut(s) 385, 1106
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 738, 808
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 494, 814
HpyF3I CTNAG 5 cut(s) 260, 498, 771, 1173, 1353
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 2 cut(s) 890, 1088
HspAI GCGC 1 cut(s) 363
Kpn2I TCCGGA 3 cut(s) 721, 916, 1334
KroI GCCGGC 1 cut(s) 609
KroNI GCCGGC 1 cut(s) 611
KspI CCGCGG 2 cut(s) 106, 821
Kzo9I GATC 5 cut(s) 74, 276, 282, 300, 312
LmnI GCTCC 6 cut(s) 4, 256, 330, 919, 1149, 1237
Lsp1109I GCAGC 3 cut(s) 497, 1028, 1106
LweI GCATC 3 cut(s) 18, 694, 973
MaeI CTAG 3 cut(s) 59, 624, 1358
MaeII ACGT 1 cut(s) 296
MalI GATC 5 cut(s) 76, 278, 284, 302, 314
MboI GATC 5 cut(s) 74, 276, 282, 300, 312
MflI RGATCY 1 cut(s) 74
MluCI AATT 9 cut(s) 443, 474, 544, 551, 573, 733, 867, 997, 1075
MlyI GAGTC 4 cut(s) 122, 155, 194, 403
MmeI TCCRAC 4 cut(s) 231, 234, 1093, 1114
MroI TCCGGA 3 cut(s) 721, 916, 1334
MroNI GCCGGC 1 cut(s) 609
MseI TTAA 4 cut(s) 417, 1209, 1308, 1405
MspA1I CMGCKG 2 cut(s) 105, 820
MspR9I CCNGG 4 cut(s) 72, 95, 605, 1364
MvaI CCWGG 1 cut(s) 1364
MvnI CGCG 3 cut(s) 105, 365, 820
MwoI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 494, 814
NaeI GCCGGC 1 cut(s) 611
NciI CCSGG 3 cut(s) 72, 95, 605
NdeII GATC 5 cut(s) 74, 276, 282, 300, 312
NgoMIV GCCGGC 1 cut(s) 609
NlaIII CATG 2 cut(s) 890, 1088
NmeAIII GCCGAG 1 cut(s) 639
PaeR7I CTCGAG 1 cut(s) 23
PceI AGGCCT 1 cut(s) 523
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 165, 216, 321
PdiI GCCGGC 1 cut(s) 611
PfeI GAWTC 8 cut(s) 87, 170, 187, 349, 502, 725, 929, 1199
PfoI TCCNGGA 1 cut(s) 1362
PinAI ACCGGT 1 cut(s) 490
PkrI GCNGC 7 cut(s) 107, 367, 487, 819, 847, 1018, 1096
PleI GAGTC 4 cut(s) 122, 155, 194, 402
PpsI GAGTC 4 cut(s) 122, 155, 194, 402
Psp6I CCWGG 1 cut(s) 1362
PspGI CCWGG 1 cut(s) 1362
PsuI RGATCY 1 cut(s) 74
RigI GGCCGGCC 1 cut(s) 613
RsaI GTAC 2 cut(s) 65, 293
RsaNI GTAC 2 cut(s) 64, 292
SacII CCGCGG 2 cut(s) 106, 821
SaqAI TTAA 4 cut(s) 417, 1209, 1308, 1405
SatI GCNGC 7 cut(s) 106, 366, 486, 818, 846, 1017, 1095
Sau3AI GATC 5 cut(s) 74, 276, 282, 300, 312
SchI GAGTC 4 cut(s) 122, 155, 194, 403
ScrFI CCNGG 4 cut(s) 72, 95, 605, 1364
SfaNI GCATC 3 cut(s) 18, 694, 973
Sfr274I CTCGAG 1 cut(s) 23
Sfr303I CCGCGG 2 cut(s) 106, 821
SgrBI CCGCGG 2 cut(s) 106, 821
SinI GGWCC 4 cut(s) 82, 872, 944, 1071
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 3 cut(s) 17, 23, 236
SmoI CTYRAG 3 cut(s) 17, 23, 236
Sse9I AATT 9 cut(s) 443, 474, 544, 551, 573, 733, 867, 997, 1075
SseBI AGGCCT 1 cut(s) 523
SspMI CTAG 3 cut(s) 59, 624, 1358
StuI AGGCCT 1 cut(s) 523
StyD4I CCNGG 4 cut(s) 70, 93, 603, 1362
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 385, 1106
TaiI ACGT 1 cut(s) 299
TaqI TCGA 7 cut(s) 24, 159, 190, 198, 299, 315, 435
TasI AATT 9 cut(s) 443, 474, 544, 551, 573, 733, 867, 997, 1075
TatI WGTACW 1 cut(s) 291
TauI GCSGC 4 cut(s) 108, 368, 820, 848
TfiI GAWTC 8 cut(s) 87, 170, 187, 349, 502, 725, 929, 1199
Tru1I TTAA 4 cut(s) 417, 1209, 1308, 1405
Tru9I TTAA 4 cut(s) 417, 1209, 1308, 1405
TscAI CASTG 1 cut(s) 745
TseI GCWGC 3 cut(s) 485, 1016, 1094
TspDTI ATGAA 3 cut(s) 875, 1023, 1101
TspGWI ACGGA 3 cut(s) 225, 282, 295
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 4 cut(s) 82, 872, 944, 1071
XapI RAATTY 2 cut(s) 544, 997
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 3 cut(s) 59, 624, 1358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.