Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009005.1

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Reverse (-)

22863 .. 23237

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009005.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgtgtgagaaagataatgttgtgggagagagtggcaatgatagtgagaattcgggccatgcagaggcagccactgactgtaatgttggagtgggtggcgatgaggttgaaagtggtagtaggagctgttttggtgctaagaatgttgataaaaaggggaatggttctggtgttaaacaaggttgtttgggaaagatttggcaggagccagatttggagaagatgactttggatgattggttttattatgtgcaagtttctttgccgataggggttaatgatgagattgacaagatttgtgccggaatgagacacaaggctaagctagtccacgagtatatagcacaacacaacaaggacaagtgtcacagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

124

Amino Acids

13.46

Weight (kDa)

5.12

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	126, 325
AluI	AGCT	2 cut(s)	126, 325
Alw26I	GTCTC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	326
BisI	GCNGC	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	207
BoxI	GACNNNNGTC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	57
Bsp1720I	GCTNAGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	43
BssSI	CACGAG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	80, 371
BstDEI	CTNAG	2 cut(s)	138, 321
BstF5I	GGATG	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstPAI	GACNNNNGTC	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	6 cut(s)	57, 71, 126, 208, 320, 325
CviKI_1	RGCY	6 cut(s)	57, 71, 126, 208, 320, 325
DdeI	CTNAG	2 cut(s)	138, 321
EcoRI	GAATTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	62
FaiI	YATR	4 cut(s)	60, 249, 339, 341
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	1 cut(s)	62
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	80, 371
HpyCH4V	TGCA	2 cut(s)	62, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	138, 321
Hsp92II	CATG	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	123, 205
LpnPI	CCDG	4 cut(s)	153, 188, 222, 316
Lsp1109I	GCAGC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	365
MboII	GAAGA	1 cut(s)	232
MluCI	AATT	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	58, 97
MseI	TTAA	3 cut(s)	174, 276, 373
MspI	CCGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	68
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	70
PshAI	GACNNNNGTC	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	174, 276, 373
SatI	GCNGC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	55
SetI	ASST	4 cut(s)	108, 128, 184, 327
Sse9I	AATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	80, 371
TasI	AATT	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	174, 276, 373
Tru9I	TTAA	3 cut(s)	174, 276, 373
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	365
TspRI	CASTG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	49
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.