Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Forward (+)

29059665 .. 29060677

Gene Structure 1013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTGGAGCCTTTAGCAGCTCTCAAGCTCGAAGTGCTCAAAGGCCCCCGTGAGGGAGAAACCCTAGAGTACCGACCCAGATCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCGCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCCACTCCGACTCCGAATCTGGTAAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCGTCGTAAACGACACCAAGCTCAAGCCGGACACGCCGCTGGAGCTGAACGACGGCGACGAGATCAAGATCGGGGAGTACACGTCGATCTCCGTCCACATCGACGGCCACAGGTTGAGAAGGAATCCGAGGCGCGGCGCGGCTGTGGAGAATTCTGAATTGGAGAGAGAGGGAGAGGAAATTGAGGTGGTAGAGAAGCCGAAGAGGGGCCGGGGCCGGCCGAGGGGGGTTTTGAAGAGTGAGGATTTGGTGGAGGAAGTGGCTGTGGTTCCGGATTCGGAGACTTGCAGTGAACAAGTGAAGATTGAACCTAAGAGGCGTGGTGAGGGGAGGAAGAGGAAGAATGTGCAACAAGTGCCGCTCATGTGTGAGAAAGATAATGTTGTTGTGGGAGAGAGTGGCAATGATAGTGAGAAGGCAAAAGGGTCCAATTCGGGCCATGAACAGGCAGCCACTGACTGTAATGTTGGAGTGGGTGGCGATGAGGTTGAAAGTGGTAGTAGGAGCTGTTTTGGTGTTAGTGGTGCTAAGAATGTTGATAAAAAGGGGAATGGTTTTGGTGTTAAACAAGGTTGTTTGGGAAAGATTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGATGATTGGTTTTATTATGTGCAAGTTTCTTTGCCGATAGGGGTTAATGATGAGATTAACAAGATTTGTGCCGGAATTAGACACAAGGCTAAGCTAGTCCAGGAGTATATAGCACAACACAACAAGGACAAGTGTCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

328

Amino Acids

36.21

Weight (kDa)

6.3

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	11 - 101	1.2e-09	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	30 - 99	7.6e-18	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	583
AccII	CGCG	3 cut(s)	111, 357, 362
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	6 cut(s)	109, 111, 260, 357, 362, 581
AclWI	GGATC	2 cut(s)	75, 190
AcoI	YGGCCR	3 cut(s)	97, 328, 440
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	2 cut(s)	71, 302
AfiI	CCNNNNNNNGG	6 cut(s)	52, 53, 356, 428, 445, 667
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	457, 530, 713
AjiI	CACGTC	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	942
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 397, 824, 856
AluBI	AGCT	6 cut(s)	20, 28, 244, 268, 729, 937
AluI	AGCT	6 cut(s)	20, 28, 244, 268, 729, 937
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	195, 497
AlwI	GGATC	2 cut(s)	75, 190
AlwNI	CAGNNNCTG	1 cut(s)	677
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	7 cut(s)	43, 97, 328, 430, 436, 440, 658
ApeKI	GCWGC	2 cut(s)	17, 671
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	357, 362
AspS9I	GGNCC	6 cut(s)	44, 88, 430, 436, 648, 658
AsuC2I	CCSGG	2 cut(s)	101, 434
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	88, 648
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	29, 683
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	292, 343
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	944
BcnI	CCSGG	2 cut(s)	101, 434
BcoDI	GTCTC	2 cut(s)	195, 497
BfaI	CTAG	2 cut(s)	65, 938
BisI	GCNGC	7 cut(s)	18, 112, 260, 358, 363, 581, 672
BlpI	GCTNAGC	1 cut(s)	933
BlsI	GCNGC	7 cut(s)	19, 113, 261, 359, 364, 582, 673
Bme1390I	CCNGG	3 cut(s)	101, 434, 944
Bme18I	GGWCC	2 cut(s)	88, 648
BmgBI	CACGTC	1 cut(s)	306
BmgT120I	GGNCC	6 cut(s)	44, 88, 430, 436, 648, 658
BmiI	GGNNCC	8 cut(s)	9, 46, 223, 431, 437, 492, 649, 819
BmrFI	CCNGG	3 cut(s)	101, 434, 944
BoxI	GACNNNNGTC	1 cut(s)	975
BpmI	CTGGAG	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	2 cut(s)	8, 230
BpuMI	CCSGG	2 cut(s)	101, 434
BsaBI	GATNNNNATC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	5 cut(s)	84, 109, 350, 433, 443
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	6 cut(s)	158, 188, 194, 224, 290, 320
Bsc4I	CCNNNNNNNGG	6 cut(s)	52, 53, 356, 428, 445, 667
Bse118I	RCCGGY	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	631
Bse8I	GATNNNNATC	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	944
BseDI	CCNNGG	5 cut(s)	84, 109, 350, 433, 443
BseGI	GGATG	3 cut(s)	162, 198, 850
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	6 cut(s)	52, 53, 356, 428, 445, 667
BseMI	GCAATG	1 cut(s)	631
BseRI	GAGGAG	1 cut(s)	202
BseX3I	CGGCCG	2 cut(s)	97, 440
BseXI	GCAGC	2 cut(s)	29, 683
Bsh1236I	CGCG	3 cut(s)	111, 357, 362
Bsh1285I	CGRYCG	2 cut(s)	100, 443
BshFI	GGCC	7 cut(s)	45, 99, 330, 432, 438, 442, 660
BsiEI	CGRYCG	2 cut(s)	100, 443
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	7 cut(s)	100, 138, 251, 433, 439, 494, 915
BslI	CCNNNNNNNGG	6 cut(s)	52, 53, 356, 428, 445, 667
BsmAI	GTCTC	2 cut(s)	195, 497
BsnI	GGCC	7 cut(s)	45, 99, 330, 432, 438, 442, 660
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	5 cut(s)	80, 195, 285, 291, 309
Bsp1720I	GCTNAGC	1 cut(s)	933
BspACI	CCGC	6 cut(s)	109, 111, 260, 357, 362, 581
BspANI	GGCC	7 cut(s)	45, 99, 330, 432, 438, 442, 660
BspEI	TCCGGA	1 cut(s)	493
BspFNI	CGCG	3 cut(s)	111, 357, 362
BspLI	GGNNCC	8 cut(s)	9, 46, 223, 431, 437, 492, 649, 819
BspPI	GGATC	2 cut(s)	75, 190
BspTNI	GGTCTC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	631
BsrFI	RCCGGY	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	5 cut(s)	84, 109, 350, 433, 443
BssMI	GATC	5 cut(s)	80, 195, 285, 291, 309
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	944
Bst4CI	ACNGT	3 cut(s)	226, 683, 983
Bst6I	CTCTTC	3 cut(s)	419, 452, 551
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	3 cut(s)	534, 750, 933
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	3 cut(s)	162, 198, 850
BstFNI	CGCG	3 cut(s)	111, 357, 362
BstHHI	GCGC	2 cut(s)	357, 362
BstKTI	GATC	5 cut(s)	83, 198, 288, 294, 312
BstMAI	GTCTC	2 cut(s)	195, 497
BstMBI	GATC	5 cut(s)	80, 195, 285, 291, 309
BstMCI	CGRYCG	2 cut(s)	100, 443
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 256, 265, 577
BstNI	CCWGG	1 cut(s)	944
BstPAI	GACNNNNGTC	1 cut(s)	975
BstSCI	CCNGG	3 cut(s)	99, 432, 942
BstUI	CGCG	3 cut(s)	111, 357, 362
BstV1I	GCAGC	2 cut(s)	29, 683
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BstZI	CGGCCG	2 cut(s)	97, 440
BsuRI	GGCC	7 cut(s)	45, 99, 330, 432, 438, 442, 660
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	717
BtrI	CACGTC	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	162, 198, 850
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	517, 675
Cac8I	GCNNGC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	2 cut(s)	357, 362
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	6 cut(s)	44, 88, 430, 436, 648, 658
Cfr42I	CCGCGG	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	70, 301
CviAII	CATG	2 cut(s)	586, 662
CviQI	GTAC	2 cut(s)	70, 301
DdeI	CTNAG	3 cut(s)	534, 750, 933
DpnI	GATC	5 cut(s)	82, 197, 287, 293, 311
DpnII	GATC	5 cut(s)	80, 195, 285, 291, 309
EaeI	YGGCCR	3 cut(s)	97, 328, 440
EagI	CGGCCG	2 cut(s)	97, 440
Eam1104I	CTCTTC	3 cut(s)	419, 452, 551
EarI	CTCTTC	3 cut(s)	419, 452, 551
EclXI	CGGCCG	2 cut(s)	97, 440
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	88, 648
Eco52I	CGGCCG	2 cut(s)	97, 440
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	942
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	589, 665
FaiI	YATR	5 cut(s)	587, 663, 861, 951, 953
FatI	CATG	2 cut(s)	585, 661
Fnu4HI	GCNGC	7 cut(s)	18, 112, 260, 358, 363, 581, 672
FokI	GGATG	3 cut(s)	149, 205, 857
FseI	GGCCGGCC	1 cut(s)	442
Fsp4HI	GCNGC	7 cut(s)	18, 112, 260, 358, 363, 581, 672
FspBI	CTAG	2 cut(s)	65, 938
GlaI	GCGC	2 cut(s)	356, 361
GluI	GCNGC	7 cut(s)	18, 112, 260, 358, 363, 581, 672
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	7 cut(s)	45, 99, 330, 432, 438, 442, 660
HapII	CCGG	7 cut(s)	100, 138, 251, 433, 439, 494, 915
HhaI	GCGC	2 cut(s)	357, 362
Hin1II	CATG	2 cut(s)	589, 665
Hin6I	GCGC	2 cut(s)	355, 360
HinP1I	GCGC	2 cut(s)	355, 360
HinfI	GANTC	7 cut(s)	93, 134, 173, 179, 209, 346, 497
HpaII	CCGG	7 cut(s)	100, 138, 251, 433, 439, 494, 915
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	4 cut(s)	232, 303, 319, 515
Hpy188I	TCNGA	7 cut(s)	92, 172, 178, 200, 351, 379, 502
Hpy188III	TCNNGA	2 cut(s)	289, 494
Hpy8I	GTNNAC	4 cut(s)	232, 303, 319, 515
Hpy99I	CGWCG	5 cut(s)	230, 278, 284, 310, 329
HpyAV	CCTTC	2 cut(s)	336, 631
HpyCH4III	ACNGT	3 cut(s)	226, 683, 983
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	3 cut(s)	510, 571, 865
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 256, 265, 577
HpyF3I	CTNAG	3 cut(s)	534, 750, 933
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	589, 665
HspAI	GCGC	2 cut(s)	355, 360
Kpn2I	TCCGGA	1 cut(s)	493
KroI	GCCGGC	1 cut(s)	438
KroNI	GCCGGC	1 cut(s)	440
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	80, 195, 285, 291, 309
LmnI	GCTCC	4 cut(s)	7, 265, 726, 817
Lsp1109I	GCAGC	2 cut(s)	29, 683
MaeI	CTAG	2 cut(s)	65, 938
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	977
MalI	GATC	5 cut(s)	82, 197, 287, 293, 311
MbiI	CCGCTC	1 cut(s)	583
MboI	GATC	5 cut(s)	80, 195, 285, 291, 309
MboII	GAAGA	6 cut(s)	436, 469, 535, 568, 574, 844
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	5 cut(s)	373, 380, 402, 652, 918
MlyI	GAGTC	3 cut(s)	128, 167, 203
MmeI	TCCRAC	3 cut(s)	195, 240, 670
MroI	TCCGGA	1 cut(s)	493
MroNI	GCCGGC	1 cut(s)	438
MseI	TTAA	4 cut(s)	786, 888, 900, 985
MspA1I	CMGCKG	2 cut(s)	111, 262
MspI	CCGG	7 cut(s)	100, 138, 251, 433, 439, 494, 915
MspR9I	CCNGG	3 cut(s)	101, 434, 944
MteI	GCGCNGCGC	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	944
MvnI	CGCG	3 cut(s)	111, 357, 362
MwoI	GCNNNNNNNGC	4 cut(s)	34, 256, 265, 577
NaeI	GCCGGC	1 cut(s)	440
NciI	CCSGG	2 cut(s)	101, 434
NdeII	GATC	5 cut(s)	80, 195, 285, 291, 309
NgoMIV	GCCGGC	1 cut(s)	438
NlaIII	CATG	2 cut(s)	589, 665
NlaIV	GGNNCC	8 cut(s)	9, 46, 223, 431, 437, 492, 649, 819
NmeAIII	GCCGAG	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	977
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 225, 279
PdiI	GCCGGC	1 cut(s)	440
PfeI	GAWTC	4 cut(s)	93, 179, 346, 497
PfoI	TCCNGGA	1 cut(s)	942
PkrI	GCNGC	7 cut(s)	19, 113, 261, 359, 364, 582, 673
PleI	GAGTC	3 cut(s)	128, 167, 203
PpsI	GAGTC	3 cut(s)	128, 167, 203
PshAI	GACNNNNGTC	1 cut(s)	975
Psp6I	CCWGG	1 cut(s)	942
PspGI	CCWGG	1 cut(s)	942
PspN4I	GGNNCC	8 cut(s)	9, 46, 223, 431, 437, 492, 649, 819
PspPI	GGNCC	6 cut(s)	44, 88, 430, 436, 648, 658
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	80
RigI	GGCCGGCC	1 cut(s)	442
RsaI	GTAC	2 cut(s)	71, 302
RsaNI	GTAC	2 cut(s)	70, 301
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	4 cut(s)	786, 888, 900, 985
SatI	GCNGC	7 cut(s)	18, 112, 260, 358, 363, 581, 672
Sau3AI	GATC	5 cut(s)	80, 195, 285, 291, 309
Sau96I	GGNCC	6 cut(s)	44, 88, 430, 436, 648, 658
SchI	GAGTC	3 cut(s)	128, 167, 203
ScrFI	CCNGG	3 cut(s)	101, 434, 944
SduI	GDGCHC	1 cut(s)	39
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	88, 648
SmlI	CTYRAG	2 cut(s)	23, 245
SmoI	CTYRAG	2 cut(s)	23, 245
Sse9I	AATT	5 cut(s)	373, 380, 402, 652, 918
SsiI	CCGC	6 cut(s)	109, 111, 260, 357, 362, 581
SspMI	CTAG	2 cut(s)	65, 938
StyD4I	CCNGG	3 cut(s)	99, 432, 942
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	226, 683, 983
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	4 cut(s)	30, 207, 308, 324
TasI	AATT	5 cut(s)	373, 380, 402, 652, 918
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	5 cut(s)	114, 262, 360, 365, 583
TfiI	GAWTC	4 cut(s)	93, 179, 346, 497
Tru1I	TTAA	4 cut(s)	786, 888, 900, 985
Tru9I	TTAA	4 cut(s)	786, 888, 900, 985
TscAI	CASTG	2 cut(s)	517, 682
TseFI	GTSAC	1 cut(s)	977
TseI	GCWGC	2 cut(s)	17, 671
Tsp45I	GTSAC	1 cut(s)	977
TspDTI	ATGAA	1 cut(s)	678
TspGWI	ACGGA	2 cut(s)	234, 304
TspRI	CASTG	2 cut(s)	517, 682
VpaK11BI	GGWCC	2 cut(s)	88, 648
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	2 cut(s)	65, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.