Rmu_co8378449.1_g000001

FHA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8378449.1
OG0002999
Physical Location & Seq
Forward (+)
89 .. 1156
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8378449.1_g000001.1.cds

Sequence Viewer

Length: 1068 bp
atggagcctctagctctcaagctcgagatgctcaaaggcccccgtgagggagagaccctagagtacctacccggatccaaggtccgaatcggccgggtcgtccgcggcaacaacctccccatcaaagactccggcatttccaccaaccacctcatcatcgactcctccgaatcgggtcaatggatgatccgagacctcgactcctccaacggaaccatcgtaaacggcaccaagctcaagccggacacgccgttggagctgagcgacggcgacgagataaagatcggggagtacacgtcgatctccgtcaagatcgacggccacgaagggagcaggttgagaaggaatccgaggcgcggcgcggcggggaacgtggggacggttgcggagagtcggggccggagagggagggttaaggagagtgaggtcgaagtgaaattggaggtggagattgagaatgatgaggaaattagtgtagcagcaccggtcgctgagaatcggggccggagaggtaggcttgcgaagaagaaggaagagaattctgaattggagaaagagggagaggaagttgaggtggtggagaagccgaagaggggccgggggcggccgaggaaagctagggttttgaagagtgaggatttggtggaggaggttgctgtgccggaagtgagttcgagagcaactcaaaggtgtaaggatgtggaagctgtggttccggattcggagaattgcagtgtagagtgtgaacaagtgaagattgaacctaagaggcgtggtgggggtaggaagaggaagaatgtgcaagaagtgccgcgggtgtgtgaagaaggtaatgttgcggcggagaaagatttgggagaaattggtccagttggtgttaatggcgataatgatgataaaggggatgttccggagaagaaggattcgggaggaattggtcctgttgatatcaaggagaatggcgtgtatgatgatgatgctaaagggttgaatttgggagatgaagaggcagcagtcggttttgatgtgggagagagtggcaatgataatgagaaggcaaaagggtcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FHA

Protein Analysis

356

Amino Acids

38.66

Weight (kDa)

5.09

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 4 cut(s) 105, 357, 362, 814
AccIII TCCGGA 2 cut(s) 715, 910
AclWI GGATC 3 cut(s) 69, 82, 181
AcoI YGGCCR 3 cut(s) 91, 319, 605
AcsI RAATTY 2 cut(s) 538, 991
AfaI GTAC 2 cut(s) 65, 293
AfiI CCNNNNNNNGG 4 cut(s) 46, 47, 356, 593
AflIII ACRYGT 1 cut(s) 294
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 3 cut(s) 628, 761, 991
AjiI CACGTC 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 6 cut(s) 14, 22, 235, 259, 617, 707
AluI AGCT 6 cut(s) 14, 22, 235, 259, 617, 707
Alw26I GTCTC 2 cut(s) 47, 186
AlwI GGATC 3 cut(s) 69, 82, 181
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 2 cut(s) 715, 910
AoxI GGCC 7 cut(s) 37, 91, 319, 397, 502, 595, 605
ApeKI GCWGC 2 cut(s) 479, 1010
ApoI RAATTY 2 cut(s) 538, 991
AsiGI ACCGGT 1 cut(s) 484
AspLEI GCGC 2 cut(s) 357, 362
AspS9I GGNCC 8 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065
AsuC2I CCSGG 3 cut(s) 72, 95, 599
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 4 cut(s) 82, 866, 938, 1065
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 491, 1022
BccI CCATC 2 cut(s) 128, 224
BceAI ACGGC 4 cut(s) 235, 241, 283, 334
BcnI CCSGG 3 cut(s) 72, 95, 599
BcoDI GTCTC 2 cut(s) 47, 186
BfaI CTAG 3 cut(s) 11, 59, 618
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 8 cut(s) 106, 358, 363, 480, 605, 812, 840, 1011
BlpI GCTNAGC 1 cut(s) 260
BlsI GCNGC 8 cut(s) 107, 359, 364, 481, 606, 813, 841, 1012
Bme1390I CCNGG 3 cut(s) 72, 95, 599
Bme18I GGWCC 4 cut(s) 82, 866, 938, 1065
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 8 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065
BmrFI CCNGG 3 cut(s) 72, 95, 599
BmsI GCATC 2 cut(s) 18, 967
BplI GAGNNNNNCTC 2 cut(s) 667, 699
Bpu1102I GCTNAGC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 3 cut(s) 72, 95, 599
BsaBI GATNNNNATC 1 cut(s) 281
BsaI GGTCTC 2 cut(s) 47, 186
BsaJI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BsaWI WCCGGW 3 cut(s) 484, 715, 910
BsaXI ACNNNNNCTCC 6 cut(s) 185, 215, 281, 311, 552, 582
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 47, 356, 593
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 869
Bse3DI GCAATG 1 cut(s) 1048
Bse8I GATNNNNATC 1 cut(s) 281
BseAI TCCGGA 2 cut(s) 715, 910
BseDI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BseGI GGATG 3 cut(s) 189, 703, 910
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 4 cut(s) 46, 47, 356, 593
BseMI GCAATG 1 cut(s) 1048
BseMII CTCAG 2 cut(s) 251, 483
BseNI ACTGG 1 cut(s) 869
BseRI GAGGAG 3 cut(s) 154, 193, 662
BseX3I CGGCCG 2 cut(s) 91, 605
BseXI GCAGC 2 cut(s) 491, 1022
Bsh1236I CGCG 4 cut(s) 105, 357, 362, 814
Bsh1285I CGRYCG 3 cut(s) 94, 489, 608
BshFI GGCC 7 cut(s) 39, 93, 321, 399, 504, 597, 607
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 484
BsiEI CGRYCG 3 cut(s) 94, 489, 608
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 4 cut(s) 46, 47, 356, 593
BsmAI GTCTC 2 cut(s) 47, 186
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 7 cut(s) 39, 93, 321, 399, 504, 597, 607
Bso31I GGTCTC 2 cut(s) 47, 186
BsoBI CYCGRG 1 cut(s) 23
Bsp13I TCCGGA 2 cut(s) 715, 910
Bsp143I GATC 5 cut(s) 74, 186, 282, 300, 312
Bsp1720I GCTNAGC 1 cut(s) 260
BspANI GGCC 7 cut(s) 39, 93, 321, 399, 504, 597, 607
BspCNI CTCAG 2 cut(s) 252, 484
BspEI TCCGGA 2 cut(s) 715, 910
BspFNI CGCG 4 cut(s) 105, 357, 362, 814
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 3 cut(s) 69, 82, 181
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 47, 186
BsrDI GCAATG 1 cut(s) 1048
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 1 cut(s) 869
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BssMI GATC 5 cut(s) 74, 186, 282, 300, 312
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 5 cut(s) 528, 584, 623, 782, 999
BstAPI GCANNNNNTGC 1 cut(s) 808
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 3 cut(s) 260, 492, 765
BstDSI CCRYGG 2 cut(s) 103, 812
BstF5I GGATG 3 cut(s) 189, 703, 910
BstFNI CGCG 4 cut(s) 105, 357, 362, 814
BstHHI GCGC 2 cut(s) 357, 362
BstKTI GATC 5 cut(s) 77, 189, 285, 303, 315
BstMAI GTCTC 2 cut(s) 47, 186
BstMBI GATC 5 cut(s) 74, 186, 282, 300, 312
BstMCI CGRYCG 3 cut(s) 94, 489, 608
BstMWI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 488, 808
BstSCI CCNGG 3 cut(s) 70, 93, 597
BstUI CGCG 4 cut(s) 105, 357, 362, 814
BstV1I GCAGC 2 cut(s) 491, 1022
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BstZI CGGCCG 2 cut(s) 91, 605
BsuRI GGCC 7 cut(s) 39, 93, 321, 399, 504, 597, 607
BtgI CCRYGG 2 cut(s) 103, 812
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 3 cut(s) 189, 703, 910
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 1 cut(s) 739
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 2 cut(s) 357, 362
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 8 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065
Cfr42I CCGCGG 2 cut(s) 106, 815
Csp6I GTAC 2 cut(s) 64, 292
CspAI ACCGGT 1 cut(s) 484
CviQI GTAC 2 cut(s) 64, 292
DdeI CTNAG 3 cut(s) 260, 492, 765
DpnI GATC 5 cut(s) 76, 188, 284, 302, 314
DpnII GATC 5 cut(s) 74, 186, 282, 300, 312
EaeI YGGCCR 3 cut(s) 91, 319, 605
EagI CGGCCG 2 cut(s) 91, 605
Eam1104I CTCTTC 5 cut(s) 528, 584, 623, 782, 999
EarI CTCTTC 5 cut(s) 528, 584, 623, 782, 999
EciI GGCGGA 1 cut(s) 857
EclXI CGGCCG 2 cut(s) 91, 605
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 2 cut(s) 47, 186
Eco32I GATATC 1 cut(s) 949
Eco47I GGWCC 4 cut(s) 82, 866, 938, 1065
Eco52I CGGCCG 2 cut(s) 91, 605
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 538
EcoRV GATATC 1 cut(s) 949
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 1 cut(s) 969
FaqI GGGAC 1 cut(s) 391
FauI CCCGC 2 cut(s) 358, 807
Fnu4HI GCNGC 8 cut(s) 106, 358, 363, 480, 605, 812, 840, 1011
FokI GGATG 3 cut(s) 196, 710, 917
Fsp4HI GCNGC 8 cut(s) 106, 358, 363, 480, 605, 812, 840, 1011
FspBI CTAG 3 cut(s) 11, 59, 618
GlaI GCGC 2 cut(s) 356, 361
GluI GCNGC 8 cut(s) 106, 358, 363, 480, 605, 812, 840, 1011
HaeIII GGCC 7 cut(s) 39, 93, 321, 399, 504, 597, 607
HhaI GCGC 2 cut(s) 357, 362
Hin6I GCGC 2 cut(s) 355, 360
HinP1I GCGC 2 cut(s) 355, 360
Hpy166II GTNNAC 3 cut(s) 223, 294, 746
Hpy188I TCNGA 6 cut(s) 86, 169, 191, 351, 544, 724
Hpy188III TCNNGA 6 cut(s) 25, 310, 675, 716, 911, 927
Hpy8I GTNNAC 3 cut(s) 223, 294, 746
Hpy99I CGWCG 4 cut(s) 269, 275, 301, 320
HpyAV CCTTC 6 cut(s) 320, 336, 523, 821, 913, 1048
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 2 cut(s) 296, 372
HpyCH4V TGCA 2 cut(s) 732, 802
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 488, 808
HpyF3I CTNAG 3 cut(s) 260, 492, 765
HpySE526I ACGT 2 cut(s) 296, 372
HspAI GCGC 2 cut(s) 355, 360
Kpn2I TCCGGA 2 cut(s) 715, 910
KspI CCGCGG 2 cut(s) 106, 815
Kzo9I GATC 5 cut(s) 74, 186, 282, 300, 312
LmnI GCTCC 3 cut(s) 4, 256, 330
Lsp1109I GCAGC 2 cut(s) 491, 1022
LweI GCATC 2 cut(s) 18, 967
MaeI CTAG 3 cut(s) 11, 59, 618
MaeII ACGT 2 cut(s) 296, 372
MalI GATC 5 cut(s) 76, 188, 284, 302, 314
MboI GATC 5 cut(s) 74, 186, 282, 300, 312
MflI RGATCY 1 cut(s) 74
MluCI AATT 8 cut(s) 437, 468, 538, 545, 727, 861, 933, 991
MlyI GAGTC 4 cut(s) 122, 155, 194, 400
MmeI TCCRAC 2 cut(s) 231, 234
MroI TCCGGA 2 cut(s) 715, 910
MseI TTAA 2 cut(s) 414, 879
MspA1I CMGCKG 2 cut(s) 105, 814
MspR9I CCNGG 3 cut(s) 72, 95, 599
MteI GCGCNGCGC 1 cut(s) 358
MvnI CGCG 4 cut(s) 105, 357, 362, 814
MwoI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 488, 808
NciI CCSGG 3 cut(s) 72, 95, 599
NdeII GATC 5 cut(s) 74, 186, 282, 300, 312
NmeAIII GCCGAG 1 cut(s) 633
PaeR7I CTCGAG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 165, 216, 321
PfeI GAWTC 6 cut(s) 87, 170, 346, 496, 719, 923
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 8 cut(s) 107, 359, 364, 481, 606, 813, 841, 1012
PleI GAGTC 4 cut(s) 122, 155, 194, 399
PpsI GAGTC 4 cut(s) 122, 155, 194, 399
PspPI GGNCC 8 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 2 cut(s) 65, 293
RsaNI GTAC 2 cut(s) 64, 292
SacII CCGCGG 2 cut(s) 106, 815
SaqAI TTAA 2 cut(s) 414, 879
SatI GCNGC 8 cut(s) 106, 358, 363, 480, 605, 812, 840, 1011
Sau3AI GATC 5 cut(s) 74, 186, 282, 300, 312
Sau96I GGNCC 8 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065
SchI GAGTC 4 cut(s) 122, 155, 194, 400
ScrFI CCNGG 3 cut(s) 72, 95, 599
SfaNI GCATC 2 cut(s) 18, 967
Sfr274I CTCGAG 1 cut(s) 23
Sfr303I CCGCGG 2 cut(s) 106, 815
SgrBI CCGCGG 2 cut(s) 106, 815
SinI GGWCC 4 cut(s) 82, 866, 938, 1065
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 3 cut(s) 17, 23, 236
SmoI CTYRAG 3 cut(s) 17, 23, 236
Sse9I AATT 8 cut(s) 437, 468, 538, 545, 727, 861, 933, 991
SspMI CTAG 3 cut(s) 11, 59, 618
StyD4I CCNGG 3 cut(s) 70, 93, 597
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 2 cut(s) 299, 375
TaqI TCGA 7 cut(s) 24, 159, 198, 299, 315, 429, 674
TasI AATT 8 cut(s) 437, 468, 538, 545, 727, 861, 933, 991
TatI WGTACW 1 cut(s) 291
TauI GCSGC 6 cut(s) 108, 360, 365, 607, 814, 842
TfiI GAWTC 6 cut(s) 87, 170, 346, 496, 719, 923
Tru1I TTAA 2 cut(s) 414, 879
Tru9I TTAA 2 cut(s) 414, 879
TscAI CASTG 1 cut(s) 739
TseI GCWGC 2 cut(s) 479, 1010
TspDTI ATGAA 1 cut(s) 1017
TspGWI ACGGA 2 cut(s) 225, 295
TspRI CASTG 1 cut(s) 739
VpaK11BI GGWCC 4 cut(s) 82, 866, 938, 1065
XapI RAATTY 2 cut(s) 538, 991
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 3 cut(s) 11, 59, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.