Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Reverse (-)

18630056 .. 18632454

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1205500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAGCCCTTAGCTCTCAACCTGAAAATGCTCCGAGGCCCGGGGTTTCATAATTGGAACGGCGACACCCGGCACTTCCGACCCGGATCCAAGGTCCGAATTGGCCGCGACGGCCGCTGCAACAACATCCCGATCAAAGACTCCGGCATTTCTTCCAAGCACCTCTCCATCGAGTCCGAATCGGGCAAATGGGTGCTCCGAGACCTTGACTCCTCAAACGGAACCCTTTTGAATGGCACCAATGTCCCCCCAAACACGCCGCTGGATCTCAGCCACGGCGACGAAATCAAAATCGGCGAGTGCACTTCCATTGAGGTTAAGATCGATGGCTACGAAGAGAGCCGGCTGAGACGGAACCCGAGGCGTGTCGAGGAAATTGAGGTCAAGGGGAATCAGAGGAGGGGTCGACCGCCCAAAGCTAGGGTTTTGAAGAGTGAGGTTGCGGAGGAGAAGCCTGTGGAGGAAAAATTGACACGGCAAGTGAGTGTGAGGCAAACTCGGATCACGAAGAATGAGGAATTGGGGAAGATTGCAGAGAGCTGTTGTGTAGACGCTGAAGGATTGCCGAAAAGGACACGTGGTGGTGCAAGGAGGGGGAAGAATGTACCAAAAGAGCAACCGGTGTGCTATAAACTTGACAATGAAGCTTCAAAAGCGGTGAAATTGGAGGAAGAGAGACATGAGGAGGCGGATAGAGAGTTCAGCGTTGGAGAAGAGAGTGGTGGAAAAGGTGAAAGTGGAAGTGGGAATGGCGAAAAGGTTGAAAATGGAAGCGGGAATCGCATTAAGGGCGACAATGGAAGTGGGAGTGGTTCGGGTGTTAATGTGAGCTGTGACTTGGAGAAGATGACGCTCGGGGAGTGGTTTGGGTTTTTGGAGAGGCATTTGCCAAAACAGATCATTGGTGAGACGGAGGAGGCACTTGCGGAAATGACAGAGAAAGCAAAGAGAATTCGGGAGTACATTGCGCAGGAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

328

Amino Acids

36.29

Weight (kDa)

8.12

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	29 - 101	3.7e-11	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	32 - 99	9.3e-19	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	969
AccB1I	GGYRCC	1 cut(s)	236
AccI	GTMKAC	2 cut(s)	406, 549
AccII	CGCG	1 cut(s)	108
AciI	CCGC	9 cut(s)	106, 115, 260, 410, 443, 656, 689, 774, 926
AclWI	GGATC	4 cut(s)	81, 94, 273, 509
AcoI	YGGCCR	2 cut(s)	103, 112
AcsI	RAATTY	1 cut(s)	951
AcuI	CTGAAG	1 cut(s)	576
AcvI	CACGTG	1 cut(s)	578
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	2 cut(s)	606, 962
AfiI	CCNNNNNNNGG	2 cut(s)	40, 420
AflIII	ACRYGT	1 cut(s)	575
AgeI	ACCGGT	1 cut(s)	619
AgsI	TTSAA	4 cut(s)	232, 430, 651, 764
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	5 cut(s)	14, 419, 540, 647, 831
AluI	AGCT	5 cut(s)	14, 419, 540, 647, 831
Alw21I	GWGCWC	2 cut(s)	198, 305
Alw26I	GTCTC	4 cut(s)	195, 343, 670, 902
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	4 cut(s)	81, 94, 273, 509
Ama87I	CYCGRG	3 cut(s)	40, 358, 854
AoxI	GGCC	3 cut(s)	37, 103, 112
ApaLI	GTGCAC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	951
AsiGI	ACCGGT	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	970
AspS9I	GGNCC	2 cut(s)	38, 94
AsuC2I	CCSGG	4 cut(s)	41, 42, 70, 84
AsuHPI	GGTGA	3 cut(s)	670, 743, 917
AvaI	CYCGRG	3 cut(s)	40, 358, 854
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	9
BbrPI	CACGTG	1 cut(s)	578
Bbv12I	GWGCWC	2 cut(s)	198, 305
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	176, 320
BceAI	ACGGC	4 cut(s)	76, 127, 292, 491
BcnI	CCSGG	4 cut(s)	41, 42, 70, 84
BcoDI	GTCTC	4 cut(s)	195, 343, 670, 902
BfaI	CTAG	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	4 cut(s)	106, 115, 118, 260
BlsI	GCNGC	4 cut(s)	107, 116, 119, 261
Bme1390I	CCNGG	4 cut(s)	41, 42, 70, 84
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	3 cut(s)	40, 358, 854
BmgT120I	GGNCC	2 cut(s)	38, 94
BmiI	GGNNCC	5 cut(s)	6, 88, 223, 238, 356
BmrFI	CCNGG	4 cut(s)	41, 42, 70, 84
BplI	GAGNNNNNCTC	2 cut(s)	481, 513
Bpu10I	CCTNAGC	1 cut(s)	10
BpuMI	CCSGG	4 cut(s)	41, 42, 70, 84
Bsa29I	ATCGAT	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	6 cut(s)	34, 40, 41, 90, 274, 359
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	3 cut(s)	194, 224, 965
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 420
Bse118I	RCCGGY	2 cut(s)	342, 619
Bse3DI	GCAATG	1 cut(s)	963
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	6 cut(s)	34, 40, 41, 90, 274, 359
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	40, 420
BseMI	GCAATG	1 cut(s)	963
BseMII	CTCAG	2 cut(s)	283, 338
BseRI	GAGGAG	5 cut(s)	202, 412, 461, 698, 929
BseSI	GKGCMC	1 cut(s)	305
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	2 cut(s)	115, 410
BshFI	GGCC	3 cut(s)	39, 105, 114
BshNI	GGYRCC	1 cut(s)	236
BshTI	ACCGGT	1 cut(s)	619
BshVI	ATCGAT	1 cut(s)	324
BsiEI	CGRYCG	2 cut(s)	115, 410
BsiHKAI	GWGCWC	2 cut(s)	198, 305
BsiHKCI	CYCGRG	3 cut(s)	40, 358, 854
BsiSI	CCGG	6 cut(s)	41, 70, 84, 144, 343, 620
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	40, 420
BsmAI	GTCTC	4 cut(s)	195, 343, 670, 902
BsmBI	CGTCTC	2 cut(s)	343, 902
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	39, 105, 114
Bso31I	GGTCTC	1 cut(s)	195
BsoBI	CYCGRG	3 cut(s)	40, 358, 854
Bsp1286I	GDGCHC	3 cut(s)	9, 198, 305
Bsp143I	GATC	6 cut(s)	86, 132, 265, 321, 501, 897
BspACI	CCGC	9 cut(s)	106, 115, 260, 410, 443, 656, 689, 774, 926
BspANI	GGCC	3 cut(s)	39, 105, 114
BspCNI	CTCAG	2 cut(s)	282, 339
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	5 cut(s)	6, 88, 223, 238, 356
BspPI	GGATC	4 cut(s)	81, 94, 273, 509
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	963
BsrFI	RCCGGY	2 cut(s)	342, 619
BssAI	RCCGGY	2 cut(s)	342, 619
BssECI	CCNNGG	6 cut(s)	34, 40, 41, 90, 274, 359
BssMI	GATC	6 cut(s)	86, 132, 265, 321, 501, 897
BssT1I	CCWWGG	1 cut(s)	90
Bst6I	CTCTTC	4 cut(s)	330, 425, 666, 708
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	3 cut(s)	10, 269, 347
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	970
BstKTI	GATC	6 cut(s)	89, 135, 268, 324, 504, 900
BstMAI	GTCTC	4 cut(s)	195, 343, 670, 902
BstMBI	GATC	6 cut(s)	86, 132, 265, 321, 501, 897
BstMCI	CGRYCG	2 cut(s)	115, 410
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 114, 653, 780, 789
BstSCI	CCNGG	4 cut(s)	39, 40, 68, 82
BstSLI	GKGCMC	1 cut(s)	305
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	86, 265
BstYI	RGATCY	2 cut(s)	86, 265
BstZI	CGGCCG	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	39, 105, 114
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	1 cut(s)	970
Cfr10I	RCCGGY	2 cut(s)	342, 619
Cfr13I	GGNCC	2 cut(s)	38, 94
Cfr9I	CCCGGG	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	2 cut(s)	560, 859
Csp6I	GTAC	2 cut(s)	605, 961
CspAI	ACCGGT	1 cut(s)	619
CspCI	CAANNNNNGTGG	2 cut(s)	784, 819
CviAII	CATG	1 cut(s)	680
CviQI	GTAC	2 cut(s)	605, 961
DdeI	CTNAG	3 cut(s)	10, 269, 347
DpnI	GATC	6 cut(s)	88, 134, 267, 323, 503, 899
DpnII	GATC	6 cut(s)	86, 132, 265, 321, 501, 897
DraIII	CACNNNGTG	1 cut(s)	581
EaeI	YGGCCR	2 cut(s)	103, 112
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	4 cut(s)	330, 425, 666, 708
EarI	CTCTTC	4 cut(s)	330, 425, 666, 708
EciI	GGCGGA	1 cut(s)	704
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	578
Eco88I	CYCGRG	3 cut(s)	40, 358, 854
EcoRI	GAATTC	1 cut(s)	951
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	90
Esp3I	CGTCTC	2 cut(s)	343, 902
FaeI	CATG	1 cut(s)	683
FaiI	YATR	3 cut(s)	51, 630, 681
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	679
FauI	CCCGC	1 cut(s)	767
FblI	GTMKAC	2 cut(s)	406, 549
Fnu4HI	GCNGC	4 cut(s)	106, 115, 118, 260
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	106, 115, 118, 260
FspBI	CTAG	1 cut(s)	420
FspI	TGCGCA	1 cut(s)	969
GlaI	GCGC	1 cut(s)	969
GluI	GCNGC	4 cut(s)	106, 115, 118, 260
HaeIII	GGCC	3 cut(s)	39, 105, 114
HapII	CCGG	6 cut(s)	41, 70, 84, 144, 343, 620
HgaI	GACGC	2 cut(s)	560, 859
HhaI	GCGC	1 cut(s)	970
Hin1II	CATG	1 cut(s)	683
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HincII	GTYRAC	1 cut(s)	407
HindII	GTYRAC	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	6 cut(s)	140, 173, 179, 209, 391, 778
HpaII	CCGG	6 cut(s)	41, 70, 84, 144, 343, 620
HphI	GGTGA	3 cut(s)	670, 743, 917
Hpy166II	GTNNAC	3 cut(s)	303, 407, 550
Hpy188I	TCNGA	7 cut(s)	35, 80, 98, 178, 200, 396, 501
Hpy188III	TCNNGA	3 cut(s)	130, 505, 956
Hpy8I	GTNNAC	3 cut(s)	303, 407, 550
Hpy99I	CGWCG	2 cut(s)	113, 284
HpyAV	CCTTC	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	4 cut(s)	120, 303, 533, 587
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 114, 653, 780, 789
HpyF3I	CTNAG	3 cut(s)	10, 269, 347
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	1 cut(s)	683
HspAI	GCGC	1 cut(s)	968
KroI	GCCGGC	1 cut(s)	342
KroNI	GCCGGC	1 cut(s)	344
Kzo9I	GATC	6 cut(s)	86, 132, 265, 321, 501, 897
LmnI	GCTCC	3 cut(s)	4, 36, 201
Lsp1109I	GCAGC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	6 cut(s)	88, 134, 267, 323, 503, 899
MboI	GATC	6 cut(s)	86, 132, 265, 321, 501, 897
MboII	GAAGA	9 cut(s)	144, 347, 442, 520, 538, 610, 683, 725, 856
MflI	RGATCY	2 cut(s)	86, 265
MhlI	GDGCHC	3 cut(s)	9, 198, 305
MluCI	AATT	7 cut(s)	52, 99, 375, 467, 518, 662, 951
MlyI	GAGTC	3 cut(s)	134, 182, 203
MmeI	TCCRAC	2 cut(s)	103, 688
MroNI	GCCGGC	1 cut(s)	342
MseI	TTAA	3 cut(s)	318, 786, 822
MspA1I	CMGCKG	2 cut(s)	117, 262
MspI	CCGG	6 cut(s)	41, 70, 84, 144, 343, 620
MspR9I	CCNGG	4 cut(s)	41, 42, 70, 84
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	111, 114, 653, 780, 789
NaeI	GCCGGC	1 cut(s)	344
NciI	CCSGG	4 cut(s)	41, 42, 70, 84
NdeII	GATC	6 cut(s)	86, 132, 265, 321, 501, 897
NgoMIV	GCCGGC	1 cut(s)	342
NlaIII	CATG	1 cut(s)	683
NlaIV	GGNNCC	5 cut(s)	6, 88, 223, 238, 356
NmuCI	GTSAC	1 cut(s)	833
NsbI	TGCGCA	1 cut(s)	969
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	179, 391, 778
PinAI	ACCGGT	1 cut(s)	619
PkrI	GCNGC	4 cut(s)	107, 116, 119, 261
PleI	GAGTC	3 cut(s)	134, 181, 203
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
PpsI	GAGTC	3 cut(s)	134, 181, 203
Ppu21I	YACGTR	1 cut(s)	578
PspCI	CACGTG	1 cut(s)	578
PspN4I	GGNNCC	5 cut(s)	6, 88, 223, 238, 356
PspPI	GGNCC	2 cut(s)	38, 94
PsuI	RGATCY	2 cut(s)	86, 265
RsaI	GTAC	2 cut(s)	606, 962
RsaNI	GTAC	2 cut(s)	605, 961
SalI	GTCGAC	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	318, 786, 822
SatI	GCNGC	4 cut(s)	106, 115, 118, 260
Sau3AI	GATC	6 cut(s)	86, 132, 265, 321, 501, 897
Sau96I	GGNCC	2 cut(s)	38, 94
SchI	GAGTC	3 cut(s)	134, 182, 203
ScrFI	CCNGG	4 cut(s)	41, 42, 70, 84
SduI	GDGCHC	3 cut(s)	9, 198, 305
SfiI	GGCCNNNNNGGCC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	94
SmaI	CCCGGG	1 cut(s)	42
Sse9I	AATT	7 cut(s)	52, 99, 375, 467, 518, 662, 951
SsiI	CCGC	9 cut(s)	106, 115, 260, 410, 443, 656, 689, 774, 926
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	39, 40, 68, 82
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	171, 324, 369, 406
TasI	AATT	7 cut(s)	52, 99, 375, 467, 518, 662, 951
TatI	WGTACW	1 cut(s)	960
TauI	GCSGC	3 cut(s)	108, 117, 262
TfiI	GAWTC	3 cut(s)	179, 391, 778
Tru1I	TTAA	3 cut(s)	318, 786, 822
Tru9I	TTAA	3 cut(s)	318, 786, 822
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	2 cut(s)	38, 657
TspGWI	ACGGA	3 cut(s)	234, 367, 926
TspMI	CCCGGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	1 cut(s)	951
XmaI	CCCGGG	1 cut(s)	40
XmiI	GTMKAC	2 cut(s)	406, 549
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.