Rh4CG038600

FHA domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
7752512 .. 7757124
4613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG038600.1

Sequence Viewer

Length: 1401 bp
ATGGAGCCTTTAGCTCTCAAGCTCGAGATGCTCAAAGGCCCCCGTGAGGGAGAGACCCTAGAGTACCGACCCGGATCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCCCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCGACTCCTCCGAATCGGGTCAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCATCGTAAACGGCACCAAGCTCAAGCCGGACACGCCGTTGGAGCTGAGAGACGGCGACGAGATAAAGATCGGGGAGTACACGTCGATCTCGGTCAAGATCGACGGCCACGAAGGGAGCAGGTTGAGAAGGAATCCGAGGCGCGGCGCGGCGGGGAACGTGGGGACGGTTGCGGAGAGTCGGGGCCGGAGAGGGAGGGTTAAGGAGAGTGAGGTCGAAGTGAAATTGGAGGTGGAGATTGAGAATGATGAGGAAATTGGTGTAGCAGCACCGGTTGCTGAGAATCGGGGCCGGAGAGGTAGGCCTGCGAAGAAGAAGGAAGAGAATTCTGAATTGGAGAAAGAGGGAGAGGAAGTTGAGGTGGTGGAGAAGCCGAAGAGGGGCCGGGGGCGGCCGAGGAAAGCTAGGGTTTTGAAGAGTGAGGATTTGGTGGAGGAGGTTGCTGTGCCGGAAGTGAGTTCGAGAGCAACTCAAAGGTGTAAGGATGTGGAAGCTGTGGTTCCGGATTCGGAGAATTGCAGTGTAGAGTGTGAACAAGTGAAGATTGAACCTAAGAGGCGTGGTGGGGGTAGGAAGAGGAAGAATGTGCAAGAAGTTCCGCGGGTGTGTGAGGAAGGTGATGTTGCGGCGGAGAATGATTTGGGAGAAATTCGTCCAATTGGTGTTAATGGCGATAATGATGATAAAGGGGATGTTCCGGAGCAGAAGGATTCGGGAGGAATTGGTCCAGTCGATCTCAAGGAGAATGGCGTGGATGATGATGCTGCTAAAGGGTTGAATTTGGGGGATGAAGAGGCAGCAGCCGATTATGATGTGGGAGAGAGTGGCAATGATAATGAGAAGGCAAAAGGGTCCAATTTGGGCCATGAAGAGGCAGCCACTGACTGTAATGTTGGAGAGAGTGGCAATAAGGTTGAAAGTGGTAGTAGAAGCTGTTTCGGTGTTAGTGGTACTAAGGATGTGGATAAAAAGGGGACTGGTTCTGGTGTTAAAGAAGGTTTGGGAAAGGTTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGACGATTGGTTTGATTATGTGGAAGTTTCTTTGCCAAAAGCGGTTAATGATGAGATTGACAAGATTTGTTCCGGAATGAGAGAGAAGGCTAAGCTAGTCCAGGAATATATAGCACAACACAAGAAGGAGAAGTGTCAAAGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

50.81

Weight (kDa)

5.05

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 9 - 97 1e-08 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 28 - 96 2.4e-18 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 4 cut(s) 105, 357, 362, 814
AccIII TCCGGA 3 cut(s) 715, 910, 1328
AclWI GGATC 3 cut(s) 69, 82, 181
AcoI YGGCCR 3 cut(s) 91, 319, 605
AcsI RAATTY 3 cut(s) 538, 861, 991
AfaI GTAC 3 cut(s) 65, 293, 1165
AfiI CCNNNNNNNGG 5 cut(s) 46, 47, 356, 593, 1084
AflIII ACRYGT 1 cut(s) 294
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 4 cut(s) 628, 761, 991, 1130
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 1356
AjuI GAANNNNNNNTTGG 4 cut(s) 530, 562, 1238, 1270
AluBI AGCT 8 cut(s) 14, 22, 235, 259, 617, 707, 1146, 1351
AluI AGCT 8 cut(s) 14, 22, 235, 259, 617, 707, 1146, 1351
Alw26I GTCTC 3 cut(s) 47, 186, 258
AlwI GGATC 3 cut(s) 69, 82, 181
AlwNI CAGNNNCTG 1 cut(s) 1094
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 3 cut(s) 715, 910, 1328
AoxI GGCC 9 cut(s) 37, 91, 319, 397, 502, 515, 595, 605, 1075
ApeKI GCWGC 5 cut(s) 479, 977, 1010, 1013, 1088
ApoI RAATTY 3 cut(s) 538, 861, 991
ArsI GACNNNNNNTTYG 2 cut(s) 1250, 1282
AsiGI ACCGGT 1 cut(s) 484
AspLEI GCGC 2 cut(s) 357, 362
AspS9I GGNCC 8 cut(s) 38, 82, 397, 502, 595, 938, 1065, 1075
AsuC2I CCSGG 3 cut(s) 72, 95, 599
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 3 cut(s) 82, 938, 1065
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 227
BbvI GCAGC 5 cut(s) 491, 964, 1022, 1025, 1100
BccI CCATC 2 cut(s) 128, 224
BceAI ACGGC 4 cut(s) 235, 241, 283, 334
BciT130I CCWGG 1 cut(s) 1358
BcnI CCSGG 3 cut(s) 72, 95, 599
BcoDI GTCTC 3 cut(s) 47, 186, 258
BfaI CTAG 3 cut(s) 59, 618, 1352
BfuAI ACCTGC 1 cut(s) 324
BlpI GCTNAGC 1 cut(s) 1347
Bme1390I CCNGG 4 cut(s) 72, 95, 599, 1358
Bme18I GGWCC 3 cut(s) 82, 938, 1065
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 8 cut(s) 38, 82, 397, 502, 595, 938, 1065, 1075
BmrFI CCNGG 4 cut(s) 72, 95, 599, 1358
BmsI GCATC 2 cut(s) 18, 964
BplI GAGNNNNNCTC 2 cut(s) 667, 699
Bpu1102I GCTNAGC 1 cut(s) 1347
BpuEI CTTGAG 2 cut(s) 221, 935
BpuMI CCSGG 3 cut(s) 72, 95, 599
BsaBI GATNNNNATC 1 cut(s) 281
BsaI GGTCTC 2 cut(s) 47, 186
BsaJI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BsaWI WCCGGW 4 cut(s) 484, 715, 910, 1328
BsaXI ACNNNNNCTCC 6 cut(s) 185, 215, 281, 311, 552, 582
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 47, 356, 593, 1084
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 941, 1195
Bse3DI GCAATG 1 cut(s) 1048
Bse8I GATNNNNATC 1 cut(s) 281
BseAI TCCGGA 3 cut(s) 715, 910, 1328
BseBI CCWGG 1 cut(s) 1358
BseDI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BseGI GGATG 6 cut(s) 189, 703, 910, 973, 1006, 1177
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 5 cut(s) 46, 47, 356, 593, 1084
BseMI GCAATG 1 cut(s) 1048
BseMII CTCAG 2 cut(s) 251, 483
BseNI ACTGG 2 cut(s) 941, 1195
BseRI GAGGAG 3 cut(s) 154, 193, 662
BseX3I CGGCCG 2 cut(s) 91, 605
BseXI GCAGC 5 cut(s) 491, 964, 1022, 1025, 1100
Bsh1236I CGCG 4 cut(s) 105, 357, 362, 814
Bsh1285I CGRYCG 2 cut(s) 94, 608
BshFI GGCC 9 cut(s) 39, 93, 321, 399, 504, 517, 597, 607, 1077
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 484
BsiEI CGRYCG 2 cut(s) 94, 608
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 391, 1201
BslI CCNNNNNNNGG 5 cut(s) 46, 47, 356, 593, 1084
BsmAI GTCTC 3 cut(s) 47, 186, 258
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 2 cut(s) 391, 1201
BsnI GGCC 9 cut(s) 39, 93, 321, 399, 504, 517, 597, 607, 1077
Bso31I GGTCTC 2 cut(s) 47, 186
BsoBI CYCGRG 1 cut(s) 23
Bsp13I TCCGGA 3 cut(s) 715, 910, 1328
Bsp143I GATC 6 cut(s) 74, 186, 282, 300, 312, 946
Bsp1720I GCTNAGC 1 cut(s) 1347
BspANI GGCC 9 cut(s) 39, 93, 321, 399, 504, 517, 597, 607, 1077
BspCNI CTCAG 2 cut(s) 252, 484
BspEI TCCGGA 3 cut(s) 715, 910, 1328
BspFNI CGCG 4 cut(s) 105, 357, 362, 814
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 3 cut(s) 69, 82, 181
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 47, 186
BsrDI GCAATG 1 cut(s) 1048
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 2 cut(s) 941, 1195
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BssMI GATC 6 cut(s) 74, 186, 282, 300, 312, 946
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 1358
Bst4CI ACNGT 2 cut(s) 382, 1100
Bst6I CTCTTC 6 cut(s) 528, 584, 623, 782, 999, 1077
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 5 cut(s) 260, 492, 765, 1167, 1347
BstDSI CCRYGG 2 cut(s) 103, 812
BstF5I GGATG 6 cut(s) 189, 703, 910, 973, 1006, 1177
BstFNI CGCG 4 cut(s) 105, 357, 362, 814
BstHHI GCGC 2 cut(s) 357, 362
BstKTI GATC 6 cut(s) 77, 189, 285, 303, 315, 949
BstMAI GTCTC 3 cut(s) 47, 186, 258
BstMBI GATC 6 cut(s) 74, 186, 282, 300, 312, 946
BstMCI CGRYCG 2 cut(s) 94, 608
BstMWI GCNNNNNNNGC 4 cut(s) 28, 247, 256, 488
BstNI CCWGG 1 cut(s) 1358
BstSCI CCNGG 4 cut(s) 70, 93, 597, 1356
BstUI CGCG 4 cut(s) 105, 357, 362, 814
BstV1I GCAGC 5 cut(s) 491, 964, 1022, 1025, 1100
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BstZI CGGCCG 2 cut(s) 91, 605
BsuRI GGCC 9 cut(s) 39, 93, 321, 399, 504, 517, 597, 607, 1077
BtgI CCRYGG 2 cut(s) 103, 812
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 6 cut(s) 189, 703, 910, 973, 1006, 1177
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 2 cut(s) 739, 1092
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 519
CaiI CAGNNNCTG 1 cut(s) 1094
CfoI GCGC 2 cut(s) 357, 362
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 8 cut(s) 38, 82, 397, 502, 595, 938, 1065, 1075
Cfr42I CCGCGG 2 cut(s) 106, 815
Csp6I GTAC 3 cut(s) 64, 292, 1164
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 1 cut(s) 1079
CviQI GTAC 3 cut(s) 64, 292, 1164
DdeI CTNAG 5 cut(s) 260, 492, 765, 1167, 1347
DpnI GATC 6 cut(s) 76, 188, 284, 302, 314, 948
DpnII GATC 6 cut(s) 74, 186, 282, 300, 312, 946
EaeI YGGCCR 3 cut(s) 91, 319, 605
EagI CGGCCG 2 cut(s) 91, 605
Eam1104I CTCTTC 6 cut(s) 528, 584, 623, 782, 999, 1077
EarI CTCTTC 6 cut(s) 528, 584, 623, 782, 999, 1077
EciI GGCGGA 1 cut(s) 857
EclXI CGGCCG 2 cut(s) 91, 605
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 517
Eco31I GGTCTC 2 cut(s) 47, 186
Eco47I GGWCC 3 cut(s) 82, 938, 1065
Eco52I CGGCCG 2 cut(s) 91, 605
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 1356
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 1 cut(s) 1082
FaiI YATR 5 cut(s) 1023, 1080, 1275, 1365, 1367
FaqI GGGAC 2 cut(s) 391, 1201
FatI CATG 1 cut(s) 1078
FauI CCCGC 2 cut(s) 358, 807
FokI GGATG 6 cut(s) 196, 710, 917, 980, 1013, 1184
FspBI CTAG 3 cut(s) 59, 618, 1352
GlaI GCGC 2 cut(s) 356, 361
HaeIII GGCC 9 cut(s) 39, 93, 321, 399, 504, 517, 597, 607, 1077
HhaI GCGC 2 cut(s) 357, 362
Hin1II CATG 1 cut(s) 1082
Hin6I GCGC 2 cut(s) 355, 360
HinP1I GCGC 2 cut(s) 355, 360
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 3 cut(s) 223, 294, 746
Hpy188I TCNGA 6 cut(s) 86, 169, 191, 351, 544, 724
Hpy188III TCNNGA 7 cut(s) 25, 310, 675, 716, 911, 927, 1329
Hpy8I GTNNAC 3 cut(s) 223, 294, 746
Hpy99I CGWCG 3 cut(s) 275, 301, 320
HpyAV CCTTC 9 cut(s) 320, 336, 523, 821, 913, 1048, 1202, 1336, 1375
HpyCH4III ACNGT 2 cut(s) 382, 1100
HpyCH4IV ACGT 2 cut(s) 296, 372
HpyCH4V TGCA 2 cut(s) 732, 802
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 247, 256, 488
HpyF3I CTNAG 5 cut(s) 260, 492, 765, 1167, 1347
HpySE526I ACGT 2 cut(s) 296, 372
Hsp92II CATG 1 cut(s) 1082
HspAI GCGC 2 cut(s) 355, 360
Kpn2I TCCGGA 3 cut(s) 715, 910, 1328
KspI CCGCGG 2 cut(s) 106, 815
Kzo9I GATC 6 cut(s) 74, 186, 282, 300, 312, 946
LmnI GCTCC 5 cut(s) 4, 256, 330, 913, 1231
Lsp1109I GCAGC 5 cut(s) 491, 964, 1022, 1025, 1100
LweI GCATC 2 cut(s) 18, 964
MaeI CTAG 3 cut(s) 59, 618, 1352
MaeII ACGT 2 cut(s) 296, 372
MalI GATC 6 cut(s) 76, 188, 284, 302, 314, 948
MboI GATC 6 cut(s) 74, 186, 282, 300, 312, 946
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 1 cut(s) 74
MlyI GAGTC 4 cut(s) 122, 155, 194, 400
MmeI TCCRAC 3 cut(s) 231, 234, 1087
MroI TCCGGA 3 cut(s) 715, 910, 1328
MseI TTAA 5 cut(s) 414, 879, 1203, 1302, 1399
MspA1I CMGCKG 2 cut(s) 105, 814
MspR9I CCNGG 4 cut(s) 72, 95, 599, 1358
MteI GCGCNGCGC 1 cut(s) 358
MunI CAATTG 1 cut(s) 870
MvaI CCWGG 1 cut(s) 1358
MvnI CGCG 4 cut(s) 105, 357, 362, 814
MwoI GCNNNNNNNGC 4 cut(s) 28, 247, 256, 488
NciI CCSGG 3 cut(s) 72, 95, 599
NdeII GATC 6 cut(s) 74, 186, 282, 300, 312, 946
NlaIII CATG 1 cut(s) 1082
NmeAIII GCCGAG 1 cut(s) 633
PaeR7I CTCGAG 1 cut(s) 23
PceI AGGCCT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 165, 216, 321
PfeI GAWTC 6 cut(s) 87, 170, 346, 496, 719, 923
PfoI TCCNGGA 1 cut(s) 1356
PinAI ACCGGT 1 cut(s) 484
PleI GAGTC 4 cut(s) 122, 155, 194, 399
PpsI GAGTC 4 cut(s) 122, 155, 194, 399
Psp6I CCWGG 1 cut(s) 1356
PspGI CCWGG 1 cut(s) 1356
PspPI GGNCC 8 cut(s) 38, 82, 397, 502, 595, 938, 1065, 1075
PstNI CAGNNNCTG 1 cut(s) 1094
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 3 cut(s) 65, 293, 1165
RsaNI GTAC 3 cut(s) 64, 292, 1164
SacII CCGCGG 2 cut(s) 106, 815
SaqAI TTAA 5 cut(s) 414, 879, 1203, 1302, 1399
Sau3AI GATC 6 cut(s) 74, 186, 282, 300, 312, 946
Sau96I GGNCC 8 cut(s) 38, 82, 397, 502, 595, 938, 1065, 1075
SchI GAGTC 4 cut(s) 122, 155, 194, 400
ScrFI CCNGG 4 cut(s) 72, 95, 599, 1358
SfaNI GCATC 2 cut(s) 18, 964
Sfr274I CTCGAG 1 cut(s) 23
Sfr303I CCGCGG 2 cut(s) 106, 815
SgrBI CCGCGG 2 cut(s) 106, 815
SinI GGWCC 3 cut(s) 82, 938, 1065
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 4 cut(s) 17, 23, 236, 950
SmoI CTYRAG 4 cut(s) 17, 23, 236, 950
SseBI AGGCCT 1 cut(s) 517
SspMI CTAG 3 cut(s) 59, 618, 1352
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 4 cut(s) 70, 93, 597, 1356
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 382, 1100
TaiI ACGT 2 cut(s) 299, 375
TaqI TCGA 8 cut(s) 24, 159, 198, 299, 315, 429, 674, 945
TaqII GACCGA 1 cut(s) 295
TatI WGTACW 1 cut(s) 291
TauI GCSGC 5 cut(s) 108, 360, 365, 607, 842
TfiI GAWTC 6 cut(s) 87, 170, 346, 496, 719, 923
Tru1I TTAA 5 cut(s) 414, 879, 1203, 1302, 1399
Tru9I TTAA 5 cut(s) 414, 879, 1203, 1302, 1399
TscAI CASTG 2 cut(s) 739, 1099
TseI GCWGC 5 cut(s) 479, 977, 1010, 1013, 1088
TspDTI ATGAA 2 cut(s) 1017, 1095
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 2 cut(s) 739, 1099
VpaK11BI GGWCC 3 cut(s) 82, 938, 1065
XapI RAATTY 3 cut(s) 538, 861, 991
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 3 cut(s) 59, 618, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.